Chuan Ku

发表

Using single-cell transcriptomics to understand functional states and interactions in microbial eukaryotes

A. Sebé-Pedrós, Chuan Ku, Arnau Sebé-Pedrós, 2019, Philosophical Transactions of the Royal Society B.

A single-cell view on alga-virus interactions reveals sequential transcriptional programs and infection states

A. Tanay, S. Ben-Dor, A. Sebé-Pedrós, 2020, Science Advances.

OP-GBEV140033 500..509

Ling-Ling Chen, Wen-Sui Lo, C. Kuo, 2014 .

Late Mitochondrial Origin Is an Artifact

W. Martin, Giddy Landan, M. Roettger, 2017, Genome biology and evolution.

Rampant nuclear–mitochondrial–plastid phylogenomic discordance in globally distributed calcifying microalgae

Chuan Ku, Tzu-Tong Kao, Tzu-Haw Wang, 2022, The New phytologist.

Daily turnover of active giant virus infection during algal blooms revealed by single-cell transcriptomics

A. Vardi, Flora Vincent, Uri Sheyn, 2022, bioRxiv.

Complete Plastid Genome Sequence of the Basal Asterid Ardisia polysticta Miq. and Comparative Analyses of Asterid Plastid Genomes

C. Kuo, Chuan Ku, Jer‐Ming Hu, 2013, PloS one.

The Complete Plastid Genome Sequence of Madagascar Periwinkle Catharanthus roseus (L.) G. Don: Plastid Genome Evolution, Molecular Marker Identification, and Phylogenetic Implications in Asterids

Ling-Ling Chen, C. Kuo, Wan-Chia Chung, 2013, PloS one.

Plastid origin: who, when and why?

Filipa L. Sousa, W. Martin, M. Roettger, 2014 .

Comparison of Metabolic Capacities and Inference of Gene Content Evolution in Mosquito-Associated Spiroplasma diminutum and S. taiwanense

Ling-Ling Chen, Wen-Sui Lo, C. Kuo, 2013, Genome biology and evolution.

Complete Genomes of Two Dipteran-Associated Spiroplasmas Provided Insights into the Origin, Dynamics, and Impacts of Viral Invasion in Spiroplasma

Ling-Ling Chen, Wen-Sui Lo, C. Kuo, 2013, Genome biology and evolution.

A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70 % rule

W. Martin, Chuan Ku, 2016, BMC Biology.

Unraveling gene content variation across eukaryotic giant viruses based on network analyses and host associations

Chuan Ku, Tsu-Wang Sun, 2021, Virus evolution.

Endosymbiotic origin and differential loss of eukaryotic genes

David Bryant, Chuan Ku, Shijulal Nelson-Sathi, 2015, Nature.

Endosymbiotic gene transfer from prokaryotic pangenomes: Inherited chimerism in eukaryotes

Chuan Ku, Shijulal Nelson-Sathi, Mayo Roettger, 2015, Proceedings of the National Academy of Sciences.

Late mitochondrial origin is pure artefact

W. Martin, Giddy Landan, M. Roettger, 2016, bioRxiv.

Single-cell transcriptomics unveils xylem cell development and evolution

Chia-En Huang, Ying-Hsuan Sun, Chuan Ku, 2021, bioRxiv.

Endosymbiotic theory for organelle origins.

W. Martin, S. Gould, Chuan Ku, 2014, Current opinion in microbiology.

Widespread Distribution and Evolution of Poxviral Entry-Fusion Complex Proteins in Giant Viruses

C-F Kao, Wen Chang, Chuan Ku, 2023, bioRxiv.

Giant Virus-Eukaryote Interactions as Ecological and Evolutionary Driving Forces

Chuan Ku, 2021, mSystems.

Tracking infection dynamics at single-cell level reveals highly resolved expression programs of a large virus infecting algal blooms

A. Tanay, S. Ben-Dor, A. Sebé-Pedrós, 2019, bioRxiv.

Host Range and Coding Potential of Eukaryotic Giant Viruses

Chuan Ku, Tzu-Tong Kao, M. Lai, 2020, Viruses.

Did giant and large dsDNA viruses originate before their eukaryotic hosts?

Chuan Ku, Tsu-Wang Sun, 2020, Proceedings of the National Academy of Sciences.

Molecular Evolution of the Substrate Utilization Strategies and Putative Virulence Factors in Mosquito-Associated Spiroplasma Species

Ling-Ling Chen, Wen-Sui Lo, C. Kuo, 2014, Genome biology and evolution.

Horizontal transfer of potential mobile units in phytoplasmas

Wen-Sui Lo, C. Kuo, Chuan Ku, 2013, Mobile genetic elements.

Bacterial virulence against an oceanic bloom-forming phytoplankter is mediated by algal DMSP

Ron Rotkopf, A. Aharoni, S. Malitsky, 2018, Science Advances.

Phylogenetic and Cophylogenetic Analyses of the Leaf-Nodule Symbiosis in Ardisia Subgenus Crispardisia (Myrsinaceae): Evidence from Nuclear and Chloroplast Markers and Bacterial rrn Operons

Chuan Ku, Jer‐Ming Hu, 2013, International Journal of Plant Sciences.

Complete Genome Sequence of Sulfitobacter sp. Strain D7, a Virulent Bacterium Isolated from an Emiliania huxleyi Algal Bloom in the North Atlantic

M. Maienschein-Cline, A. Vardi, S. Green, 2018, Microbiology Resource Announcements.

Molecular evolution of the actin-like MreB protein gene family in wall-less bacteria.

Wen-Sui Lo, C. Kuo, Chuan Ku, 2014, Biochemical and biophysical research communications.

A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70 % rule

W. Martin, Chuan Ku, 2016, BMC Biology.

Complete Genome Sequence of Phaeobacter sp. Strain G2, Isolated from a Lab Culture of the Calcifying Alga Emiliania huxleyi

Chuan Ku, M. Lai, Tzu-Haw Wang, 2022, Microbiology resource announcements.

Daily turnover of active giant virus infection during algal blooms revealed by single-cell transcriptomics

A. Vardi, Flora Vincent, Uri Sheyn, 2023, Science advances.

A single-cell view on alga-virus interactions reveals sequential transcriptional programs and infection states.

A. Tanay, S. Ben-Dor, A. Vardi, 2020, Science advances.

Cathepsin X is a conserved cell death protein involved in algal response to environmental stress

Robert E. Jinkerson, O. Dym, S. Ben-Dor, 2024, bioRxiv.

Life Cycle and Morphogenetic Differentiation in Heteromorphic Cell Types of a Cosmopolitan Marine Microalga

R. Templin, M. Frada, Chuan Ku, 2024, bioRxiv.