C. Shao

发表

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop.

Haruki Nakamura, Evan Bolton, Zukang Feng, 2016, Structure.

Outlier analyses of the Protein Data Bank archive using a probability-density-ranking approach

S. Burley, Huanwang Yang, C. Shao, 2018, Scientific Data.

Trendspotting in the Protein Data Bank

Chenghua Shao, Shuchismita Dutta, Andreas Prlić, 2013, FEBS letters.

RCSB Protein Data Bank: Enabling biomedical research and drug discovery

Chenghua Shao, Jose M. Duarte, Christine Zardecki, 2019, Protein science : a publication of the Protein Society.

Assessing PDB Macromolecular Crystal Structure Confidence at the Individual Amino Acid Residue Level

S. Burley, C. Shao, Sijian Wang, 2022, bioRxiv.

D3R grand challenge 4: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies

Rommie E. Amaro, M. Gilson, W. P. Walters, 2019, Journal of Computer-Aided Molecular Design.

Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students

Jose M. Duarte, A. Sali, H. Berman, 2022, Biomolecules.

Centromere targeting of Mis18 requires the interaction with DNA and H2A–H2B in fission yeast

J. Zang, Fenfen Dong, Chuanhai Fu, 2020, Cellular and Molecular Life Sciences.

Three-dimensional structure of the inner core of rice dwarf virus

Z. Zhou, G. Lu, C. Shao, 2001, Science in China Series C: Life Sciences.

RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D

Jose M. Duarte, Ben M. Webb, Sai J. Ganesan, 2022, Protein science : a publication of the Protein Society.

Crystallographic Analysis of Calcium-dependent Heparin Binding to Annexin A2*

Chenghua Shao, Robert J Linhardt, Fuming Zhang, 2006, Journal of Biological Chemistry.

RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning

Jose M. Duarte, Rachel Kramer Green, Ben M. Webb, 2022, Nucleic Acids Res..

The RCSB protein data bank: integrative view of protein, gene and 3D structural information

David S. Goodsell, Andreas Prlic, Zukang Feng, 2016, Nucleic Acids Res..

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences

David S. Goodsell, Zukang Feng, John D. Westbrook, 2020, Nucleic Acids Res..

Validation of Structures in the Protein Data Bank

Naohiro Kobayashi, Haruki Nakamura, Zukang Feng, 2017, Structure.

D3R Grand Challenge 2: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies

Shuai Liu, Huanwang Yang, Stephen K. Burley, 2017, Journal of Computer-Aided Molecular Design.

Protein Data Bank: the single global archive for 3D macromolecular structure data

Cole H. Christie, Jose M. Duarte, Rachel Kramer Green, 2018, Nucleic acids research.

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy

David S. Goodsell, Zukang Feng, John D. Westbrook, 2018, Nucleic Acids Res..

Crystal Structure of Lactadherin C2 Domain at 1.7Å Resolution with Mutational and Computational Analyses of Its Membrane-binding Motif*

V. Novakovic, B. Seaton, G. E. Gilbert, 2008, Journal of Biological Chemistry.

Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking

Jeffrey R. Wagner, Christopher Churas, Shuai Liu, 2018, bioRxiv.

Structural insights into the mechanism of Escherichia coli YmdB: A 2'-O-acetyl-ADP-ribose deacetylase.

J. Zang, C. Shao, Chengliang Wang, 2015, Journal of structural biology.

RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D

Jose M. Duarte, Sai J. Ganesan, A. Sali, 2021, Protein science : a publication of the Protein Society.

Crystal Structure of Human SSRP1 Middle Domain Reveals a Role in DNA Binding

Yunyu Shi, Yiwei Liu, M. Teng, 2015, Scientific Reports.

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data

Genji Kurisu, Haruki Nakamura, Zukang Feng, 2018, Database J. Biol. Databases Curation.

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive.

Naohiro Kobayashi, Haruki Nakamura, Zukang Feng, 2017, Structure.

Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Archive.

Huanwang Yang, Chenghua Shao, Christine Zardecki, 2017, Structure.

Small molecule annotation for the Protein Data Bank

Abhik Mukhopadhyay, Ezra Peisach, Chenghua Shao, 2014, Database J. Biol. Databases Curation.

Chemical annotation of small and peptide-like molecules at the Protein Data Bank

Zukang Feng, John D. Westbrook, Helen M. Berman, 2013, Database J. Biol. Databases Curation.

Simplified quality assessment for small-molecule ligands in the Protein Data Bank.

Jose M. Duarte, J. Westbrook, S. Burley, 2022, Structure.

PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology

K. Diederichs, H. Berman, J. Westbrook, 2022, Journal of molecular biology.

The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank

Zukang Feng, John D. Westbrook, Sameer Velankar, 2015, Bioinform..

Modulation of Bacillus thuringiensis Phosphatidylinositol-specific Phospholipase C Activity by Mutations in the Putative Dimerization Interface*

Xin Zhang, A. Redfield, B. Seaton, 2009, The Journal of Biological Chemistry.

Structural basis for the substrate selectivity of PvuRts1I, a 5-hydroxymethylcytosine DNA restriction endonuclease

J. Zang, C. Shao, Chengliang Wang, 2014, Acta crystallographica. Section D, Biological crystallography.

Analysis of impact metrics for the Protein Data Bank

Stephen K. Burley, Chenghua Shao, Monica Sekharan, 2018, Scientific Data.

D3R Grand Challenge 3: blind prediction of protein–ligand poses and affinity rankings

Huanwang Yang, Stephen K. Burley, W. Patrick Walters, 2018, Journal of Computer-Aided Molecular Design.

Dimer Structure of an Interfacially Impaired Phosphatidylinositol-specific Phospholipase C*

B. Seaton, M. Roberts, Hania Wehbi, 2007, Journal of Biological Chemistry.

Modernized Uniform Representation of Carbohydrate Molecules in theProtein Data Bank.

J. Westbrook, S. Burley, S. Velankar, 2021, Glycobiology.

Outlier analyses of the Protein Data Bank archive using a probability-density-ranking approach

S. Burley, Huanwang Yang, C. Shao, 2018, Scientific Data.

Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank

Zukang Feng, Chenghua Shao, Gerard J Kleywegt, 2014, Biopolymers.

Trendspotting in the Protein Data Bank

A. Prlić, H. Berman, P. W. Rose, 2013, FEBS letters.