Rabie Saidi

发表

Prediction of Metabolic Pathways Involvement in Prokaryotic UniProtKB Data by Association Rule Mining

V. Solovyev, M. Martin, R. Hoehndorf, 2015, 1509.07028.

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Jari Björne, Tapio Salakoski, Giorgio Valentini, 2019, Genome Biology.

UniProt: the Universal Protein knowledgebase

Cathy H. Wu, Jerven T. Bolleman, Béatrice A. Cuche, 2004, Nucleic Acids Res..

UniProt: the universal protein knowledgebase

Cathy H. Wu, Christian J. A. Sigrist, Jerven T. Bolleman, 2016, Nucleic Acids Research.

Mining Representative Unsubstituted Graph Patterns Using Prior Similarity Matrix

E. Nguifo, Rabie Saidi, Wajdi Dhifli, 2013, ArXiv.

Effect of Sequence Padding on the Performance of Protein-Based Deep Learning Models

Angela Lopez-del Rio, M. Martin, A. Perera-Lluna, 2020 .

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase

Claire O'Donovan, Elisabeth Coudert, Hongzhan Huang, 2020, Bioinform..

Protein graph repository

Wajdi Dhifli, Rabie Saidi, Rabie Saidi, 2010, EGC.

UniProt: the universal protein knowledgebase in 2021

Peter B. McGarvey, Cathy H. Wu, Alex Bateman, 2020, Nucleic Acids Res..

UniProt: A hub for protein information

María Martín, Peter B. McGarvey, Y Wang, 2015 .

Activities at the Universal Protein Resource (UniProt)

María Martín, Peter B. McGarvey, Y Wang, 2013, Nucleic Acids Res..

CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations

R. Cetin-Atalay, V. Atalay, M. Martin, 2021, Nucleic acids research.

UniProt: the Universal Protein Knowledgebase in 2023

Cathy H. Wu, Jerven T. Bolleman, The UniProt Consortium, 2022, Nucleic acids research.

Feature extraction in protein sequences classification: a new stability measure

Sabeur Aridhi, Engelbert Mephu Nguifo, Mondher Maddouri, 2012, BCB.

Novel metrics for feature extraction stability in protein sequence classication

Rabie Saidi, Aridhi Saber, Maddouri Mondher, 2011 .

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Tapio Salakoski, Feng Zhang, Paolo Fontana, 2019, Genome Biology.

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase

Anne Morgat, Alan Bridge, Damien Lieberherr, 2020, Bioinformatics.

Hierarchical deep learning for predicting GO annotations by integrating protein knowledge

Diego H. Milone, G. Merino, G. Stegmayer, 2022, Bioinform..

Activities at the Universal Protein Resource (UniProt)

Cathy H. Wu, Tony Sawford, Michel Schneider, 2014, Nucleic Acids Research.

Effect of sequence padding on the performance of deep learning models in archaeal protein functional prediction

Alexandre Perera-Lluna, Rabie Saidi, Maria Martin, 2020, Scientific Reports.

Large‐scale automated function prediction of protein sequences and an experimental case study validation on PTEN transcript variants

Rabie Saidi, Tunca Doğan, Tulin Ersahin, 2018, Proteins.

A self-training approach for functional annotation of UniProtKB proteins

M. Martin, F. Smeraldi, Rabie Saidi, 2017 .

Tools and data services registry: a community effort to document bioinformatics resources

Silvio C. E. Tosatto, Anthony Bretaudeau, Burkhard Rost, 2015, Nucleic Acids Res..

Mining Undominated Association Rules Through Interestingness Measures

Engelbert Mephu Nguifo, Sadok Ben Yahia, Rabie Saidi, 2014, Int. J. Artif. Intell. Tools.

Ranking and Selecting Association Rules Based on Dominance Relationship

Engelbert Mephu Nguifo, Sadok Ben Yahia, Rabie Saidi, 2012, 2012 IEEE 24th International Conference on Tools with Artificial Intelligence.

Automatic Generation of Functional Annotation Rules Using Inferred GO-Domain Associations

Seyed Ziaeddin Alborzi, M. Martin, D. Ritchie, 2017, ISMB/ECCB 2017.

Smoothing 3D Protein Structure Motifs Through Graph Mining and Amino Acid Similarities

WAJDI DHIFLI, RABIE SAIDI, ENGELBERT MEPHU NGUIFO, 2014, J. Comput. Biol..

Protein sequences classification by means of feature extraction with substitution matrices

Engelbert Mephu Nguifo, Mondher Maddouri, Rabie Saidi, 2010, BMC Bioinformatics.

UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB

Maria Jesus Martin, Claire O'Donovan, Alex Bateman, 2016, Bioinform..

A novel approach for mining representative spatial motifs of proteins

Wajdi Dhifli, Engelbert Mephu Nguifo, Rabie Saidi, 2012, BCB.

Prediction of Metabolic Pathway Involvement in Prokaryotic UniProtKB Data by Association Rule Mining

Robert Hoehndorf, Rabie Saidi, Imane Boudellioua, 2016, PloS one.

Rule Mining Techniques to Predict Prokaryotic Metabolic Pathways.

Rabie Saidi, Imane Boudellioua, Victor Solovyev, 2017, Methods in molecular biology.

Tools and data services registry: a community effort to document bioinformatics resources

Silvio C. E. Tosatto, Radka Svobodová Vareková, Victor de la Torre, 2015, Nucleic Acids Res..

UniProt: the Universal Protein Knowledgebase in 2023

Cathy H. Wu, Christian J. A. Sigrist, Jerven T. Bolleman, 2022, Nucleic Acids Res..

Efficiently Mining Recurrent Substructures from Protein Three-Dimensional Structure Graphs

Wajdi Dhifli, Engelbert Mephu Nguifo, Mondher Maddouri, 2019, J. Comput. Biol..

CROssBAR: Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations

Volkan Atalay, Rabie Saidi, Heval Atas, 2020, bioRxiv.