Shu Tadaka

发表

ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index

Kengo Kinoshita, Shu Tadaka, Yuki Kagaya, 2017, Plant & cell physiology.

Genome analyses for the Tohoku Medical Megabank Project towards establishment of personalized healthcare

K. Kinoshita, J. Yasuda, M. Nagasaki, 2018, Journal of biochemistry.

Regional genetic differences among Japanese populations and performance of genotype imputation using whole-genome reference panel of the Tohoku Medical Megabank Project

K. Kinoshita, J. Yasuda, M. Nagasaki, 2018, BMC Genomics.

ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression

Kengo Kinoshita, Shu Tadaka, Takeshi Obayashi, 2015, Plant & cell physiology.

Japonica Array NEO with increased genome-wide coverage and abundant disease risk SNPs

K. Kinoshita, J. Yasuda, G. Tamiya, 2020, bioRxiv.

3.5KJPNv2, An allele frequency panel of 3,552 Japanese Individuals

K. Kinoshita, J. Yasuda, M. Nagasaki, 2019, bioRxiv.

3.5KJPNv2: an allele frequency panel of 3552 Japanese individuals including the X chromosome

K. Kinoshita, J. Yasuda, M. Nagasaki, 2019, Human Genome Variation.

Estimating carrier frequencies of newborn screening disorders using a whole-genome reference panel of 3552 Japanese individuals

K. Kinoshita, J. Yasuda, M. Nagasaki, 2019, Human Genetics.

Novel candidates of pathogenic variants of the BRCA1 and BRCA2 genes in a 3,552 Japanese whole-genome sequence dataset (3.5KJPNv2)

K. Kinoshita, J. Yasuda, Y. Yamaguchi-Kabata, 2020, bioRxiv.

A Pilot Study for Return of Individual Pharmacogenomic Results to Population-Based Cohort Study Participants

M. Hiratsuka, S. Kuriyama, Y. Yamaguchi-Kabata, 2022, JMA journal.

Functional Assessment of 12 Rare Allelic CYP2C9 Variants Identified in a Population of 4773 Japanese Individuals

K. Kinoshita, M. Hiratsuka, A. Oda, 2021, Journal of personalized medicine.

Construction of a trio-based structural variation panel utilizing activated T lymphocytes and long-read sequencing technology

F. Katsuoka, N. Minegishi, Masayuki Yamamoto, 2022, Communications Biology.

Pathological variants in genes associated with disorders of sex development and central causes of hypogonadism in a whole-genome reference panel of 8380 Japanese individuals

J. Yasuda, Y. Yamaguchi-Kabata, G. Tamiya, 2022, Human Genome Variation.

Functional Characterization of 40 CYP3A4 Variants by Assessing Midazolam 1′-Hydroxylation and Testosterone 6β-Hydroxylation

K. Kinoshita, M. Hiratsuka, A. Oda, 2020, Drug Metabolism and Disposition.

Importance of Rare DPYD Genetic Polymorphisms for 5-Fluorouracil Therapy in the Japanese Population

M. Hiratsuka, N. Mano, N. Hirasawa, 2022, Frontiers in Pharmacology.

OP-PCPJ150168 1..9

Yuichi Aoki, T. Obayashi, Shu Tadaka, 2016 .

Identification of critical genetic variants associated with metabolic phenotypes of the Japanese population

K. Kinoshita, G. Tamiya, D. Saigusa, 2020, Communications biology.

Pathogenic mutations identified by a multimodality approach in 117 Japanese Fanconi anemia patients

K. Kinoshita, S. Miyano, Y. Shiraishi, 2019, Haematologica.

Comparison of Kit-Based Metabolomics with Other Methodologies in a Large Cohort, towards Establishing Reference Values

T. Bamba, K. Kinoshita, A. Hozawa, 2021, Metabolites.

ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index

Kengo Kinoshita, Shu Tadaka, Yuki Kagaya, 2018, Plant & cell physiology.

Construction and integration of three de novo Japanese human genome assemblies toward a population-specific reference

K. Kinoshita, J. Yasuda, G. Tamiya, 2019, bioRxiv.

A genotype imputation method for de-identified haplotype reference information by using recurrent neural network

Gen Tamiya, Shu Tadaka, Fumiki Katsuoka, 2020, PLoS Comput. Biol..

Enhancer remodeling promotes tumor-initiating activity in NRF2-activated non-small cell lung cancers

K. Kinoshita, A. Sakurada, Masayuki Yamamoto, 2020, Nature Communications.

Construction and integration of three de novo Japanese human genome assemblies toward a population-specific reference

J. Yasuda, F. Katsuoka, Junko Kawashima, 2021, Nature Communications.

Genetic loci for lung function in Japanese adults with adjustment for exhaled nitric oxide levels as airway inflammation indicator

S. Kuriyama, A. Hozawa, J. Sugawara, 2021, Communications Biology.

COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference

Kengo Kinoshita, Shu Tadaka, Yuki Kagaya, 2018, Nucleic Acids Res..

Novel candidates of pathogenic variants of the BRCA1 and BRCA2 genes from a dataset of 3,552 Japanese whole genomes (3.5KJPNv2)

K. Kinoshita, J. Yasuda, Y. Yamaguchi-Kabata, 2021, PloS one.

NCMine: Core-peripheral based functional module detection using near-clique mining

Kengo Kinoshita, Shu Tadaka, K. Kinoshita, 2016, Bioinform..

COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems

Kengo Kinoshita, Satoshi Ito, Shu Tadaka, 2014, Nucleic Acids Res..

COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals

Kengo Kinoshita, Satoshi Ito, Shu Tadaka, 2012, Nucleic Acids Res..

Pathological variants in genes associated with disorders of sex development and central causes of hypogonadism in a whole-genome reference panel of 8380 Japanese individuals

J. Yasuda, Y. Yamaguchi-Kabata, G. Tamiya, 2022, Human Genome Variation.

Estimation of the carrier frequencies and proportions of potential patients by detecting causative gene variants associated with autosomal recessive bone dysplasia using a whole-genome reference panel of Japanese individuals

K. Kinoshita, J. Yasuda, Y. Yamaguchi-Kabata, 2021, Human Genome Variation.

jMorp: Japanese Multi Omics Reference Panel

Kengo Kinoshita, Jin Inoue, Shu Tadaka, 2017, Nucleic Acids Res..

Identification of critical genetic variants associated with metabolic phenotypes of the Japanese population

D. Saigusa, S. Koshiba, F. Katsuoka, 2020, Communications Biology.

jMorp updates in 2020: large enhancement of multi-omics data resources on the general Japanese population

Kengo Kinoshita, Gen Tamiya, Shu Tadaka, 2020, Nucleic Acids Res..

ATTED-II in 2014: Evaluation of Gene Coexpression in Agriculturally Important Plants

Kengo Kinoshita, Shu Tadaka, Takeshi Obayashi, 2014, Plant & cell physiology.

Functional Characterization of 21 Rare Allelic CYP1A2 Variants Identified in a Population of 4773 Japanese Individuals by Assessing Phenacetin O-Deethylation

K. Kinoshita, M. Hiratsuka, A. Oda, 2021, Journal of personalized medicine.

Functional Characterization of 12 Dihydropyrimidinase Allelic Variants in Japanese Individuals for the Prediction of 5-Fluorouracil Treatment-Related Toxicity

M. Hiratsuka, A. Oda, T. Nakayoshi, 2022, Drug Metabolism and Disposition.

Estimating carrier frequencies of newborn screening disorders using a whole-genome reference panel of 3552 Japanese individuals

K. Kinoshita, J. Yasuda, M. Nagasaki, 2019, Human Genetics.

Running head: ATTED-II in 2014: Gene Coexpression Evaluation

Kengo Kinoshita, Satoshi Ito, Shu Tadaka, 2014 .

jMorp: Japanese Multi-Omics Reference Panel update report 2023.

S. Koshiba, R. Shimizu, F. Katsuoka, 2023, Nucleic acids research.

Next-generation sequencing analysis with a population-specific reference genome

Shu Tadaka, Yasunobu Okamura, J. Takayama, 2024, bioRxiv.

Functional significance of CYP2B6 gene rare allelic variants identified in Japanese individuals.

A. Oda, T. Nakayoshi, Shu Tadaka, 2024, Biochemical pharmacology.