Zhiqiang Ruan

发表

The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Huanming Yang, Jian Wang, Jun Wang, 2016, BMC Biology.

Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes

Ying Sun, Huanming Yang, Jian Wang, 2014, Nature Communications.

Prediction of Toxin Genes from Chinese Yellow Catfish Based on Transcriptomic and Proteomic Sequencing

Ying Sun, Q. Shi, Zhilong Lin, 2016, International journal of molecular sciences.

Adomaviruses: an emerging virus family provides insights into DNA virus evolution

E. Koonin, P. An, T. Ng, 2018, bioRxiv.

High-throughput identification of heavy metal binding proteins from the byssus of chinese green mussel (Perna viridis) by combination of transcriptome and proteome sequencing

Xu Deng, Wanshun Li, Q. Shi, 2019, PloS one.

Genome-wide association improves genomic selection for ammonia tolerance in the orange-spotted grouper (Epinephelus coioides)

Jieming Chen, Q. Shi, Xinxin You, 2021 .

A Comparative Genomic and Transcriptomic Survey Provides Novel Insights into N-Acetylserotonin Methyltransferase (ASMT) in Fish

Chao Bian, Q. Shi, S. Coon, 2017, Molecules.

Comparative Transcriptomic Study of Muscle Provides New Insights into the Growth Superiority of a Novel Grouper Hybrid

Ying Sun, Yong Zhang, Q. Shi, 2016, PloS one.

Identification of “Missing Link” Families of Small DNA Tumor Viruses

Anna K Belford, Michael J. Tisza, P. An, 2019, bioRxiv.

Genomic selection of orange-spotted grouper (Epinephelus coioides) based on multiplex PCR enrichment capture sequencing

Jieming Chen, Q. Shi, Xinxin You, 2022, Aquaculture and Fisheries.

The complete mitochondrial genome sequence of the giant mudskipper, Periophthalmodon schlosseri (Perciformes: gobiidae)

Jieming Chen, Yunhai Yi, Q. Shi, 2016, Mitochondrial DNA. Part B, Resources.

High conopeptide diversity in Conus striatus: Revealed by integration of two transcriptome sequencing platforms

Chao Peng, Q. Shi, Yabing Zhu, 2022, Frontiers in Marine Science.

The Complete Mitochondrial Genome of Glyptothorax macromaculatus Provides a Well-Resolved Molecular Phylogeny of the Chinese Sisorid Catfishes

Chao Bian, Q. Shi, Xinxin You, 2018, Genes.

The American Paddlefish Genome Provides Novel Insights into Chromosomal Evolution and Bone Mineralization in Early Vertebrates

Chao Bian, Kai Han, Chengcheng Shi, 2020, Molecular biology and evolution.

The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts

Huanming Yang, Jian Wang, Jun Wang, 2016, Scientific Reports.

Organism background , genome sequencing and assembly 62 1 . 1 Organism background

Huanming Yang, Jian Wang, Jun Wang, 2015 .

Genome and Transcriptome Sequencing of casper and roy Zebrafish Mutants Provides Novel Genetic Clues for Iridophore Loss

Chao Bian, W. Ge, Q. Shi, 2020, International journal of molecular sciences.

The first Conus genome assembly reveals a primary genetic central dogma of conopeptides in C. betulinus

Chao Bian, Jieming Chen, Ruobo Gu, 2021, Cell discovery.

A new species of bandy-bandy (Vermicella: Serpentes: Elapidae) from the Weipa region, Cape York, Australia.

K. Arbuckle, B. Fry, Q. Shi, 2018, Zootaxa.

A comparative transcriptomic study on developmental gonads provides novel insights into sex change in the protandrous black porgy (Acanthopagrus schlegelii).

P. Xu, Ruobo Gu, Q. Shi, 2019, Genomics.

The complete mitochondrial genome of Eastern paradise fish (Polynemus dubius)

Jia Li, Chao Bian, Hui-Mei Yu, 2016, Mitochondrial DNA. Part B, Resources.

High-throughput identification of novel conotoxins from the Chinese tubular cone snail (Conus betulinus) by multi-transcriptome sequencing

Chao Bian, Jieming Chen, Jie Bai, 2016, GigaScience.

Identification of Adomavirus Virion Proteins

Anna K Belford, Michael J. Tisza, P. An, 2018 .

The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Huanming Yang, Jian Wang, Jun Wang, 2016, BMC Biology.

Draft Genome of the Mirrorwing Flyingfish (Hirundichthys speculiger)

Chao Bian, Jieming Chen, Ruobo Gu, 2021, Frontiers in Genetics.

Assessing the genetic diversity of the critically endangered Chinese sturgeon Acipenser sinensis using mitochondrial markers and genome-wide single-nucleotide polymorphisms from RAD-seq

Chao Bian, P. Xu, Gangchun Xu, 2018, Science China Life Sciences.

Transcriptomic evidence of adaptive tolerance to high environmental ammonia in mudskippers.

Jieming Chen, Jia Li, Yunhai Yi, 2018, Genomics.

Complete mitochondrial genome of stripped eel catfish (Plotosus lineatus)

Jia Li, Hui-Mei Yu, Q. Shi, 2016, Mitochondrial DNA. Part B, Resources.

Comprehensive Transcriptional Changes in the Liver of Kanglang White Minnow (Anabarilius grahami) in Response to the Infection of Parasite Ichthyophthirius multifiliis

Chao Bian, Jieming Chen, Q. Shi, 2020, Animals : an open access journal from MDPI.

Genome resequencing of the orange-spotted grouper (Epinephelus coioides) for a genome-wide association study on ammonia tolerance

Chao Bian, Jieming Chen, Q. Shi, 2019, Aquaculture.

De novo assembly and comparative transcriptome analysis of the foot from Chinese green mussel (Perna viridis) in response to cadmium stimulation

Jieming Chen, Chao Peng, Q. Shi, 2017, PloS one.

Assessing the genetic diversity of the critically endangered Chinese sturgeon Acipenser sinensis using mitochondrial markers and genome-wide single-nucleotide polymorphisms from RAD-seq

Chao Bian, P. Xu, Gangchun Xu, 2018, Science China Life Sciences.

The complete mitochondrial genome of horn-nosed boxfish (Ostracion rhinorhynchos)

Q. Shi, Zhiqiang Ruan, Junmin Xu, 2016, Mitochondrial DNA. Part B, Resources.

The complete mitochondrial genome of Indonesian snakehead, Channa micropeltes (Channiformes, Channidae)

Q. Shi, Xinxin You, Zhiqiang Ruan, 2016, Mitochondrial DNA Part B: Resources.

The complete mitochondrial genome of Florida gar (Lepisosteus platyrhincus)

Jia Li, Hui-Mei Yu, Q. Shi, 2016, Mitochondrial DNA Part B: Resources.

Genomics comparisons of three chromosome-level mudskipper genome assemblies reveal molecular clues for water-to-land evolution and adaptation.

Chao Bian, Jieming Chen, Q. Shi, 2023, Journal of advanced research.

Additional file 5: Figure S15â S17. of The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Huanming Yang, Jian Wang, Jun Wang, 2016 .

Genome-Wide Identification, Sequence Alignment, and Transcription of Five Sex-Related Genes in Largemouth Bass (Micropterus Salmoides).

Xinxin You, Xinhui Zhang, Zhiqiang Ruan, 2024, Frontiers in bioscience.