D. Branzei

发表

Regulation of DNA repair throughout the cell cycle

Marco Foiani, M. Foiani, D. Branzei, 2008, Nature Reviews Molecular Cell Biology.

Interplay between the Smc5/6 complex and the Mph1 helicase in recombinational repair

Xiaolan Zhao, Yu-Hung Chen, D. Branzei, 2009, Proceedings of the National Academy of Sciences.

SUMOylation regulates Rad18-mediated template switch

M. Foiani, D. Branzei, Fabio Vanoli, 2008, Nature.

Essential Roles of the Smc5/6 Complex in Replication through Natural Pausing Sites and Endogenous DNA Damage Tolerance

A. Lengronne, P. Pasero, D. Branzei, 2015, Molecular cell.

Mus81-Mms4 endonuclease is an Esc2-STUbL-Cullin8 mitotic substrate impacting on genome integrity

Madhusoodanan Urulangodi, Irene Saugar, D. Branzei, 2020, Nature Communications.

Maintaining genome stability at the replication fork

Marco Foiani, M. Foiani, D. Branzei, 2010, Nature Reviews Molecular Cell Biology.

Ubc9- and Mms21-Mediated Sumoylation Counteracts Recombinogenic Events at Damaged Replication Forks

K. Ohta, Xiaolan Zhao, J. Sollier, 2006, Cell.

Integrating Rio1 activities discloses its nutrient-activated network in Saccharomyces cerevisiae

Esti Yeger-Lotem, O. Basha, G. Beznoussenko, 2018, Nucleic acids research.

High levels of BRC4 induced by a Tet-On 3G system suppress DNA repair and impair cell proliferation in vertebrate cells

D. Branzei, Takuya Abe, Dana Branzei, 2014, DNA repair.

Rad5 Recruits Error-Prone DNA Polymerases for Mutagenic Repair of ssDNA Gaps on Undamaged Templates.

Grant W. Brown, Zhaolei Zhang, D. Branzei, 2019, Molecular cell.

The SUMO protease SENP1 is required for cohesion maintenance and mitotic arrest following spindle poison treatment.

H. Arakawa, A. Motegi, S. Takeda, 2012, Biochemical and biophysical research communications.

Priming for tolerance and cohesion at replication forks

D. Branzei, B. Szakal, 2016, Nucleus.

DNA damage tolerance branches out toward sister chromatid cohesion

D. Branzei, 2015, Molecular & cellular oncology.

PCNA recruits cohesin loader Scc2/NIPBL to ensure sister chromatid cohesion

K. Hirota, Ryota Kawasumi, D. Branzei, 2022, bioRxiv.

Template Switching: From Replication Fork Repair to Genome Rearrangements

M. Foiani, D. Branzei, 2007, Cell.

SMC5/6 acts jointly with Fanconi anemia factors to support DNA repair and genome stability

F. Rosselli, A. Helbling-Leclerc, M. Takata, 2019, EMBO reports.

Replication forks and replication checkpoints in repair

M. Foiani, D. Branzei, Dana Branzei, 2006 .

S-phase checkpoint regulations that preserve replication and chromosome integrity upon dNTP depletion

M. Giannattasio, D. Branzei, Dana Branzei, 2017, Cellular and Molecular Life Sciences.

Interplay of replication checkpoints and repair proteins at stalled replication forks.

M. Foiani, D. Branzei, Dana Branzei, 2007, DNA repair.

The complex prevents genome instability induced by replication fork progression defects.

R. Kolodner, C. Putnam, Bin-zhong Li, 2018 .

The Mgs1/WRNIP1 ATPase is required to prevent a recombination salvage pathway at damaged replication forks

Irene Saugar, D. Branzei, A. Mayer, 2020, Science Advances.

Prevention of unwanted recombination at damaged replication forks

D. Branzei, Carl P. Lehmann, J. A. Tercero, 2020, Current Genetics.

DNA Replication Through Strand Displacement During Lagging Strand DNA Synthesis in Saccharomyces cerevisiae

M. Giannattasio, D. Branzei, Dana Branzei, 2019, Genes.

Timeless couples G‐quadruplex detection with processing by DDX11 helicase during DNA replication

J. Sale, L. Pellegrini, K. Stott, 2020, The EMBO journal.

Rad51-mediated replication of damaged templates relies on monoSUMOylated DDK kinase

M. Giannattasio, D. Branzei, S. Dusi, 2022, Nature communications.

Mutation in senataxin alters the mechanism of R-loop resolution in amyotrophic lateral sclerosis 4

D. Branzei, L. Gangwani, Juliana Cuartas, 2022, Brain : a journal of neurology.

Building up and breaking down: mechanisms controlling recombination during replication

D. Branzei, B. Szakal, Dana Branzei, 2017, Critical reviews in biochemistry and molecular biology.

Open Research Online SMC 5/6 acts jointly with Fanconi anemia factors to support DNA repair and genome stability

F. Rosselli, A. Helbling-Leclerc, M. Takata, 2022 .

A minimal threshold of FANCJ helicase activity is required for its response to replication stress or double-strand break repair

K. Shin‐ya, K. Neuman, H. Kitao, 2018, Nucleic acids research.

SPARTAN promotes genetic diversification of the immunoglobulin-variable gene locus in avian DT40 cells.

K. Hirota, S. Takeda, D. Branzei, 2018, DNA repair.

DDX11 loss causes replication stress and pharmacologically exploitable DNA repair defects

D. Branzei, N. K. Jegadesan, Dana Branzei, 2021, Proceedings of the National Academy of Sciences.

Chromatin determinants of the inner-centromere rely on replication factors with functions that impart cohesion

K. Shirahige, H. Arakawa, T. Hori, 2016, Oncotarget.

G2/M chromosome transactions essentially relying on Smc5/6

D. Branzei, Demis Menolfi, 2016, Cell cycle.

Proteins That Interact with the Werner Syndrome Gene Product

D. Branzei, T. Enomoto, Dana Branzei, 2004 .

DNA damage tolerance by recombination: Molecular pathways and DNA structures

D. Branzei, B. Szakal, Dana Branzei, 2016, DNA repair.

Visualization of recombination–mediated damage-bypass by template switching

Cindy Follonier, M. Lopes, M. Giannattasio, 2014, Nature Structural &Molecular Biology.

Computed structures of core eukaryotic protein complexes

S. Keeney, J. Rizo, S. Biggins, 2021, Science.

Structures of core eukaryotic protein complexes

J. Christopher Fromme, S. Keeney, S. Biggins, 2021, bioRxiv.

FANCJ DNA helicase is recruited to the replisome by AND-1 to ensure genome stability

A. Boavida, Diana Santos, F. Pisani, 2022, bioRxiv.

Warsaw breakage syndrome DDX11 helicase acts jointly with RAD17 in the repair of bulky lesions and replication through abasic sites

K. Hirota, M. Takata, Ryota Kawasumi, 2018, Proceedings of the National Academy of Sciences.

DNA Damage Tolerance Mechanisms Revealed from the Analysis of Immunoglobulin V Gene Diversification in Avian DT40 Cells

K. Hirota, D. Branzei, Takuya Abe, 2018, Genes.

During Replication Stress, Non-Smc Element 5 (Nse5) Is Required for Smc5/6 Protein Complex Functionality at Stalled Forks*

K. Shirahige, D. Branzei, Demis Menolfi, 2012, The Journal of Biological Chemistry.

Combined deficiency of Senataxin and DNA-PKcs causes DNA damage accumulation and neurodegeneration in spinal muscular atrophy

D. Branzei, K. Bhatia, L. Gangwani, 2018, Nucleic acids research.

Mgs1 and Rad18/Rad5/Mms2 are required for survival of Saccharomyces cerevisiae mutants with novel temperature/cold sensitive alleles of the DNA polymerase delta subunit, Pol31.

D. Branzei, M. Seki, T. Enomoto, 2006, DNA repair.

DNA helicases in homologous recombination repair.

D. Branzei, B. Szakal, 2021, Current opinion in genetics & development.

Concerted and differential actions of two enzymatic domains underlie Rad5 contributions to DNA damage tolerance

Xiaolan Zhao, H. Ulrich, D. Branzei, 2015, Nucleic acids research.

Replication and Recombination Factors Contributing to Recombination-Dependent Bypass of DNA Lesions by Template Switch

D. Branzei, B. Szakal, Fabio Vanoli, 2010, PLoS genetics.

Exploring and exploiting the systemic effects of deregulated replication licensing.

Vassilios Myrianthopoulos, Emmanuel Mikros, Dimitris Thanos, 2016, Seminars in cancer biology.

Ubiquitin family modifications and template switching

D. Branzei, Dana Branzei, 2011, FEBS letters.

Leaping forks at inverted repeats.

M. Foiani, D. Branzei, 2010, Genes & development.

Sgs1 function in the repair of DNA replication intermediates is separable from its role in homologous recombinational repair

R. Rothstein, Kara A. Bernstein, Erika Shor, 2009, The EMBO journal.

Rad52 sumoylation and its involvement in the efficient induction of homologous recombination.

H. Ogiwara, A. Ui, D. Branzei, 2008, DNA repair.

SIRFing the replication fork: Assessing protein interactions with nascent DNA

M. Giannattasio, D. Branzei, 2018, The Journal of cell biology.

The DNA damage response during DNA replication.

M. Foiani, D. Branzei, Dana Branzei, 2005, Current opinion in cell biology.

SMC complexes are guarded by the SUMO protease Ulp2 against SUMO-chain-mediated turnover.

D. Branzei, Ivan Psakhye, 2021, Cell reports.

SMC Complexes Are Guarded by the SUMO Protease Ulp2 Against SUMO-Chain-Mediated Turnover

D. Branzei, Ivan Psakhye, Dana Branzei, 2020, bioRxiv.

The Swr1 chromatin-remodeling complex prevents genome instability induced by replication fork progression defects

R. Kolodner, C. Putnam, Bin-zhong Li, 2018, Nature Communications.

Error-Free DNA Damage Tolerance and Sister Chromatid Proximity during DNA Replication Rely on the Polα/Primase/Ctf4 Complex

M. Lopes, D. Branzei, Fabio Vanoli, 2015, Molecular cell.

Vertebrate CTF18 and DDX11 essential function in cohesion is bypassed by preventing WAPL-mediated cohesin release

K. Hirota, Ryota Kawasumi, D. Branzei, 2021, Genes & development.

AND-1 fork protection function prevents fork resection and is essential for proliferation

K. Hirota, M. Giannattasio, Ryota Kawasumi, 2018, Nature Communications.

Esc2 promotes Mus81 complex-activity via its SUMO-like and DNA binding domains

Madhusoodanan Urulangodi, M. Lisby, D. Branzei, 2016, Nucleic acids research.

Swi2/Snf2-like protein Uls1 functions in the Sgs1-dependent pathway of maintenance of rDNA stability and alleviation of replication stress.

R. Wysocki, D. Branzei, B. Szakal, 2014, DNA repair.

A cell cycle-regulated Slx4–Dpb11 complex promotes the resolution of DNA repair intermediates linked to stalled replication

B. Habermann, S. Schilbach, Joao Matos, 2014, Genes & development.

DNA repair intermediates linked to stalled replication Dpb 11 complex promotes the resolution of − A cell cycle-regulated Slx 4 Material Supplemental

B. Habermann, S. Schilbach, Joao Matos, 2014 .

Premature Cdk1/Cdc5/Mus81 pathway activation induces aberrant replication and deleterious crossover

D. Branzei, B. Szakal, Dana Branzei, 2013, The EMBO journal.

Timeless couples G quadruplex detection with processing by DDX11 during DNA replication

J. Sale, L. Pellegrini, K. Stott, 2019, bioRxiv.

Local regulation of the Srs2 helicase by the SUMO-like domain protein Esc2 promotes recombination at sites of stalled replication

Madhusoodanan Urulangodi, J. Sollier, D. Branzei, 2015, Genes & development.

DNA bending facilitates the error-free DNA damage tolerance pathway and upholds genome integrity

S. Jentsch, Madhusoodanan Urulangodi, E. Rajakumara, 2014, The EMBO journal.

Parental histone deposition on the replicated strands promotes error-free DNA damage tolerance and regulates drug resistance

M. Giannattasio, D. Branzei, S. Dusi, 2022, Genes & development.

The Saccharomyces cerevisiae Esc2 and Smc5-6 proteins promote sister chromatid junction-mediated intra-S repair.

S. Jackson, R. Driscoll, J. Sollier, 2009, Molecular biology of the cell.

DNA damage tolerance.

D. Branzei, Ivan Psakhye, Dana Branzei, 2016, Current opinion in cell biology.

Noncanonical role of the 9-1-1 clamp in the error-free DNA damage tolerance pathway.

S. Jentsch, Grzegorz Sienski, G. I. Karras, 2013, Molecular cell.

ESCO1/2's roles in chromosome structure and interphase chromatin organization

H. Arakawa, K. Hirota, M. Garrè, 2017, Genes & development.

Smc5/6 Mediated Sumoylation of the Sgs1-Top3-Rmi1 Complex Promotes Removal of Recombination Intermediates

Grant W. Brown, Nikko P. Torres, P. Sung, 2016, Cell reports.

RecQ helicases queuing with Srs2 to disrupt Rad51 filaments and suppress recombination.

M. Foiani, D. Branzei, Dana Branzei, 2007, Genes & development.

Ubc9 is required for damage-tolerance and damage-induced interchromosomal homologous recombination in S. cerevisiae.

D. Branzei, F. Onoda, M. Seki, 2004, DNA repair.

The checkpoint response to replication stress.

M. Foiani, D. Branzei, 2009, DNA repair.

SUMO-Chain-Regulated Proteasomal Degradation Timing Exemplified in DNA Replication Initiation

D. Branzei, Ivan Psakhye, Federica Castellucci, 2019, Molecular cell.

Cohesion by topology: sister chromatids interlocked by DNA.

M. Foiani, D. Branzei, Rodrigo Bermejo, 2008, Genes & development.

DNA damage checkpoint and recombinational repair differentially affect the replication stress tolerance of smc6 mutants

Xiaolan Zhao, Yu-Hung Chen, D. Branzei, 2013, Molecular biology of the cell.

Characterization of the slow-growth phenotype of S. cerevisiae Whip/Mgs1 Sgs1 double deletion mutants.

D. Branzei, F. Onoda, M. Seki, 2002, DNA repair.

The product of Saccharomyces cerevisiae WHIP/MGS1, a gene related to replication factor C genes, interacts functionally with DNA polymerase δ

D. Branzei, F. Onoda, M. Seki, 2002, Molecular Genetics and Genomics.

A Novel Protein Interacts with the Werner's Syndrome Gene Product Physically and Functionally*

T. Masuko, A. Shimamoto, Y. Furuichi, 2001, The Journal of Biological Chemistry.

The Rad53 signal transduction pathway: Replication fork stabilization, DNA repair, and adaptation.

M. Foiani, D. Branzei, Dana Branzei, 2006, Experimental cell research.

The Smc5-Smc6 Complex Regulates Recombination at Centromeric Regions and Affects Kinetochore Protein Sumoylation during Normal Growth

Xiaolan Zhao, Xiaolan Zhao, D. Branzei, 2012, PloS one.

The Smc5/6 Complex and Esc2 Influence Multiple Replication-associated Recombination Processes in Saccharomyces cerevisiae

Xiaolan Zhao, Yu-Hung Chen, D. Branzei, 2010, Molecular biology of the cell.

Rad18/Rad5/Mms2‐mediated polyubiquitination of PCNA is implicated in replication completion during replication stress

D. Branzei, M. Seki, T. Enomoto, 2004, Genes to cells : devoted to molecular & cellular mechanisms.

AND-1 fork protection function prevents fork resection and is essential for proliferation

K. Hirota, M. Giannattasio, Ryota Kawasumi, 2018, Nature Communications.

Rtt107 Is a Multi-functional Scaffold Supporting Replication Progression with Partner SUMO and Ubiquitin Ligases.

Wenyi Feng, Xiaolan Zhao, W. Tan, 2015, Molecular cell.

Error‐free DNA damage tolerance pathway is facilitated by the Irc5 translocase through cohesin

R. Wysocki, T. Bakowski, D. Branzei, 2018, The EMBO journal.

Rad5-dependent DNA Repair Functions of the Saccharomyces cerevisiae FANCM Protein Homolog Mph1*

P. Sung, K. Myung, D. Branzei, 2012, The Journal of Biological Chemistry.

The Budding Yeast Ubiquitin Protease Ubp7 Is a Novel Component Involved in S Phase Progression*

S. Böhm, Benjamin W Herken, Kara A. Bernstein, 2016, The Journal of Biological Chemistry.

Smc5/6 functions with Sgs1-Top3-Rmi1 to complete chromosome replication at natural pause sites

M. Giannattasio, D. Branzei, B. Szakal, 2021, Nature Communications.

Rad51-mediated replication of damaged templates relies on monoSUMOylated DDK kinase

M. Giannattasio, D. Branzei, S. Dusi, 2022, Nature Communications.

Selective modulation of the functions of a conserved DNA motor by a histone fold complex

P. Sung, H. Niu, Xiaolan Zhao, 2015, Genes & development.

The Swr1 chromatin-remodeling complex prevents genome instability induced by replication fork progression defects

R. Kolodner, C. Putnam, Bin-zhong Li, 2018, Nature Communications.

Backgrounds of Arithmetic and Geometry: An Introduction

R. Miron, D. Branzei, 1995 .

PCNA recruits cohesin loader Scc2 to ensure sister chromatid cohesion

K. Hirota, Ryota Kawasumi, D. Branzei, 2023, Nature Structural & Molecular Biology.