B. Panda

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Prediction of a plant intracellular metabolite content class using image-based deep learning

N. Krishnan, B. Panda, 2018, bioRxiv.

Role of the N6-methyladenosine RNA mark in gene regulation and its implications on development and disease.

Radhika Das, Binay Panda, Radhika Das, 2015, Briefings in functional genomics.

An Improved Genome Assembly of Azadirachta indica A. Juss.

Saurabh Gupta, N. Krishnan, P. Jain, 2016, G3: Genes, Genomes, Genetics.

An Improved Genome Assembly of Azadirachta indica

Saurabh Gupta, N. Krishnan, P. Jain, 2016 .

An Improved Genome Assembly of Azadirachta indica A. Juss

Saurabh Gupta, N. Krishnan, P. Jain, 2015, bioRxiv.

A Minimal DNA Methylation Signature in Oral Tongue Squamous Cell Carcinoma Links Altered Methylation with Tumor Attributes

A. Suresh, M. Kuriakose, N. Krishnan, 2016, Molecular Cancer Research.

Integrated analysis links TP53, NOTCH, SLC38A and 11p with survival in patients with oral tongue squamous cell carcinoma

Costerwell Khyriem, Saurabh Gupta, A. Suresh, 2015, bioRxiv.

A minimal set of internal control genes for gene expression studies in head and neck squamous cell carcinoma

A. Suresh, M. Kuriakose, M. Pareek, 2017, bioRxiv.

A minimal set of internal control genes for gene expression studies in head and neck squamous cell carcinoma

A. Suresh, M. Kuriakose, M. Pareek, 2017, bioRxiv.

CAFE MOCHA: An Integrated Platform for Discovering Clinically Relevant Molecular Changes in Cancer-An Example of Distant Metastasis- and Recurrence-Linked Classifiers in Head and Neck Squamous Cell Carcinoma.

N. Krishnan, B. Panda, J. Hariharan, 2018, JCO clinical cancer informatics.

CAFE MOCHA: An Integrated Platform for Discovering Clinically Relevant Molecular Changes in Cancer; an Example of Distant Metastasis and Recurrence-linked Classifiers in Head and Neck Squamous Cell Carcinoma

N. Krishnan, B. Panda, J. Hariharan, 2017, bioRxiv.

Integrated analysis of oral tongue squamous cell carcinoma identifies key variants and pathways linked to risk habits, HPV, clinical parameters and tumor recurrence

Costerwell Khyriem, Saurabh Gupta, A. Suresh, 2015, bioRxiv.

Integrated analysis of oral tongue squamous cell carcinoma identifies key variants and pathways linked to risk habits, HPV, clinical parameters and tumor recurrence

Costerwell Khyriem, Saurabh Gupta, A. Suresh, 2015, bioRxiv.

Big Data and Cancer Research

B. Panda, 2016 .

Photosystem genes in chloroplast and their interacting partners: A case for molecular adaptation to carnivory in Nepenthaceae

N. Krishnan, B. Panda, 2022, bioRxiv.

Whither genomic diagnostics tests in India?

B. Panda, 2012, Indian journal of medical and paediatric oncology : official journal of Indian Society of Medical & Paediatric Oncology.

A draft of the genome and four transcriptomes of a medicinal and pesticidal angiosperm Azadirachta indica

N. Krishnan, P. Jain, B. Panda, 2012, BMC Genomics.

Augmenting transcriptome assembly by combining de novo and genome-guided tools

N. Krishnan, P. Jain, B. Panda, 2013, PeerJ.

Sample preparation method considerations for integrated transcriptomic and proteomic analysis of tumors

Lavanya Balakrishnan, S. Chavan, R. Sirdeshmukh, 2017, Proteomics. Clinical applications.

Single and multi-analyte deep learning-based analysis framework for class prediction in biological images

N. Krishnan, B. Panda, Saroj Kumar, 2022, bioRxiv.

Application of Excess Nitrogen, Phosphorus, and Potassium Fertilizers Leads to Lowering of Grain Iron Content in High-Yielding Tropical Rice

B. Panda, A. Das, P. K. Mohapatra, 2012 .

Effect of Panicle Morphology on Grain Filling and Rice Yield: Genetic Control and Molecular Regulation

B. Panda, A. Parida, Gyanasri Sahu, 2022, Frontiers in Genetics.

1-MCP treatment enhanced expression of genes controlling endosperm cell division and starch biosynthesis for improvement of grain filling in a dense-panicle rice cultivar.

B. Panda, P. K. Mohapatra, B. P. Shaw, 2016, Plant science : an international journal of experimental plant biology.

Iron homeostasis in tropical indica rice (Oryza sativa L.) cultivars having contrasting grain iron concentration

B. Panda, A. Das, P. K. Mohapatra, 2016, Journal of Plant Biochemistry and Biotechnology.

IRON STRESS INDUCES PRIMARY AND SECONDARY MICRONUTRIENT STRESSES IN HIGH YIELDING TROPICAL RICE

S. Sharma, B. Panda, A. Das, 2012 .

Functional genomics screen with pooled shRNA library and gene expression profiling with extracts of Azadirachta indica identify potential pathways for therapeutic targets in head and neck squamous cell carcinoma

S. Ishikawa, H. Katoh, M. Pareek, 2018, bioRxiv.

Grain density and its impact on grain filling characteristic of rice: mechanistic testing of the concept in genetically related cultivars

S. Das, B. Panda, S. K. Dash, 2018, Scientific Reports.

High ethylene production slackens seed filling in compact panicled rice cultivar

B. Panda, P. K. Mohapatra, R. Panigrahi, 2009, Plant Growth Regulation.

Identification and Characterization of Differentially Expressed Genes in Inferior and Superior Spikelets of Rice Cultivars with Contrasting Panicle-Compactness and Grain-Filling Properties

B. Panda, P. K. Mohapatra, B. P. Shaw, 2015, PloS one.

A draft of the genome and four transcriptomes of a medicinal and pesticidal angiosperm Azadirachta indica

N. Krishnan, P. Jain, B. Panda, 2012, BMC Genomics.

Plasticity of Tiller Dynamics in Wild Rice Oryza rufipogon Griff.: A Strategy for Resilience in Suboptimal Environments

B. Panda, P. K. Mohapatra, E. Kariali, 2011 .

Comparative analyses of putative toxin gene homologs from an Old World viper, Daboia russelii

N. Krishnan, B. Panda, 2017, PeerJ.

Comparative analyses of toxin-associated gene homologs from an Old World viper, Daboia russelii

N. Krishnan, B. Panda, 2017, bioRxiv.

De novo sequencing and assembly of Azadirachta indica fruit transcriptome

N. Krishnan, P. Jain, B. Panda, 2011 .

Validation of copy number variation analysis for next-generation sequencing diagnostics

Binay Panda, Christopher Campbell, Saurabh Gupta, 2017, European Journal of Human Genetics.

SInC: an accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence data

Saurabh Gupta, Swetansu Pattnaik, Binay Panda, 2013, BMC Bioinformatics.

The Draft Genome and Transcriptome of Amaranthus hypochondriacus: A C4 Dicot Producing High-Lysine Edible Pseudo-Cereal

Saurabh Gupta, B. Panda, B. Choudhary, 2014, DNA research : an international journal for rapid publication of reports on genes and genomes.

Molecular findings from 537 individuals with inherited retinal disease

I. C. Lloyd, J. Lamb, S. Daiger, 2016, Journal of Medical Genetics.

The mutational landscape of early‐ and typical‐onset oral tongue squamous cell carcinoma

Benjamin R Campbell, Arnoud Boot, S. Rozen, 2020, Cancer.

Gene and miRNA expression changes in squamous cell carcinoma of larynx and hypopharynx

A. Suresh, M. Kuriakose, P. Jain, 2015, Genes & cancer.

Biochemical and molecular processes contributing to grain filling and yield in rice.

B. Panda, A. Parida, Gyanasri Sahu, 2022, Plant physiology and biochemistry : PPB.

Variation in Senescence Pattern of Different Classes of Rice Tillers and Its Effect on Panicle Biomass Growth and Grain Yield

B. Panda, P. K. Mohapatra, R. Panigrahi, 2012 .

Spikelet-specific variation in ethylene production and constitutive expression of ethylene receptors and signal transducers during grain filling of compact- and lax-panicle rice (Oryza sativa) cultivars.

B. Panda, P. K. Mohapatra, B. P. Shaw, 2015, Journal of plant physiology.

Detection of High-Risk Human Papillomavirus in Oral Cavity Squamous Cell Carcinoma Using Multiple Analytes and Their Role in Patient Survival

B. L. James, A. Suresh, M. Kuriakose, 2018, Journal of global oncology.

Study of expressions of miRNAs in the spikelets based on their spatial location on panicle in rice cultivars provided insight into their influence on grain development.

B. Panda, S. Mishra, S. K. Dash, 2020, Plant physiology and biochemistry : PPB.

Cell cycle events and expression of cell cycle regulators are determining factors in differential grain filling in rice spikelets based on their spatial location on compact panicles.

B. Panda, S. K. Dash, Gyanasri Sahu, 2020, Functional plant biology : FPB.

Biochemical and molecular characterisation of exogenous cytokinin application on grain filling in rice

B. Panda, S. K. Dash, B. P. Shaw, 2018, BMC Plant Biology.

Controlling the trade-off between spikelet number and grain filling: the hierarchy of starch synthesis in spikelets of rice panicle in relation to hormone dynamics.

T. Lafarge, B. Panda, P. K. Mohapatra, 2019, Functional plant biology : FPB.

High-risk human papillomavirus in oral cavity squamous cell carcinoma: HPV and oral cavity tumors

B. L. James, A. Suresh, M. Kuriakose, 2016, bioRxiv.

Comparative proteomics of the superior and inferior spikelets at the early grain filling stage in rice cultivars contrast for panicle compactness and ethylene evolution.

B. Panda, P. K. Mohapatra, B. P. Shaw, 2016, Journal of plant physiology.

Artificial intelligence and real-world data for drug and food safety - A regulatory science perspective.

Kern Rei Chng, W. Tong, H. Fang, 2023, Regulatory toxicology and pharmacology : RTP.

Iron Nutrition vis-à-vis Aconitase Activity and Ferritin Accumulation in Tropical Indica Rice Cultivars Differing in Grain Iron Concentration

B. Panda, A. Das, P. K. Mohapatra, 2014 .

Biochemical and molecular characterisation of salt-induced poor grain filling in a rice cultivar.

B. Panda, P. K. Mohapatra, B. P. Shaw, 2016, Functional Plant Biology.

Biochemical and molecular characterisation of exogenous cytokinin application on grain filling in rice

B. Panda, S. K. Dash, B. P. Shaw, 2018, BMC Plant Biology.

Corrigendum to: Controlling the trade-off between spikelet number and grain filling: the hierarchy of starch synthesis in spikelets of rice panicle in relation to hormone dynamics.

T. Lafarge, B. Panda, P. K. Mohapatra, 2019, Functional plant biology : FPB.

Customisation of the Exome Data Analysis Pipeline Using a Combinatorial Approach

Swetansu Pattnaik, Binay Panda, B. Panda, 2012, PloS one.

COPS: A Sensitive and Accurate Tool for Detecting Somatic Copy Number Alterations Using Short-Read Sequence Data from Paired Samples

Binay Panda, Neeraja M. Krishnan, N. Krishnan, 2012, PloS one.

Grain density and its impact on grain filling characteristic of rice: mechanistic testing of the concept in genetically related cultivars

S. Das, B. Panda, S. K. Dash, 2018, Scientific Reports.

Building flexible and robust analysis frameworks for molecular subtyping of cancers

F. O. Bagger, Kristoffer Vitting-Seerup, M. Rossing, 2023, bioRxiv.

MUSIC: A hybrid computing environment for burrows-wheeler alignment for massive amount of short read sequence data

Saurabh Gupta, Sanjoy Chaudhury, Binay Panda, 2014, 2nd Middle East Conference on Biomedical Engineering.

Building Biofoundry India: challenges and path forward

Binay Panda, Pawan K Dhar, P. Dhar, 2021, Synthetic biology.

Augmenting transcriptome assembly by combining de novo and genome-guided tools

N. Krishnan, P. Jain, B. Panda, 2013, PeerJ.

RNAtor: an Android-based application for biologists to plan RNA sequencing experiments

N. Krishnan, B. Panda, Shruti Kane, 2016, bioRxiv.