Mihkel Vaher

StrainSeeker: fast identification of bacterial strains from raw sequencing reads using user-provided guide trees

Reidar Andreson, Lauris Kaplinski, Maido Remm, 2017, PeerJ.

PlasmidSeeker: identification of known plasmids from bacterial whole genome sequencing reads

Maido Remm, Mikk Puustusmaa, M. Möls, 2018, PeerJ.

StrainSeeker: fast identification of bacterial strains from unassembled sequencing reads using user-provided guide trees

M. Möls, M. Remm, P. Naaber, 2016, bioRxiv.

Exploring Barmah Forest virus pathogenesis: molecular tools to investigate non-structural protein 3 nuclear localization and viral genomic determinants of replication

G. Moseley, A. Merits, Mihkel Vaher, 2024, mBio.