S. Sivakumar

发表

TBX2 subfamily suppression in lung cancer pathogenesis: a high-potential marker for early detection

P. Scheet, Y. Yatabe, J. Fujimoto, 2017, Oncotarget.

Large-scale analysis of acquired chromosomal alterations in non-tumor samples from patients with cancer

P. Scheet, K. Chang, C. Huff, 2019, Nature Biotechnology.

Strategies for identification of somatic variants using the Ion Torrent deep targeted sequencing platform

Jing Wang, Aditya Deshpande, Wenhua Lang, 2018, BMC Bioinformatics.

Driver Mutations in Normal Airway Epithelium Elucidate Spatiotemporal Resolution of Lung Cancer.

P. Scheet, Jing Wang, I. Wistuba, 2019, American journal of respiratory and critical care medicine.

Integrative Analysis of a Large Real-World Cohort of Small Cell Lung Cancer Identifies Distinct Genetic Subtypes and Insights into Histologic Transformation

P. Hegde, J. Sage, G. Frampton, 2022, bioRxiv.

Augmented Lipocalin-2 Is Associated with Chronic Obstructive Pulmonary Disease and Counteracts Lung Adenocarcinoma Development

P. Scheet, I. Wistuba, Kyle Chang, 2020 .

Concordance of DNA Repair Gene Mutations in Paired Primary Prostate Cancer Samples and Metastatic Tissue or Cell-Free DNA.

P. Nelson, C. Pritchard, N. De Sarkar, 2021, JAMA oncology.

ROS1 genomic rearrangements are rare actionable drivers in microsatellite stable colorectal cancer

E. Sokol, A. Kahraman, C. Britschgi, 2022, International journal of cancer.

Comprehensive pan-cancer genomic landscape of KRAS altered cancers and real-world outcomes in solid tumors

P. Hegde, E. Sokol, S. Ou, 2022, NPJ precision oncology.

Tissue and liquid biopsy profiling reveal convergent tumor evolution and therapy evasion in breast cancer

P. Hegde, E. Sokol, G. Frampton, 2022, Nature Communications.

Genomic landscape of allelic imbalance in premalignant atypical adenomatous hyperplasias of the lung

Noah A. Kallsen, Shanna A. Peyton, P. A. Futreal, 2019, EBioMedicine.

COMPUTATIONAL GENOMIC MODELS FOR SPATIO-TEMPORAL INVESTIGATION OF EARLY LUNG CANCER PATHOLOGY

S. Sivakumar, 2019 .

Genome-Wide Gene Expression Changes in the Normal-Appearing Airway during the Evolution of Smoking-Associated Lung Adenocarcinoma

P. Scheet, I. Wistuba, J. Fujimoto, 2018, Cancer Prevention Research.

Genomic Landscape of Atypical Adenomatous Hyperplasia Reveals Divergent Modes to Lung Adenocarcinoma.

P. A. Futreal, P. Scheet, I. Wistuba, 2017, Cancer research.

Pan cancer patterns of allelic imbalance from chromosomal aberrations in 33 tumor types

P. Scheet, F. A. San Lucas, S. Sivakumar, 2019, bioRxiv.

Strategies for identification of somatic variants using the Ion Torrent deep targeted sequencing platform

P. Scheet, Jing Wang, Jiexin Zhang, 2018, BMC Bioinformatics.

Intra-patient stability of tumor mutational burden from tissue biopsies at different time points in advanced cancers

G. Frampton, A. Goodman, R. Kurzrock, 2021, Genome medicine.

Histiocytic and Dendritic Cell Sarcomas of Hematopoietic Origin Share Targetable Genomic Alterations Distinct from Follicular Dendritic Cell Sarcoma

M. Selig, E. Severson, S. Sadigh, 2021, The oncologist.

Rapid and powerful detection of subtle allelic imbalance from exome sequencing data with hapLOHseq

Smruthy Sivakumar, F. Anthony San Lucas, Jerry Fowler, 2016, Bioinform..

Multiple PIK3CA mutation clonality correlates with outcomes in taselisib + fulvestrant-treated ER+/HER2–, PIK3CA-mutated breast cancers

E. Sokol, T. Wilson, K. Hutchinson, 2023, Genome Medicine.

Biology and Targetability of the Extended Spectrum of PIK3CA Mutations Detected in Breast Carcinoma

E. Sokol, H. Rugo, R. Madison, 2022, Clinical cancer research : an official journal of the American Association for Cancer Research.

Abstract 2594: Optimizing the replication of cancer genomics workflows: case studies

P. Scheet, Aditya Deshpande, F. S. Lucas, 2017 .

Comprehensive genomic profiling and treatment patterns across ancestries in advanced prostate cancer: a large-scale retrospective analysis.

G. Frampton, B. Mahal, J. Newberg, 2023, The Lancet. Digital health.

Liquid biopsy comprehensive genomic profiling of lung cancer in the Italian population: A real-world experience.

E. Sokol, M. Tiseo, M. Montesion, 2023, Lung cancer.

Augmented Lipocalin-2 is Associated with COPD and Counteracts Lung Adenocarcinoma Development.

P. Scheet, I. Wistuba, A. Reuben, 2020, American journal of respiratory and critical care medicine.

Genomic Landscape of Atypical Adenomatous Hyperplasia Reveals Divergent Modes to Lung Adenocarcinoma.

P. Scheet, I. Wistuba, Y. Yatabe, 2017, Cancer research.

Genetic Heterogeneity and Tissue-specific Patterns of Tumors with Multiple PIK3CA Mutations

E. Sokol, L. Cantley, K. Hutchinson, 2023, Clinical cancer research : an official journal of the American Association for Cancer Research.

Unique Spectrum of Activating BRAF Alterations in Prostate Cancer

H. Ebrahimi, N. Agarwal, B. Mahal, 2023, Clinical cancer research : an official journal of the American Association for Cancer Research.

Increased KRAS G12C Prevalence, High Tumor Mutational Burden, and Specific Mutational Signatures Are Associated With MUTYH Mutations: A Pan-Cancer Analysis

E. Sokol, R. Kurzrock, S. Sivakumar, 2023, The oncologist.