Theodore Alexandrov

发表

Automatic Acquisition of the Argument-Predicate Relations from a Frame-Annotated Corpus

Tonio Wandmacher, Ekaterina Ovchinnikova, Theodore Alexandrov, 2009, EMNLP 2009.

3D Visualisierung von Organismen

Stefan Heldmann, Bernd Fischer, Theodore Alexandrov, 2012, GI-Jahrestagung.

Efficient spatial segmentation of large imaging mass spectrometry datasets with spatially aware clustering

Theodore Alexandrov, Jan Hendrik Kobarg, J. H. Kobarg, 2011, Bioinform..

Curatr: a web application for creating, curating, and sharing a mass spectral library

Andrew Palmer, Theodore Alexandrov, Prasad Phapale, 2017 .

The Young PI Buzz: Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013

Manuel Corpas, Venkata P. Satagopam, Theodore Alexandrov, 2013, PLoS Comput. Biol..

Learning How to Run a Lab: Interviews with Principal Investigators

Philip E. Bourne, Theodore Alexandrov, 2013, PLoS Comput. Biol..

METASPACE: A community-populated knowledge base of spatial metabolomes in health and disease

Theodore Alexandrov, Dominik Fay, Lachlan Stuart, 2019, bioRxiv.

Singular Spectrum Analysis of Gene Expression Profiles of Early Drosophila embryo: Exponential-in-Distance Patterns

Alexander V. Spirov, Nina Golyandina, Theodore Alexandrov, 2008, J. Electr. Comput. Eng..

Using collective expert judgements to evaluate quality measures of mass spectrometry images

Olga Vitek, Ekaterina Ovchinnikova, Andrew Palmer, 2015, Bioinform..

Testing for presence of known and unknown molecules in imaging mass spectrometry

Andreas Bartels, Theodore Alexandrov, T. Alexandrov, 2013, Bioinform..

Computational Metabolomics: Identification, Interpretation, Imaging (Dagstuhl Seminar 17491)

Pieter C. Dorrestein, Emma Schymanski, Sebastian Böcker, 2017, Dagstuhl Reports.

Recognizing off-sample mass spectrometry images with machine and deep learning

Theodore Alexandrov, Katja Ovchinnikova, Lachlan Stuart, 2019, bioRxiv.

Method and apparatus for computer-assisted processing of a digitized image as well as machine-readable data carrier

Theodore Alexandrov, Peter Maass, Dennis Trede, 2011 .

MALDI imaging mass spectrometry: statistical data analysis and current computational challenges

Theodore Alexandrov, T. Alexandrov, 2012, BMC Bioinformatics.

Measuring Gene Expression Noise in Early Drosophila Embryos: The Highly Dynamic Compartmentalized Micro-environment of the Blastoderm Is One of the Main Sources of Noise

David M. Holloway, Alexander V. Spirov, Nina Golyandina, 2012, EvoBIO.

Benchmark datasets for 3D MALDI- and DESI-imaging mass spectrometry

Franziska Hoffmann, Orlando Guntinas-Lichius, Kirill Veselkov, 2015, GigaScience.

On the Importance of Mathematical Methods for Analysis of MALDI-Imaging Mass Spectrometry Data

Theodore Alexandrov, Herbert Thiele, Dennis Trede, 2012, J. Integr. Bioinform..

Biomarker discovery in MALDI-TOF serum protein profiles using discrete wavelet transformation

Bart J. A. Mertens, Theodore Alexandrov, Herbert Thiele, 2009, Bioinform..

Efficient Spatial Segmentation of Hyper-spectral 3D Volume Data

Theodore Alexandrov, Jan Hendrik Kobarg, J. H. Kobarg, 2013, Algorithms from and for Nature and Life.

Data-Driven and Ontological Analysis of FrameNet for Natural Language Reasoning

Stefano Borgo, Alessandro Oltramari, Laure Vieu, 2010, LREC.

Automatic Acquisition of the

Tonio Wandmacher, Ekaterina Ovchinnikova, Theodore Alexandrov, 2009, EMNLP.

Spatial segmentation of imaging mass spectrometry data with edge-preserving image denoising and clustering.

Theodore Alexandrov, Herbert Thiele, Peter Maass, 2010, Journal of proteome research.

Bioimage informatics Testing for presence of known and unknown molecules in imaging mass spectrometry

Andreas Bartels, Theodore Alexandrov, T. Alexandrov, 2013 .

Self-taught Learning for Classification of Mass Spectrometry Data: A Case Study of Colorectal Cancer

Theodore Alexandrov, T. Alexandrov, 2009, GCB.

Curatr: a web application for creating, curating and sharing a mass spectral library

Andrew Palmer, Theodore Alexandrov, Prasad Phapale, 2017, Bioinform..

3D molecular cartography using LC–MS facilitated by Optimus and 'ili software

Theodore Alexandrov, Pieter C Dorrestein, Alexey V Melnik, 2017, Nature Protocols.

SparseCodePicking: feature extraction in mass spectrometry using sparse coding algorithms

Theodore Alexandrov, Stefan Schiffler, Klaus Steinhorst, 2009, 0907.3426.

Magnification of Label Maps With a Topology-Preserving Level-Set Method

Chen Sagiv, Theodore Alexandrov, Dennis Trede, 2012, IEEE Transactions on Image Processing.

Dependence of accuracy of ESPRIT estimates on signal eigenvalues: the case of a noisy sum of two real exponentials.

Nina Golyandina, Theodore Alexandrov, Alexey Timofeyev, 2009, Proceedings in applied mathematics and mechanics.

A Two-Step Soft Segmentation Procedure for MALDI Imaging Mass Spectrometry Data

Sergey I. Nikolenko, Theodore Alexandrov, Peter Maass, 2012, GCB.

Two-Exponential Models of Gene Expression Patterns for Noisy Experimental Data

Nina Golyandina, Theodore Alexandrov, Alexander Spirov, 2017, J. Comput. Biol..

Mass spectral molecular networking of living microbial colonies

Nuno Bandeira, Bradley S Moore, Theodore Alexandrov, 2012, Proceedings of the National Academy of Sciences.

Serial 3D imaging mass spectrometry at its tipping point.

Theodore Alexandrov, Andrew D. Palmer, T. Alexandrov, 2015, Analytical chemistry.

MALDI-imaging segmentation is a powerful tool for spatial functional proteomic analysis of human larynx carcinoma

Orlando Guntinas-Lichius, Michael Becker, Theodore Alexandrov, 2012, Journal of Cancer Research and Clinical Oncology.

Progression from cirrhosis to cancer is associated with early ubiquitin post‐translational modifications: identification of new biomarkers of cirrhosis at risk of malignancy

Theodore Alexandrov, Thibaut Léger, Denis Mestivier, 2014, The Journal of pathology.

Lifestyle chemistries from phones for individual profiling

Nuno Bandeira, Amnon Amir, Rob Knight, 2016, Proceedings of the National Academy of Sciences.

Does Latent Semantic Analysis Reflect Human Associations ?

Theodore Alexandrov, T. Alexandrov, 2008 .

Segmentation of confocal Raman microspectroscopic imaging data using edge-preserving denoising and clustering.

Theodore Alexandrov, Peter Lasch, P. Lasch, 2013, Analytical chemistry.

Proceedings of the ESSLLI Workshop on Distributional Lexical Semantics Bridging the gap between semantic theory and computational simulations

Kris Heylen, Theodore Alexandrov, 2008 .

Investigating the spatial distribution of growth anomalies affecting Montipora capitata corals in a 3-dimensional framework.

Ekaterina Ovchinnikova, Theodore Alexandrov, Ruth D Gates, 2016, Journal of Invertebrate Pathology.

Imaging mass spectrometry reveals modified forms of histone H4 as new biomarkers of microvascular invasion in hepatocellular carcinomas

Theodore Alexandrov, Nicolas Poté, Thibaut Léger, 2013, Hepatology.

Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae

Nuno Bandeira, Amnon Amir, Rob Knight, 2017, eLife.

FDR-controlled metabolite annotation for high-resolution imaging mass spectrometry

Michael Becker, Sergey Nikolenko, Theodore Alexandrov, 2016, Nature Methods.

Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen

Forest Rohwer, Pavel A. Pevzner, Pieter C. Dorrestein, 2016, mSystems.

Application of matrix-assisted laser desorption/ionization mass spectrometric imaging to monitor surface changes of UV-irradiated poly(styrene) films.

Ulrich S Schubert, Theodore Alexandrov, U. Schubert, 2011, Rapid communications in mass spectrometry : RCM.

Meta-mass shift chemical profiling of metabolomes from coral reefs

Pieter C. Dorrestein, Theodore Alexandrov, Daniel Petras, 2017, Proceedings of the National Academy of Sciences.

Compressed sensing in imaging mass spectrometry

Peter Maaß, Theodore Alexandrov, Dennis Trede, 2013 .

Benchmark datasets for 3 D MALDI-and DESI-imaging mass spectrometry

Franziska Hoffmann, Orlando Guntinas-Lichius, Michael Becker, 2015 .

Spatial single-cell profiling of intracellular metabolomes in situ

Theodore Alexandrov, Prasad Phapale, Luca Rappez, 2019, bioRxiv.

MRI-compatible pipeline for three-dimensional MALDI imaging mass spectrometry using PAXgene fixation.

Stefan Heldmann, Michael Becker, Theodore Alexandrov, 2013, Journal of proteomics.

The evolving field of imaging mass spectrometry and its impact on future biological research.

Jeramie D Watrous, Theodore Alexandrov, Pieter C Dorrestein, 2011, Journal of mass spectrometry : JMS.

Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung.

Nuno Bandeira, Forest Rohwer, Rob Knight, 2017, Cell host & microbe.

A METHOD OF TREND EXTRACTION USING SINGULAR SPECTRUM ANALYSIS

Theodore Alexandrov, T. Alexandrov, 2008, 0804.3367.

Analysis and interpretation of imaging mass spectrometry data by clustering mass-to-charge images according to their spatial similarity.

Michael Becker, Sergey Nikolenko, Theodore Alexandrov, 2013, Analytical chemistry.

Exploring three-dimensional matrix-assisted laser desorption/ionization imaging mass spectrometry data: three-dimensional spatial segmentation of mouse kidney.

Stefan Heldmann, Michael Becker, Theodore Alexandrov, 2012, Analytical chemistry.

A pr 2 00 8 A Method of Trend Extraction Using Singular Spectrum Analysis

Theodore Alexandrov, 2009 .

AMASS: algorithm for MSI analysis by semi-supervised segmentation.

Vineet Bafna, Theodore Alexandrov, Maxence Wisztorski, 2011, Journal of proteome research.

Bioactivity-Based Molecular Networking for the Discovery of Drug Leads in Natural Product Bioassay-Guided Fractionation.

Mingxun Wang, Theodore Alexandrov, Pieter C Dorrestein, 2018, Journal of natural products.

Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats.

Nuno Bandeira, Rob Knight, Jelena Todoric, 2016, Analytical chemistry.

N-acyl Taurines and Acylcarnitines Cause an Imbalance in Insulin Synthesis and Secretion Provoking β Cell Dysfunction in Type 2 Diabetes.

Na Sun, Theodore Alexandrov, Jan Krumsiek, 2017, Cell metabolism.

Metabolic profiling directly from the Petri dish using nanospray desorption electrospray ionization imaging mass spectrometry.

Theodore Alexandrov, Pieter C Dorrestein, Brandi S. Heath, 2013, Analytical chemistry.

New analysis workflow for MALDI imaging mass spectrometry: application to the discovery and identification of potential markers of childhood absence epilepsy.

Theodore Alexandrov, Herbert Thiele, Régis Lavigne, 2012, Journal of proteome research.

Mathematical Methods for Imaging Mass Spectrometry

Theodore Alexandrov, Dennis Trede, Jan Hendrik Kobarg, 2011 .