Eiji Nakata

发表

Zinc-finger proteins for site-specific protein positioning on DNA-origami structures.

Eiji Nakata, Takashi Morii, Masayuki Endo, 2012, Angewandte Chemie.

Ultrasound-dependent cytoplasmic internalization of a peptide-sonosensitizer conjugate.

T. Ohtsuki, Atsushi Harada, Eiji Nakata, 2017, Bioorganic & medicinal chemistry.

Spatially Organized Enzymes Drive Cofactor-Coupled Cascade Reactions.

Eiji Nakata, Takashi Morii, Masayuki Saimura, 2016, Journal of the American Chemical Society.

Latent pH-responsive ratiometric fluorescent cluster based on self-assembled photoactivated SNARF derivatives

Yoshihiro Uto, Eiji Nakata, Takashi Morii, 2016, Science and technology of advanced materials.

A ribonucleopeptide module for effective conversion of an RNA aptamer to a fluorescent sensor.

T. Morii, Eiji Nakata, F. Liew, 2011, Bioorganic & medicinal chemistry.

Protein adaptors assemble functional proteins on DNA scaffolds.

H. Dinh, T. Ngo, T. Morii, 2019, Chemical communications.

Ratiometric Fluorescent Biosensor for Real‐Time and Label‐Free Monitoring of Fine Saccharide Metabolic Pathways

Eiji Nakata, Itaru Hamachi, I. Hamachi, 2008, Chembiochem : a European journal of chemical biology.

Construction of ratiometric fluorescent sensors by ribonucleopeptides.

M. L. Gelmi, T. Morii, Eiji Nakata, 2012, Organic & biomolecular chemistry.

Construction of artificial signal transducers on a lectin surface by post-photoaffinity-labeling modification for fluorescent saccharide biosensors.

I. Hamachi, S. Shinkai, Eiji Nakata, 2003, Chemistry.

Coupling a natural receptor protein with an artificial receptor to afford a semisynthetic fluorescent biosensor.

I. Hamachi, S. Shinkai, Eiji Nakata, 2004, Journal of the American Chemical Society.

Double-modification of lectin using two distinct chemistries for fluorescent ratiometric sensing and imaging saccharides in test tube or in cell.

I. Hamachi, Y. Katayama, Eiji Nakata, 2005, Journal of the American Chemical Society.

Luminescent Saccharide Biosensor by Using Lanthanide‐Bound Lectin Labeled with Fluorescein

I. Hamachi, Eiji Nakata, Yoichiro Koshi, 2005, Chembiochem : a European journal of chemical biology.

One-pot and sequential organic chemistry on an enzyme surface to tether a fluorescent probe at the proximity of the active site with restoring enzyme activity.

I. Hamachi, Eiji Nakata, Yousuke Takaoka, 2006, Journal of the American Chemical Society.

A peptide nucleic acid (PNA) heteroduplex probe containing an inosine-cytosine base pair discriminates a single-nucleotide difference in RNA.

I. Saito, T. Morii, Eiji Nakata, 2013, Chemistry.

A Diversity‐Oriented Library of Fluorophore‐Modified Receptors Constructed from a Chemical Library of Synthetic Fluorophores

Young‐Tae Chang, T. Morii, Eiji Nakata, 2017, Chembiochem : a European journal of chemical biology.

Simultaneous detection of ATP and GTP by covalently linked fluorescent ribonucleopeptide sensors.

R. Sakaguchi, T. Morii, Eiji Nakata, 2013, Journal of the American Chemical Society.

Study of the triplet excited states and DFT calculations of iridium(III) complexes with mixed ligands

H. Takashima, Tsuyoshi Inoue, N. Yoshikawa, 2018, Journal of Molecular Structure.

A modular zinc finger adaptor accelerates the covalent linkage of proteins at specific locations on DNA nanoscaffolds.

H. Dinh, Masayuki Saimura, T. Ngo, 2015, Chemical communications.

Photoinduced electron‐transfer reactions of tris(2,2′‐bipyridine)ruthenium(II)‐based carbonic anhydrase inhibitors tethering plural binding sites

H. Takashima, Eiji Nakata, M. Suwa, 2018 .

A fluorescent lectin array using supramolecular hydrogel for simple detection and pattern profiling for various glycoconjugates.

I. Hamachi, Eiji Nakata, Hiroki Yamane, 2006, Journal of the American Chemical Society.

Development of New Methods to Introduce Unnatural Functional Molecules into Native Proteins for Protein Engineering

I. Hamachi, S. Tsukiji, Eiji Nakata, 2007 .

Photophysical and elecron-transfer reaction properties of tris(2,2’-bipyridine)ruthenium(II)-based inhibitors that covalently bound to the active site of chymotrypsin

H. Takashima, H. Kimura, Eiji Nakata, 2021 .

Target-specific chemical acylation of lectins by ligand-tethered DMAP catalysts.

I. Hamachi, S. Tsukiji, Eiji Nakata, 2008, Journal of the American Chemical Society.

Formation and regulation of fullerene-incorporation in liposomes under the phase transition temperature.

J. Kikuchi, Y. Uto, H. Hori, 2011, Organic & biomolecular chemistry.

DNA Origami Scaffolds as Templates for Functional Tetrameric Kir3 K+ Channels.

Y. Mori, H. Sugiyama, H. Dinh, 2018, Angewandte Chemie.

Zinc-finger proteins for site-specific protein positioning on DNA-origami structures.

Y. Mori, H. Sugiyama, Masayuki Endo, 2012, Angewandte Chemie.

Mechanistic Aspects for the Modulation of Enzyme Reactions on the DNA Scaffold

Peng Lin, Hui Yang, T. Morii, 2022, Molecules.

Octahedrons of 1,10-phenanthroline and 4′-chloro-2,2′:6′,2′'-terpyridine induced by protonation of nitrogen atoms: synthesis and analysis

H. Takashima, N. Yoshikawa, N. Tohnai, 2022, Journal of Molecular Structure.

Stimuli-Responsible SNARF Derivatives as a Latent Ratiometric Fluorescent Probe

T. Morii, Eiji Nakata, Khongorzul Gerelbaatar, 2022, Molecules.

Circularly polarised luminescence from excimer emission of anthracene derivatives complexed with γ-cyclodextrin in the solid state

H. Takashima, N. Tohnai, Eiji Nakata, 2023, RSC advances.

TX-2152: a conformationally rigid and electron-rich diyne analogue of FTY720 with in vivo antiangiogenic activity.

H. Nagasawa, Y. Asakawa, Y. Uto, 2008, Bioorganic & medicinal chemistry.

Structures, Atomic Charges, Emission Properties and DFT studies of Biquinoline Derivatives Induced by Protonation of a Nitrogen Atom

H. Takashima, N. Yoshikawa, N. Tohnai, 2021, Journal of Molecular Structure.

Emission properties of 1,10-phenanthroline derivatives induced by protonation of a nitrogen atom

H. Takashima, N. Yoshikawa, N. Tohnai, 2021 .

Anion Influence of Emission Properties and DFT Calculations of Diprotonated and Triprotonated Terpyridines

H. Takashima, N. Yoshikawa, Eiji Nakata, 2019 .

Syntheses, X-Ray Crystal Structures, Emission Properties and DFT Calculations of Monoprotonated Polypyridines

H. Takashima, Tsuyoshi Inoue, N. Yoshikawa, 2019, ChemistrySelect.

Design, synthesis, and radiosensitizing activities of sugar-hybrid hypoxic cell radiosensitizers.

H. Nagasawa, Y. Uto, H. Hori, 2008, Bioorganic & medicinal chemistry.

Chiral recognition of amino acid derivatives by 1,1′-binaphthalene-8,8′-diol

T. Kawabata, K. Fuji, K. Takasu, 1996 .

Circularly polarized luminescence (CPL) characteristics of hydrophobic pyrene derivatives/γ-cyclodextrin (γ-CD) complexes in aqueous solution dissolved by grinding

H. Takashima, N. Tohnai, Eiji Nakata, 2021, Journal of Inclusion Phenomena and Macrocyclic Chemistry.

Semisynthetic fluorescent sensor proteins based on self-labeling protein tags.

K. Tan, K. Johnsson, Eiji Nakata, 2009, Journal of the American Chemical Society.

Ratiometric fluorescence detection of a tag fused protein using the dual-emission artificial molecular probe.

A. Ojida, I. Hamachi, Eiji Nakata, 2006, Chemical communications.

Design of antiangiogenic hypoxic cell radiosensitizers: 2-nitroimidazoles containing a 2-aminomethylene-4-cyclopentene-1,3-dione moiety.

Y. Uehara, H. Nagasawa, Y. Uto, 2008, Bioorganic & medicinal chemistry.

Design of novel hypoxia-targeting IDO hybrid inhibitors conjugated with an unsubstituted L-TRP as an IDO affinity moiety.

H. Sugimoto, H. Nagasawa, Y. Uto, 2010, Advances in experimental medicine and biology.

Synthesis and biological activity of 1-methyl-tryptophan-tirapazamine hybrids as hypoxia-targeting indoleamine 2,3-dioxygenase inhibitors.

H. Sugimoto, H. Nagasawa, Y. Asakawa, 2008, Bioorganic & medicinal chemistry.

Stabilization and structural changes of 2D DNA origami by enzymatic ligation

A. Rajendran, T. Morii, Eiji Nakata, 2021, Nucleic acids research.

Effect of the Gc-derived macrophage-activating factor precursor (preGcMAF) on phagocytic activation of mouse peritoneal macrophages.

H. Terada, Y. Uto, H. Hori, 2011, Anticancer research.

Design of a bioreductively-activated fluorescent pH probe for tumor hypoxia imaging.

Y. Uto, H. Hori, Eiji Nakata, 2009, Bioorganic & medicinal chemistry.

Evaluation of the in vivo radiosensitizing activity of etanidazole using tumor-bearing chick embryo.

Y. Uto, H. Hori, Y. Endo, 2011, Journal of radiation research.

Material Analysis Laboratory in KU-FEL, Kyoto University

T. Sagawa, T. Sonobe, T. Sakka, 2011 .

Construction of dopamine sensors by using fluorescent ribonucleopeptide complexes.

T. Morii, Eiji Nakata, F. Liew, 2011, Bioorganic & medicinal chemistry.

Augmentation of an Engineered Bacterial Strain Potentially Improves the Cleanup of PCB Water Pollution

T. Morii, Eiji Nakata, Tomijiro Hara, 2021, Microbiology spectrum.

The molecular mechanism of photochemical internalization of cell penetrating peptide-cargo-photosensitizer conjugates

T. Ohtsuki, T. Haraguchi, S. Okazaki, 2015, Scientific Reports.

A chemical biosynthesis design for an antiatherosclerosis drug by acyclic tocopherol intermediate analogue based on "isoprenomics".

H. Nagasawa, D. Koyama, Y. Uto, 2009, Advances in experimental medicine and biology.

Covalent Bond Formation by Modular Adaptors to Locate Multiple Enzymes on a DNA Scaffold

A. Rajendran, T. Morii, Eiji Nakata, 2019, Kinetic Control in Synthesis and Self-Assembly.

DNA binding adaptors to assemble proteins of interest on DNA scaffold.

H. Dinh, T. Morii, Eiji Nakata, 2019, Methods in enzymology.

A protein adaptor to locate a functional protein dimer on molecular switchboard.

Masayuki Saimura, T. Kodaki, T. Ngo, 2014, Methods.

Medicinal electronomics bricolage design of hypoxia-targeting antineoplastic drugs and invention of boron tracedrugs as innovative future-architectural drugs.

Y. Uto, H. Hori, Eiji Nakata, 2010, Anticancer research.

Topologically-Interlocked Minicircles as Probes of DNA Topology and DNA-Protein Interactions.

A. Rajendran, T. Morii, Eiji Nakata, 2022, Chemistry.

Boron tracedrugs challenge for neutron dynamic therapy.

Y. Uto, H. Hori, Eiji Nakata, 2012, Anticancer research.

Facile conversion of RNA aptamers to modular fluorescent sensors with tunable detection wavelengths.

T. Morii, Eiji Nakata, S. Nakano, 2011, Bioorganic & medicinal chemistry letters.

Recent Progress in Strategies for the Creation of Protein‐Based Fluorescent Biosensors

I. Hamachi, Eiji Nakata, Hangxiang Wang, 2009, Chembiochem : a European journal of chemical biology.

A novel strategy to design latent ratiometric fluorescent pH probes based on self-assembled SNARF derivatives

Y. Uto, H. Hori, T. Morii, 2014 .

Fluorescence detection of the nitric oxide-induced structural change at the putative nitric oxide sensing segment of TRPC5.

Y. Mori, R. Sakaguchi, Masayuki Saimura, 2020, Bioorganic & medicinal chemistry.

Nucleic‐Acid‐Templated Enzyme Cascades

A. Rajendran, T. Morii, Eiji Nakata, 2017, Chembiochem : a European journal of chemical biology.

Selective cross-linking of interacting proteins using self-labeling tags.

Arnaud Gautier, K. Tan, K. Johnsson, 2009, Journal of the American Chemical Society.

Positional effects of phosphorylation on the stability and morphology of tau-related amyloid fibrils.

Kazuki Tainaka, T. Konno, T. Morii, 2012, Biochemistry.

Influence of polymer molecular weight on the properties of in situ synthesized silver–methylcellulose nanocomposite films with a CO2 laser

T. Nakajima, T. Morii, Eiji Nakata, 2019, Journal of Materials Science.

Dynamic Assembly of Cascade Enzymes by the Shape Transformation of a DNA Scaffold

H. Dinh, Peng Lin, T. Morii, 2023, Advanced Functional Materials.

Dynamic Shape Transformation of a DNA Scaffold Applied for an Enzyme Nanocarrier

H. Dinh, Peng Lin, T. Morii, 2021, Frontiers in Chemistry.

Tuning the reactivity of substrate for SNAP-tag expands its application for recognition-driven DNA-protein conjugation.

H. Dinh, A. Rajendran, Masayuki Saimura, 2021, Chemistry.

Design of Modular Protein Tags for Orthogonal Covalent Bond Formation at Specific DNA Sequences.

H. Dinh, Masayuki Saimura, T. Morii, 2017, Journal of the American Chemical Society.

Controlled Assembly of Fluorophores inside a Nanoliposome

T. Morii, Eiji Nakata, Futa Komatsubara, 2023, Molecules.

Construction of a library of structurally diverse ribonucleopeptides with catalytic groups.

T. Morii, Eiji Nakata, S. Nakano, 2017, Bioorganic & medicinal chemistry.

Design of a SNARF-based Ratiometric Fluorescent Probe for Esterase

Y. Uto, H. Hori, Eiji Nakata, 2010 .

Conditional dependence of enzyme cascade reaction efficiency on the inter-enzyme distance.

H. Dinh, Peng Lin, T. Morii, 2021, Chemical communications.

A facile combinatorial approach to construct a ratiometric fluorescent sensor: application for the real-time sensing of cellular pH changes†

S. Futaki, T. Morii, Eiji Nakata, 2021, Chemical science.

Recent progress in the construction methodology of fluorescent biosensors based on biomolecules

Eiji Nakata, Takashi Morii, Shun Nakano, 2011 .

Phosphorylation regulates fibrillation of an aggregation core peptide in the second repeat of microtubule-binding domain of human tau.

T. Konno, T. Morii, Eiji Nakata, 2014, Bioorganic & medicinal chemistry.

Design of a hybrid biosensor for enhanced phosphopeptide recognition based on a phosphoprotein binding domain coupled with a fluorescent chemosensor.

A. Ojida, I. Hamachi, Eiji Nakata, 2007, Journal of the American Chemical Society.

Recent Progress in Strategies for the Creation of Protein-Based Fluorescent Biosensors

I. Hamachi, Eiji Nakata, Hangxiang Wang, 2010 .

A newly designed cell-permeable SNARF derivative as an effective intracellular pH indicator.

Y. Uto, H. Hori, Eiji Nakata, 2010, Chemical communications.

Self-Assembled Fluorescent Nanoprobe for the Detection of Fluoride Ions in Aqueous Solutions

Y. Uto, H. Hori, T. Morii, 2015 .

Development of an in vivo Evaluation System of Antioxidants for their Vascular Protective Activities using the Chick Embryonic Chorioallantoic Membrane

Y. Uto, H. Hori, Eiji Nakata, 2009 .

Reaction of ribulose biphosphate carboxylase/oxygenase assembled on a DNA scaffold.

H. Dinh, Peng Lin, Masayuki Saimura, 2019, Bioorganic & medicinal chemistry.

Prenylated acylphloroglucinol derivatives: isoprenomics-based design, syntheses and antioxidative activities.

Y. Uto, H. Hori, K. Yazaki, 2012, Advances in experimental medicine and biology.

Lectin Functionalization by Post-Photo Affinity Labeling Modification (P-PALM)

I. Hamachi, Eiji Nakata, Yoichiro Koshi, 2007 .

135 Arranging enzymes and receptors with nanometer-scale precision on molecular switchboards

T. Morii, Eiji Nakata, Ngo Anh Tien, 2013 .

Nanometer Accuracy in Cryogenic Far-Field Localization Microscopy of Individual Molecules.

Keita Ishida, S. Fujiyoshi, H. Kashida, 2019, The journal of physical chemistry letters.

Cryogenic Far-Field Fluorescence Nanoscopy: Evaluation with DNA Origami.

Keita Ishida, S. Fujiyoshi, T. Morii, 2020, The journal of physical chemistry. B.

Macropinoscope: Real-Time Simultaneous Tracking of pH and Cathepsin B Activity in Individual Macropinosomes.

S. Futaki, T. Morii, Eiji Nakata, 2023, Analytical chemistry.

FRET‐Based Cathepsin Probes for Simultaneous Detection of Cathepsin B and D Activities

T. Morii, Eiji Nakata, Zhengxiao Zhang, 2022, Chembiochem : a European journal of chemical biology.

Design, synthesis and destructive dynamic effects of BODIPY-containing and curcuminoid boron tracedrugs for neutron dynamic therapy.

K. Ono, Y. Sakurai, Y. Uto, 2011, Anticancer research.

TX-2152: a conformationally rigid and electron-rich diyne analogue of FTY720 with in vivo antiangiogenic activity.

H. Nagasawa, Y. Asakawa, Y. Uto, 2008, Bioorganic & medicinal chemistry.

A neutron dynamic therapy with a boron tracedrug UTX-51 using a compact neutron generator.

Y. Uto, H. Hori, T. Morii, 2014, Anticancer research.

Synthesis and photophysical properties of new SNARF derivatives as dual emission pH sensors.

Y. Uto, H. Hori, Eiji Nakata, 2011, Bioorganic & medicinal chemistry letters.

A Ratiometric Fluorescent Probe for pH Measurement over a Wide Range Composed of Three Types of Fluorophores Assembled on a DNA Scaffold

Peng Lin, T. Morii, Eiji Nakata, 2023, Chemistry.

Enhanced enzymatic activity exerted by a packed assembly of a single type of enzyme

H. Dinh, M. Kinoshita, Masayuki Saimura, 2020, Chemical science.

Rational design of a DNA sequence-specific modular protein tag by tuning the alkylation kinetics

Eiji Nakata, T. M. Nguyen, Zhengxiao Zhang, 2019, Chemical science.

Near Quantitative Ligation Results in Resistance of DNA Origami Against Nuclease and Cell Lysate

Eiji Nakata, K. Krishnamurthy, Takashi Morii, 2023, Small methods.

Selective cross-linking of interacting proteins using self-labeling tags.

Arnaud Gautier, K. Johnsson, G. Lukinavičius, 2009, Journal of the American Chemical Society.