A. Lebrand

Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform.

I. Xenarios, J. Schrenzel, V. Lazarevic, 2018, Swiss medical weekly.

Clinical bioinformatics for microbial genomics and metagenomics: an ESCMID Postgraduate Technical Workshop.

Gilbert GREUB, P. Palagi, J. Rossen, 2020, Microbes and infection.

SARS-CoV-2 in schools: genome analysis shows that concurrent cases in the second and third wave were often unconnected

U. Heininger, J. Bielicki, S. Fuchs, 2022, medRxiv.

Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples

J. Breuer, S. van Boheemen, I. Sidorov, 2021, medRxiv.

Viral Metagenomics in the Clinical Realm: Lessons Learned from a Swiss-Wide Ring Trial

Jacques Fellay, Michael Huber, Valérie Barbié, 2019, Genes.

SARS-CoV-2 Vaccine Alpha and Delta Variant Breakthrough Infections Are Rare and Mild but Can Happen Relatively Early after Vaccination

M. Battegay, R. Bingisser, T. Stadler, 2021, medRxiv.

NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test

J. Schrenzel, L. Falquet, A. Kahles, 2020, Frontiers in Microbiology.

Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II: bioinformatic analysis and reporting.

P. Simmonds, M. Beer, E. Puchhammer-Stöckl, 2021, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform.

I. Xenarios, J. Schrenzel, V. Lazarevic, 2018, Swiss medical weekly.