Mamoru Sato

发表

Identification of Small Molecule Proliferating Cell Nuclear Antigen (PCNA) Inhibitor That Disrupts Interactions with PIP-box Proteins and Inhibits DNA Replication*

R. Heath, H. Hashimoto, A. Inoue, 2012, The Journal of Biological Chemistry.

Dynamics of proteins with different molecular structures under solution condition

T. Saio, M. Sugiyama, R. Inoue, 2020, Scientific Reports.

The Crystal Structure of the Novel Calcium-binding Protein AtCBL2 from Arabidopsis thaliana*

Mamoru Sato, Akira Nozawa, Hiroshi Sano, 2003, Journal of Biological Chemistry.

Crystal structure of basic 7S globulin, a xyloglucan‐specific endo‐β‐1,4‐glucanase inhibitor protein‐like protein from soybean lacking inhibitory activity against endo‐β‐glucanase

H. Hirano, Toshiyuki Shimizu, H. Hashimoto, 2011, The FEBS journal.

Plasmid partitioning protein TubR from Bacillus cereus

S. Fuchigami, Mamoru Sato, I. Hayashi, 2018 .

Extended string-like binding of the phosphorylated HP1α N-terminal tail to the lysine 9-methylated histone H3 tail

A. Kidera, K. Moritsugu, Y. Nishimura, 2016, Scientific Reports.

Mechanistic insights into the activation of Rad51-mediated strand exchange from the structure of a recombination activator, the Swi5-Sfr1 complex.

M. Ikeguchi, Toshiyuki Shimizu, Y. Tsutsui, 2012, Structure.

Towards the Structural Characterization of Intrinsically Disordered Proteins by SAXS and MD Simulation

M. Ikeguchi, T. Oroguchi, Mamoru Sato, 2011 .

Structure and Functional Characterization of Vibrio parahaemolyticus Thermostable Direct Hemolysin*

T. Ikegami, T. Yamane, M. Ikeguchi, 2010, The Journal of Biological Chemistry.

Investigation of molecular size of transcription factor TFIIE in solution

S. Akashi, Y. Nishimura, S. Unzai, 2005, Proteins.

Structural Characterization of Calcineurin B Homologous Protein 1*

Y. Naoe, Toshiyuki Shimizu, H. Hashimoto, 2005, Journal of Biological Chemistry.

Crystallization and preliminary X-ray crystallographic studies of transportin 1 in complex with nucleocytoplasmic shuttling and nuclear localization fragments.

Toshiyuki Shimizu, H. Hashimoto, M. Yamada, 2006, Acta crystallographica. Section F, Structural biology and crystallization communications.

Stopped-Flow Small-Angle X-Ray Scattering Study on the Acid-Denaturation of Taka-Amylase A

N. Kasai, Mitsunori Kato, Y. Hata, 1986 .

Small-angle X-ray scattering study of cytochrome oxidase from beef heart and its complex with cytochrome c using contrast variation method

Y. Katsube, N. Tanaka, T. Ozawa, 1991 .

Structure of the UHRF 1 Ta ndem Tudor Domain Bound to a Methylated Non-histone Protein , LIG 1 , Reveals Rules for Binding and Regulation Graphical Abstract Highlights

P. Defossez, Laure Ferry, T. Ando, 2022 .

Crystallization and X-ray diffraction analysis of the ternary complex of the C-terminal domain of human REV1 in complex with REV7 bound to a REV3 fragment involved in translesion DNA synthesis.

Toshiyuki Shimizu, H. Hashimoto, Mamoru Sato, 2012, Acta crystallographica. Section F, Structural biology and crystallization communications.

Purification, crystallization and initial X-ray diffraction study of human REV7 in complex with a REV3 fragment

Hashimoto, S. Akashi, Toshiyuki Shimizu, 2009 .

Structural and biochemical analyses of the human PAD4 variant encoded by a functional haplotype gene.

H. Kurumizaka, A. Osakabe, S. Akashi, 2011, Acta crystallographica. Section D, Biological crystallography.

Crystallization and preliminary X-ray crystallographic analysis of human peptidylarginine deiminase V.

Toshiyuki Shimizu, H. Hashimoto, M. Yamada, 2003, Acta Crystallographica Section D: Biological Crystallography.

Purification, crystallization and X-ray diffraction study of extracellular dermal glycoprotein from carrot and the inhibition complex that it forms with an endo-β-glucanase from Aspergillus aculeatus.

H. Hirano, Toshiyuki Shimizu, H. Hashimoto, 2011, Acta crystallographica. Section F, Structural biology and crystallization communications.

A structure-based model of substrate discrimination by a noncanonical PDZ tandem in the intramembrane-cleaving protease RseP.

J. Takagi, T. Nogi, Mamoru Sato, 2014, Structure.

Structural analysis of the STAT1:STAT2 heterodimer revealed the mechanism of Sendai virus C protein–mediated blockade of type 1 interferon signaling

Y. Matoba, T. Irie, T. Sakaguchi, 2017, The Journal of Biological Chemistry.

Structure of the HLTF HIRAN domain and its functional implications in regression of a stalled replication fork.

H. Hashimoto, A. Hishiki, Mamoru Sato, 2020, Acta crystallographica. Section D, Structural biology.

The α1β1 Heterodimer and Molecular Assembly of ATP synthase

T. Hamamoto, Y. Kagawa, S. Ohta, 1991 .

Crystallographic characterization of the N-terminal domain of a plant NADPH oxidase.

K. Shimamoto, Toshiyuki Shimizu, C. Kojima, 2008, Acta crystallographica. Section F, Structural biology and crystallization communications.

Crystallographic study of G178S mutant of human proliferating cell nuclear antigen.

Toshiyuki Shimizu, H. Hashimoto, H. Ohmori, 2008, Acta crystallographica. Section F, Structural biology and crystallization communications.

Crystallization and preliminary X-ray crystallographic analysis of rat calcineurin B homologous protein 1.

Y. Naoe, Toshiyuki Shimizu, H. Hashimoto, 2005, Acta crystallographica. Section F, Structural biology and crystallization communications.

Crystallization and preliminary X-ray characterization of a novel calcium-binding protein AtCBL2 from Arabidopsis thaliana.

Toshiyuki Shimizu, H. Hashimoto, H. Sano, 2003, Acta crystallographica. Section D, Biological crystallography.

Crystallographic study of endogenous α-amylase inhibitor from wheat

H. Matsubara, Y. Hata, Y. Katsube, 1987 .

Molecular level analyses of mechanical properties of PTFE sterilized by Co-60 γ-ray irradiation for clinical use

Aira Matsugaki, T. Nakano, M. Okazaki, 2017 .

Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1

M. Shirakawa, H. Tochio, K. Kuwata, 2012, Proceedings of the National Academy of Sciences.

Initial crystallographic study of human PCNA in complex with a peptide containing the noncanonical PIP-box sequence of human DNA polymerase iota.

Toshiyuki Shimizu, H. Hashimoto, H. Ohmori, 2008, Acta crystallographica. Section F, Structural biology and crystallization communications.

Three-Dimensional Structure of Soybean β-Amylase Determined at 3.0 Å Resolution: Preliminary Chain Tracing of the Complex with α-Cyclodextrin

Mamoru Sato, B. Mikami, Y. Katsube, 1992 .

Purification, crystallization and initial X-ray diffraction study of the zinc-finger domain of zebrafish Nanos.

Toshiyuki Shimizu, H. Hashimoto, Keishi Nakamura, 2009, Acta crystallographica. Section F, Structural biology and crystallization communications.

Structural and dynamics analysis of intrinsically disordered proteins by high-speed atomic force microscopy

Tetsuya Mori, T. Ando, N. Kodera, 2020, Nature Nanotechnology.

Fission Yeast Swi5-Sfr1 Protein Complex, an Activator of Rad51 Recombinase, Forms an Extremely Elongated Dogleg-shaped Structure

M. Ikeguchi, S. Akashi, Toshiyuki Shimizu, 2011, The Journal of Biological Chemistry.

Structure of the UHRF1 Tandem Tudor Domain Bound to a Methylated Non-histone Protein, LIG1, Reveals Rules for Binding and Regulation.

Mamoru Sato, Toshio Ando, Yoichi Shinkai, 2019, Structure.

Calcium sensing via EF-hand 4 enables thioredoxin activity in the sensor-responder protein calredoxin in the green alga Chlamydomonas reinhardtii

T. Ikegami, M. Hippler, M. Scholz, 2019, The Journal of Biological Chemistry.

Molecular Basis for SMC Rod Formation and Its Dissolution upon DNA Binding

Nam Ki Lee, B. Oh, C. Toseland, 2015, Molecular cell.

Intrinsic dynamics of restriction endonuclease EcoO109I studied by molecular dynamics simulations and X-ray scattering data analysis.

Mamoru Sato, Mitsunori Ikeguchi, Tomotaka Oroguchi, 2009, Biophysical journal.

Cooperative DNA Binding of the Plasmid Partitioning Protein TubR from the Bacillus cereus pXO1 Plasmid.

S. Fuchigami, Mamoru Sato, I. Hayashi, 2018, Journal of molecular biology.

Structural insights into a 20.8-kDa tegumental-allergen-like (TAL) protein from Clonorchis sinensis

Sam-Yong Park, K. Hwang, S. Unzai, 2017, Scientific Reports.

Structure of the N-terminal Regulatory Domain of a Plant NADPH Oxidase and Its Functional Implications*

K. Shimamoto, S. Akashi, Toshiyuki Shimizu, 2009, The Journal of Biological Chemistry.

Structure of a Novel DNA-binding Domain of Helicase-like Transcription Factor (HLTF) and Its Functional Implication in DNA Damage Tolerance*

Toshiyuki Shimizu, H. Hashimoto, H. Yokoyama, 2015, The Journal of Biological Chemistry.

Structural Basis for Matrix Metalloproteinase-2 (MMP-2)-selective Inhibitory Action of β-Amyloid Precursor Protein-derived Inhibitor*

H. Hashimoto, K. Miyazaki, Mamoru Sato, 2011, The Journal of Biological Chemistry.

A novel 3′ splice site recognition by the two zinc fingers in the U2AF small subunit

E. Obayashi, H. Yoshida, Sam-Yong Park, 2015, Genes & development.

Structural basis of recruitment of DNA polymerase ζ by interaction between REV1 and REV7 proteins.

Toshiyuki Shimizu, H. Hashimoto, Mamoru Sato, 2012, The Journal of biological chemistry.

Structural basis for inhibition of xyloglucan-specific endo-β-1,4-glucanase (XEG) by XEG-protein inhibitor.

H. Hirano, Toshiyuki Shimizu, H. Hashimoto, 2012, The Journal of biological chemistry.

Structural basis for Ca2+-induced activation of human PAD4

Toshiyuki Shimizu, H. Hashimoto, M. Yamada, 2004, Nature Structural &Molecular Biology.

Crystal Structure of Human REV7 in Complex with a Human REV3 Fragment and Structural Implication of the Interaction between DNA Polymerase ζ and REV1*

Y. Murakumo, S. Akashi, Toshiyuki Shimizu, 2010, The Journal of Biological Chemistry.

Structural analysis of the hexasome, lacking one histone H2A/H2B dimer from the conventional nucleosome.

H. Kurumizaka, Y. Arimura, H. Tachiwana, 2012, Biochemistry.

Charge‐neutralization effect of the tail regions on the histone H2A/H2B dimer structure

H. Kurumizaka, S. Akashi, Y. Nishimura, 2015, Protein science : a publication of the Protein Society.

The crystal structure of plant-specific calcium-binding protein AtCBL2 in complex with the regulatory domain of AtCIPK14.

Toshiyuki Shimizu, H. Hashimoto, N. Koizumi, 2008, Journal of molecular biology.

Characterisation of an intrinsically disordered protein complex of Swi5-Sfr1 by ion mobility mass spectrometry and small-angle X-ray scattering.

Mamoru Sato, Mitsunori Ikeguchi, Naoyuki Kuwabara, 2013, The Analyst.

Crystal structure of the human centromeric nucleosome containing CENP-A

Hiroshi Kimura, Mamoru Sato, Kengo Saito, 2011, Nature.

The development of N-α-(2-carboxyl)benzoyl-N(5)-(2-fluoro-1-iminoethyl)-l-ornithine amide (o-F-amidine) and N-α-(2-carboxyl)benzoyl-N(5)-(2-chloro-1-iminoethyl)-l-ornithine amide (o-Cl-amidine) as second generation protein arginine deiminase (PAD) inhibitors.

Yuan Luo, A. Chumanevich, L. Hofseth, 2011, Journal of medicinal chemistry.

Structural basis of a nucleosome containing histone H2A.B/H2A.Bbd that transiently associates with reorganized chromatin

H. Kimura, H. Kurumizaka, A. Osakabe, 2013, Scientific Reports.

Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB.

Jill Trewhella, Wayne A Hendrickson, Gerard J Kleywegt, 2013, Structure.

Inhibitors and inactivators of protein arginine deiminase 4: functional and structural characterization.

Yuan Luo, M. Stallcup, P. Thompson, 2006, Biochemistry.

Structural basis for histone N-terminal recognition by human peptidylarginine deiminase 4.

Toshiyuki Shimizu, H. Hashimoto, M. Yamada, 2006, Proceedings of the National Academy of Sciences of the United States of America.

Structure of HIRAN domain of human HLTF bound to duplex DNA provides structural basis for DNA unwinding to initiate replication fork regression.

H. Hashimoto, A. Hishiki, Mamoru Sato, 2020, Journal of biochemistry.

Crystal structure of Cex1p reveals the mechanism of tRNA trafficking between nucleus and cytoplasm

O. Nureki, R. Ishitani, H. Becker, 2013, Nucleic acids research.

Crystal structure of Cex 1 p reveals the mechanism of tRNA trafficking between nucleus and cytoplasm

O. Nureki, R. Ishitani, H. Becker, 2013 .

Structural basis for substrate recognition and dissociation by human transportin 1.

N. Imamoto, Toshiyuki Shimizu, H. Hashimoto, 2007, Molecular cell.

Expression, purification and crystallization of Swi5 and the Swi5-Sfr1 complex from fission yeast.

M. Ikeguchi, Toshiyuki Shimizu, H. Hashimoto, 2010, Acta crystallographica. Section F, Structural biology and crystallization communications.

Intramolecular Cycloaddition of Two Acyl-1,4-benzoquinone Moieties on Photolysis

K. Maruyama, Mamoru Sato, N. Tanaka, 1984 .

Crystal Structure at 1.5-Å Resolution of Pyrus pyrifolia Pistil Ribonuclease Responsible for Gametophytic Self-incompatibility*

H. Sakai, Mamoru Sato, S. Norioka, 2001, The Journal of Biological Chemistry.

The αβ complexes of ATP synthase: the α3β3 oligomer and α1β1 protomer

Y. Kagawa, S. Ohta, H. Kihara, 1992 .

The α3β3 and α1β1 Complexes of ATP Synthase

Y. Kagawa, S. Ohta, Mamoru Sato, 1992 .

Structural Basis for Novel Interactions between Human Translesion Synthesis Polymerases and Proliferating Cell Nuclear Antigen*

Toshiyuki Shimizu, H. Hashimoto, H. Ohmori, 2009, Journal of Biological Chemistry.

Crystal structure of zinc‐finger domain of Nanos and its functional implications

Toshiyuki Shimizu, H. Hashimoto, S. Unzai, 2010, EMBO reports.

Crystallization and preliminary X-ray crystallographic analyses of EcoO109I and its complex with DNA.

Toshiyuki Shimizu, H. Hashimoto, Mamoru Sato, 2004, Acta crystallographica. Section D, Biological crystallography.

Distinct features of the histone core structure in nucleosomes containing the histone H2A.B variant.

H. Kurumizaka, Y. Arimura, M. Sugiyama, 2014, Biophysical journal.

Protein Dynamics Investigated by Small-angle X-ray Scattering and Molecular Dynamics Simulations

M. Ikeguchi, Mamoru Sato, Tomotaka Oroguchi, 2013 .

C9orf72-derived arginine-rich poly-dipeptides impede phase modifiers

H. Taguchi, N. Kodera, Mari Nakanishi, 2021, Nature Communications.

Structural basis of autoinhibition and activation of the DNA-targeting ADP-ribosyltransferase pierisin-1

K. Wakabayashi, Toshiyuki Shimizu, H. Hashimoto, 2017, The Journal of Biological Chemistry.

Deimination stabilizes histone H2A/H2B dimers as revealed by electrospray ionization mass spectrometry.

H. Kurumizaka, S. Akashi, Y. Nishimura, 2010, Journal of mass spectrometry : JMS.

Crystal and molecular structure of 6-0-acetylgrayanotoxin III

Y. Katsube, Mamoru Sato, T. Tetsumi, 1996 .

Crystal and molecular structure of grayanotoxin VII

Mamoru Sato, Ken-ichi Sakaguchi, T. Tetsumi, 2000 .

Crystal and molecular structure of iso-grayanotoxin II

Mamoru Sato, Ken-ichi Sakaguchi, T. Tetsumi, 2000 .

Crystal and molecular structure of 647-1647-1647-13,6,14,16,20-pentaacetate

Y. Katsube, Mamoru Sato, T. Tetsumi, 1994 .

Crystal and Molecular Structure of (1R,6S)-3,6,14,16-Tetrahydroxyspiro[1,5]grayanotoxin-5-one

Y. Katsube, Mamoru Sato, T. Tetsumi, 1993 .

Crystal and Molecular Structure of 1,5-Seco-grayanotoxin-1,3,6,14,16-pentaacetate.

Y. Katsube, Mamoru Sato, T. Tetsumi, 1992 .

Crystal and molecular structure of 3,6-dioxograyanotoxin I

Y. Katsube, Mamoru Sato, T. Tetsumi, 1992 .

Crystal and molecular structure of asebotoxin IV

Y. Katsube, Mamoru Sato, T. Tetsumi, 1994 .

Crystal structure of human REV 7 in complex with a human REV 3 fragment and structural implication of the interaction between DNA polymerase ζ and REV 1

Y. Murakumo, S. Akashi, Toshiyuki Shimizu, 2010 .

Structural Basis for Novel Interactions Between Human Translesion Synthesis Polymerases and PCNA

Toshiyuki Shimizu, H. Hashimoto, H. Ohmori, 2008 .

The α1β1 heterodimer, the unit of ATP synthase

Y. Kagawa, S. Ohta, T. Ohta, 1991 .

Crystal structure of N-carbamyl-D-amino acid amidohydrolase with a novel catalytic framework common to amidohydrolases.

Y. Ikenaka, H. Nanba, S. Takahashi, 2000, Structure.

A novel heterotetrameric structure of the crenarchaeal PCNA2-PCNA3 complex.

H. Hashimoto, S. Miyamoto, M. Tsunoda, 2011, Journal of structural biology.

Transition of ovalbumin to thermostable structure entails conformational changes involving the reactive center loop.

K. Koga, T. Kusakabe, J. Kurisaki, 2007, Biochimica et Biophysica Acta.

Structural analysis of the hexasome, lacking one histone H2A/H2B dimer from the conventional nucleosome.

H. Kurumizaka, Y. Arimura, H. Tachiwana, 2012, Biochemistry.

Intrinsic dynamics of restriction endonuclease EcoO109I studied by molecular dynamics simulations and X-ray scattering data analysis.

M. Ikeguchi, Toshiyuki Shimizu, H. Hashimoto, 2009, Biophysical journal.

Crystal structure of H2-proteinase from the venom of Trimeresurus flavoviridis.

T. Kumasaka, Y. Katsube, N. Tanaka, 1996, Journal of biochemistry.

Analysis of the Fine-Tuning of Cyanobacterial Circadian Phase by Monochromatic Light and Long-Day Conditions.

Toshiyuki Shimizu, Yohko Kitayama, R. Kanaly, 2016, Plant & cell physiology.

A structure-based model of substrate discrimination by a noncanonical PDZ tandem in the intramembrane-cleaving protease RseP.

J. Takagi, T. Nogi, Mamoru Sato, 2014, Structure.

The 2.0-A resolution structure of soybean beta-amylase complexed with alpha-cyclodextrin.

J. Sacchettini, B. Mikami, E. Hehre, 1993, Biochemistry.

Structural and Biochemical Characterization of a Cyanobacterium Circadian Clock-modifier Protein*

Mamoru Sato, Toshiyuki Shimizu, Toshiyuki Shimizu, 2007, Journal of Biological Chemistry.