James I. Mullins

发表

Changes in Human Immunodeficiency Virus Type 1 Fitness and Genetic Diversity during Disease Progression

Eric J. Arts, Mark A. Jensen, M. Jensen, 2005, Journal of Virology.

A Reliable Phenotype Predictor for Human Immunodeficiency Virus Type 1 Subtype C Based on Envelope V3 Sequences

Lynn Morris, Mia Coetzer, Mark A. Jensen, 2006, Journal of Virology.

Evidence that Low-Level Viremias during Effective Highly Active Antiretroviral Therapy Result from Two Processes: Expression of Archival Virus and Replication of Virus

Yang Wang, Gerald H. Learn, Sarah E. Holte, 2005, Journal of Virology.

Amino-Acid Co-Variation in HIV-1 Gag Subtype C: HLA-Mediated Selection Pressure and Compensatory Dynamics

Philip J. R. Goulder, David E. Heckerman, Christian Brander, 2010, PloS one.

Monotypic Human Immunodeficiency Virus Type 1 Genotypes across the Uterine Cervix and in Blood Suggest Proliferation of Cells with Provirus

Robert W. Coombs, Gerald H. Learn, Lisa M. Frenkel, 2009, Journal of Virology.

Selection on the Human Immunodeficiency Virus Type 1 Proteome following Primary Infection

David C. Nickle, Lawrence Corey, Jianhong Cao, 2006, Journal of Virology.

Substitution Model of Sequence Evolution for the Human Immunodeficiency Virus Type 1 Subtype B gp120 Gene over the C2-V5 Region

Yang Wang, Allen G. Rodrigo, Gerald H. Learn, 2001, Journal of Molecular Evolution.

Estimating the Impact of Plasma HIV-1 RNA Reductions on Heterosexual HIV-1 Transmission Risk

James P. Hughes, Connie Celum, Helen Rees, 2010, PloS one.

Variable Fitness Impact of HIV-1 Escape Mutations to Cytotoxic T Lymphocyte (CTL) Response

Eric J. Arts, Yi Liu, J. Mullins, 2009, PLoS pathogens.

Virus Population Homogenization following Acute Human Immunodeficiency Virus Type 1 Infection

Tuofu Zhu, Lawrence Corey, Gerald H. Learn, 2002, Journal of Virology.

Multiple Viral Genetic Analyses Detect Low-Level Human Immunodeficiency Virus Type 1 Replication during Effective Highly Active Antiretroviral Therapy

Yang Wang, Gerald H. Learn, Sarah E. Holte, 2003, Journal of Virology.

Association Study of Common Genetic Variants and HIV-1 Acquisition in 6,300 Infected Cases and 7,200 Controls

Paul J. McLaren, Jacques Fellay, David B. Goldstein, 2013, PLoS pathogens.

Genetic impact of vaccination on breakthrough HIV-1 sequences from the Step trial

Peter B. Gilbert, Ann Duerr, Lawrence Corey, 2011, Nature Medicine.

Compensatory Mutation Partially Restores Fitness and Delays Reversion of Escape Mutation within the Immunodominant HLA-B*5703-Restricted Gag Epitope in Chronic Human Immunodeficiency Virus Type 1 Infection

Philip J. R. Goulder, Christian Brander, Eric Hunter, 2007, Journal of Virology.

Fidelity of SNP Array Genotyping Using Epstein Barr Virus-Transformed B-Lymphocyte Cell Lines: Implications for Genome-Wide Association Studies

Joshua T. Herbeck, Geoffrey S. Gottlieb, Roger Detels, 2009, PloS one.

Mutation of HIV-1 Genomes in a Clinical Population Treated with the Mutagenic Nucleoside KP1461

James P. Hughes, Jean-Pierre Laurent, Jeffrey H. Simpson, 2011, PloS one.

HIV Sequence Compendium 2015

Andrew Rambaut, Brian T. Foley, Ilene Mizrachi, 2015 .

HIV-Specific Probabilistic Models of Protein Evolution

David C. Nickle, Peter B. Gilbert, Sergei L. Kosakovsky Pond, 2007, PloS one.

MRKAd5 HIV-1 Gag/Pol/Nef Vaccine-Induced T-Cell Responses Inadequately Predict Distance of Breakthrough HIV-1 Sequences to the Vaccine or Viral Load

Tomer Hertz, Julian Wolfson, Holly Janes, 2012, PloS one.

HIV-1 Superinfection in the Antiretroviral Therapy Era: Are Seroconcordant Sexual Partners at Risk?

David C. Nickle, Geoffrey S. Gottlieb, Wenjie Deng, 2009, PloS one.

Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection

Brendan B. Larsen, Lisa M. Frenkel, Paul T. Edlefsen, 2014, Science.

Broad and Gag-Biased HIV-1 Epitope Repertoires Are Associated with Lower Viral Loads

David Heckerman, Philip J. R. Goulder, Christian Brander, 2008, PloS one.

Testing the Hypothesis of a Recombinant Origin of Human Immunodeficiency Virus Type 1 Subtype E

Allen G. Rodrigo, Gerald H. Learn, Claire Delahunty, 2000, Journal of Virology.

HIV Sequence Compendium 2018

Andrew Rambaut, Brian T. Foley, Ilene Mizrachi, 2018 .

Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env-V2

Tomer Hertz, Peter D. Kwong, Hasan Ahmed, 2012, Nature.

Fitness Costs of Mutations at the HIV-1 Capsid Hexamerization Interface

Morgane Rolland, J. Mullins, James I. Mullins, 2013, PloS one.

Demographic Processes Affect HIV-1 Evolution in Primary Infection before the Onset of Selective Processes

Joshua T. Herbeck, Wenjie Deng, Morgane Rolland, 2011, Journal of Virology.

Analysis of HLA A*02 Association with Vaccine Efficacy in the RV144 HIV-1 Vaccine Trial

Raphael Gottardo, Tomer Hertz, John Sidney, 2014, Journal of Virology.

Relationship between pre-existing viral reservoirs and the re-emergence of plasma viremia after discontinuation of highly active anti-retroviral therapy

Anthony S. Fauci, Richard T. Davey, J. Mullins, 2000, Nature Medicine.

Dynamics of Viral Evolution and CTL Responses in HIV-1 Infection

Yi Liu, J. Mullins, M. McElrath, 2011, PloS one.