Patrick Ruch

Robert H. Baud, Antoine Geissbühler, Patrick Ruch, 2001, 2001 IEEE International Conference on Systems, Man and Cybernetics. e-Systems and e-Man for Cybernetics in Cyberspace (Cat.No.01CH37236).

Controlling the vocabulary for anatomy

Christian Lovis, Robert H. Baud, Antoine Geissbühler, 2002, AMIA.

The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases

Oliver Horlacher, Damian Szklarczyk, Christian von Mering, 2015, Nucleic Acids Res..

Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases

Patrick Ruch, Julien Gobeill, Emilie Pasche, 2013, Database J. Biol. Databases Curation.

SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data

Sophia Ananiadou, Patrick Ruch, Julien Gobeill, 2017, Wellcome open research.

UMLF: a Unified Medical Lexicon for French

Robert H. Baud, Stéfan Jacques Darmoni, Anita Burgun-Parenthoine, 2005, AMIA.

Tools to Retrieve Reliable Health Information on the Internet - Improvements of the Automated Detection of HONcode Criteria for Mass Health Online Content

Allan Hanbury, Patrick Ruch, Gilles Falquet, 2016 .

Partage de Données Biomédicales sur le Web Sémantique

Christian Lovis, Patrick Ruch, Marie-Christine Jaulent, 2010, WSM@IC.

Closing the loop: from paper to protein annotation using supervised Gene Ontology classification

Patrick Ruch, Julien Gobeill, Emilie Pasche, 2014, Database J. Biol. Databases Curation.

Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications

Nigel Collier, Patrick Ruch, Adeline Nazarenko, 2004 .

Assister la création de guides de bonnes pratiques par des techniques de recherche d’information

Christian Lovis, Patrick Ruch, Julien Gobeill, 2012 .

Contextualized French Language Models for Biomedical Named Entity Recognition

Patrick Ruch, Douglas Teodoro, Nona Naderi, 2020, JEPTALNRECITAL.

Taking Benefit of Query and Document Expansion using MeSH Descriptors in Medical ImageCLEF 2009

Patrick Ruch, Julien Gobeill, Douglas Teodoro, 2009, CLEF.

Automatic assignment of biomedical categories: toward a generic approach

Patrick Ruch, P. Ruch, Patrick Ruch, 2006, Bioinform..

Extracting Key Sentences with Latent Argumentative Structuring

Robert H. Baud, Dietrich Rebholz-Schuhmann, Antoine Geissbühler, 2005, MIE.

GOAssay: from Gene Ontology to Assays IDentifiers – Towards Automatic Functional Annotation of PubChem BioAssays

Rajarshi Guha, Patrick Ruch, Julien Gobeill, 2009 .

A User-Friendly Tool for Medical-Related Patent Retrieval

Christian Lovis, Patrick Ruch, Julien Gobeill, 2012, EFMI-STC.

Using a Question-Answering Approach in Machine Reading Task of Biomedical Texts about the Alzheimer Disease

Patrick Ruch, Julien Gobeill, Dina Vishnyakova, 2013, CLEF.

First Participation of University and Hospitals of Geneva to Domain-Specific Track in CLEF 2008

Patrick Ruch, Julien Gobeill, 2008, CLEF.

Model Selection for Support Vector Classifiers via Direct Simplex Search

Patrick Ruch, Gilles Cohen, Melanie Hilario, 2005, FLAIRS Conference.

SIB Text Mining at TREC 2017 Precision Medicine Track

Patrick Ruch, Julien Gobeill, Douglas Teodoro, 2017 .

Building a Transnational Biosurveillance Network Using Semantic Web Technologies: Requirements, Design, and Preliminary Evaluation

Christian Lovis, Patrick Ruch, Julien Gobeill, 2012, Journal of medical Internet research.

Evaluating and reducing the effect of data corruption when applying bag of words approaches to medical records

Robert H. Baud, Antoine Geissbühler, Patrick Ruch, 2002, Int. J. Medical Informatics.

Medical document anonymization with a semantic lexicon

Robert H. Baud, Patrick Ruch, Pierrette Bouillon, 2000, AMIA.

Using Multimodal Mining to Drive Clinical Guidelines Development

Christian Lovis, Patrick Ruch, Julien Gobeill, 2011, MIE.

Automatic Prior Art Searching and Patent Encoding at CLEF-IP '10

Christian Lovis, Patrick Ruch, Julien Gobeill, 2010, CLEF.

Utilization of Ontology Look-Up Services in Information Retrieval for Biomedical Literature

Christian Lovis, Patrick Ruch, Emilie Pasche, 2013, EFMI-STC.

Learning-Free Text Categorization

Robert H. Baud, Antoine Geissbühler, Patrick Ruch, 2003, AIME.

Machine Learning for Automatic Encoding of French Electronic Medical Records: Is More Data Better?

Patrick Ruch, Julien Gobeill, Rodolphe Meyer, 2020, MIE.

Fusion of Knowledge-Intensive and Statistical Approaches for Retrieving and Annotating Textual Genomics Documents

Jimmy J. Lin, Hongfang Liu, Patrick Ruch, 2005, TREC.

Towards a Unified Medical Lexicon for French

Robert H. Baud, Stéfan Jacques Darmoni, Anita Burgun-Parenthoine, 2003, MIE.

Query Translation by Text Categorization

Patrick Ruch, 2004, COLING.

Challenges and Methodology for Indexing the Computerized Patient Record

Christian Lovis, Antoine Geissbühler, Patrick Ruch, 2007, MedInfo.

Mapping protein information to disease terminologies

Patrick Ruch, Anaïs Mottaz, Yum Lina Yip, 2007, J. Integr. Bioinform..

Using argumentation to retrieve articles with similar citations: An inquiry into improving related articles search in the MEDLINE digital library

Patrick Ruch, Imad Tbahriti, Frédérique Lisacek, 2006, Int. J. Medical Informatics.

BiTeM at CLEF eHealth Evaluation Lab 2016 Task 2: Multilingual Information Extraction

Patrick Ruch, Julien Gobeill, Emilie Pasche, 2016, CLEF.

UMLF : construction d'un lexique médical francophone unifié

Robert H. Baud, Stéfan Jacques Darmoni, Natalia Grabar, 2003 .

Coping with the Variability of Medical Terms

Christian Lovis, Robert H. Baud, Antoine Geissbühler, 2004, MedInfo.

Customizing a variant annotation-support tool :

Patrick Ruch, Julien Gobeill, Douglas Teodoro, 2017 .

BiTeM Group Report for TREC Medical Records Track 2011

Patrick Ruch, Julien Gobeill, Douglas Teodoro, 2011, TREC.

Customizing a Variant Annotation-Support Tool: an Inquiry into Probability Ranking Principles for TREC Precision Medicine

Patrick Ruch, Julien Gobeill, Douglas Teodoro, 2017, TREC.

Selection of relevant articles for curation for the comparative toxicogenomic database

Patrick Ruch, Emilie Pasche, Dina Vishnyakova, 2012 .

3D-printed fluidic networks for high-power-density heat-managing miniaturized redox flow batteries

Patrick Ruch, Dimos Poulikakos, Bruno Michel, 2017 .

Model Selection for Support Vector Classifiers via Direct Search Simplex Method

Patrick Ruch, Gilles Cohen, 2019 .

Minimal Commitment and Full Lexical Disambiguation: Balancing Rules and Hidden Markov Models

Robert H. Baud, Patrick Ruch, Pierrette Bouillon, 2000, CoNLL/LLL.

Managing the data deluge

Patrick Ruch, Julien Gobeill, Emilie Pasche, 2013 .

Dépister efficacement de l'information dans une banque documentaire : L'exemple de MEDLINE

Patrick Ruch, Jacques Savoy, Samir Abdou, 2006, INFORSID.

A light knowledge model for linguistic applications

Christian Lovis, Robert H. Baud, Patrick Ruch, 2001, AMIA.

Integration of biomedical data using federated databases

Patrick Ruch, Julien Gobeill, Douglas Teodoro, 2009 .

Translation by Text Categorisation: Medical Image Retrieval in ImageCLEFmed 2006

Patrick Ruch, Henning Müller, Julien Gobeill, 2006, CLEF.

A portable potentiometric electronic tongue leveraging smartphone and cloud platforms

Patrick Ruch, Yuksel Temiz, Keiji Matsumoto, 2019, 2019 IEEE International Symposium on Olfaction and Electronic Nose (ISOEN).

Assessing CNN and RNN models to classify scientific literature into UniProt entry categories

Patrick Ruch, Douglas Teodoro, Cecilia N. Arighi, 2019 .

Overview of the BioCreative VI text-mining services for Kinome Curation Track

Zhiyong Lu, Patrick Ruch, Julien Gobeill, 2018, Database J. Biol. Databases Curation.

Conceptual Search in Electronic Patient Record

Christian Lovis, Robert H. Baud, Patrick Ruch, 2001, MedInfo.

A Qualitative Task Analysis of Biomedical Image Use and Retrieval

Patrick Ruch, Henning Müller, Paul N. Gorman, 2005 .

Report on the CLEF Experiment: Combining Image and Multilingual Search for Medical Image Retrieval

Antoine Geissbühler, Patrick Ruch, Henning Müller, 2004, CLEF.

Named entity recognition in chemical patents using ensemble of contextual language models pdf

Patrick Ruch, Douglas Teodoro, Nona Naderi, 2020, CLEF.

Report on the TREC 2003 Experiment: Genomic Track

Patrick Ruch, Frédéric Ehrler, Henning Müller, 2003, TREC.

The power and limits of a rule-based morpho-semantic parser

Christian Lovis, Robert H. Baud, Jean-Raoul Scherrer, 1999, AMIA.

Exploiting incoming and outgoing citations for improving Information Retrieval in the TREC 2015 Clinical Decision Support Track

Patrick Ruch, Julien Gobeill, Arnaud Gaudinat, 2015, TREC.

Designing retrieval models to contrast precision-driven ad hoc search vs. recall-driven treatment extraction in Precision Medicine

Patrick Ruch, Julien Gobeill, Emilie Pasche, 2019, TREC.

Exploring a Wide Range of Simple Pre and Post Processing Strategies for Patent Searching in CLEF IP 2009

Patrick Ruch, Julien Gobeill, Douglas Teodoro, 2009, CLEF.

MEDTAG: tag-like semantics for medical document indexing

Judith C. Wagner, Robert H. Baud, Jean-Raoul Scherrer, 1999, AMIA.

UniProt: the universal protein knowledgebase in 2021

Peter B. McGarvey, Cathy H. Wu, Alex Bateman, 2020, Nucleic Acids Res..

Quantification of Multi-Ion Mixtures Using a Machine Learning Assisted Integrated Electronic Tongue Leveraging Mobile and Cloud Platforms

Patrick Ruch, Kitahiro Kaneda, Yuksel Temiz, 2021, ECS Meeting Abstracts.

Ensemble of Deep Masked Language Models for Effective Named Entity Recognition in Health and Life Science Corpora

Patrick Ruch, Douglas Teodoro, Nona Naderi, 2021, Frontiers in Research Metrics and Analytics.

Overview of BioCreative VI Kinome Track Text-mining services for Kinome Curation

Patrick Ruch, Julien Gobeill, Pascale Gaudet, 2017 .

DebugIT: building a European distributed clinical data mining network to foster the fight against microbial diseases.

Christian Lovis, Patrick Ruch, Emilie Pasche, 2009, Studies in health technology and informatics.

Text mining for Swiss-Prot curation: A story of success and failure

Patrick Ruch, Yum Lina Yip, Anne-Lise Veuthey, 2009 .

DisProt: intrinsic protein disorder annotation in 2020

Silvio C. E. Tosatto, Arne Elofsson, Marco Necci, 2019, Nucleic Acids Res..

Suicide Notes: Their Utility in Understanding the Motivations Behind Suicide and Preventing Future Ones

Patrick Ruch, G. Niveau, T. Fracasso, 2018, Archives of suicide research : official journal of the International Academy for Suicide Research.