R. Kato

发表

CoryneRegNet 7, the reference database and analysis platform for corynebacterial gene regulatory networks

J. Baumbach, A. Tauch, V. Azevedo, 2020, Scientific Data.

Foliar mycoendophytome of an endemic plant of the Mediterranean biome (Myrtus communis) reveals the dominance of basidiomycete woody saprotrophs

V. Azevedo, C. Rosa, A. Góes-Neto, 2020, PeerJ.

Computational Genomics

R. Ramos, R. Kato, Fabrício Araújo, 2021, Advances in Bioinformatics.

Analysis of the microarray gene expression for breast cancer progression after the application modified logistic regression.

D. Barh, J. M. Ortega, P. Ghosh, 2019, Gene.

In Silico Designed Multi-Epitope Immunogen “Tpme-VAC/LGCM-2022” May Induce Both Cellular and Humoral Immunity against Treponema pallidum Infection

D. Barh, V. Azevedo, S. Tiwari, 2022, Vaccines.

Identification of potential Leishmania chagasi superoxide dismutase allosteric modulators by structure-based computational approaches: homology modelling, molecular dynamics and pharmacophore-based virtual screening

F. H. Leite, R. Kato, S. Pita, 2020, Journal of biomolecular structure & dynamics.

Draft genome sequence of Trametes villosa (Sw.) Kreisel CCMB561, a tropical white-rot Basidiomycota from the semiarid region of Brazil

B. Brenig, V. Azevedo, A. Góes-Neto, 2018, Data in brief.

From In-Person to the Online World: Insights Into Organizing Events in Bioinformatics

Heron O. Hilário, Diego C. B. Mariano, Joicymara S. Xavier, 2021, Frontiers in Bioinformatics.

Functional annotation and comparative modeling of ligninolytic enzymes from Trametes villosa (SW.) Kreisel for biotechnological applications

J. S. C. Araújo, I. B. Santana, F. H. Leite, 2021, Journal of biomolecular structure & dynamics.

Characterization of the first vaginal Lactobacillus crispatus genomes isolated in Brazil

P. Ghosh, B. Brenig, V. Azevedo, 2021, PeerJ.

Molecular dynamics simulations of the SARS-CoV-2 Spike protein and variants of concern: structural evidence for convergent adaptive evolution

P. Zanotto, V. Azevedo, A. Góes-Neto, 2022, Journal of biomolecular structure & dynamics.

New putative therapeutic targets against Serratia marcescens using reverse vaccinology and subtractive genomics

D. Barh, V. Azevedo, S. Tiwari, 2021, Journal of biomolecular structure & dynamics.

Comparative genomic analysis of ovine and other host associated isolates of Staphylococcus aureus exhibit the important role of mobile genetic elements and virulence factors in host adaptation.

Y. Le Loir, V. Azevedo, B. Brenig, 2022, Gene.

Immunoinformatics Design of Multi-Epitope Peptide-Based Vaccine Against Schistosoma mansoni Using Transmembrane Proteins as a Target

Eduardo H. B. Maia, V. Azevedo, S. Tiwari, 2021, Frontiers in Immunology.

Putting the Mess in Order: Aspergillus welwitschiae (and Not A. niger) Is the Etiological Agent of Sisal Bole Rot Disease in Brazil

V. Azevedo, A. Góes-Neto, R. Kato, 2018, Front. Microbiol..

Genetic algorithms coupled with quantum mechanics for refinement of force fields for RNA simulation: a case study of glycosidic torsions in the canonical ribonucleosides.

J. C. Belchior, Gisele L Pappa, G. Pappa, 2015, Physical chemistry chemical physics : PCCP.

An immunoinformatics-based designed multi-epitope candidate vaccine (mpme-VAC/STV-1) against Mycoplasma pneumoniae

Khalid J. Alzahrani, D. Barh, V. Azevedo, 2021, Comput. Biol. Medicine.

On the Consistency between Gene Expression and the Gene Regulatory Network of Corynebacterium glutamicum

J. Baumbach, A. Tauch, V. Azevedo, 2021, Network and systems medicine.

Genomic evidence of SARS-CoV-2 reinfection case with the emerging B.1.2 variant in Brazil

T. de Oliveira, L. Alcântara, A. B. Reis, 2021, Journal of Infection.

Field and classroom initiatives for portable sequence-based monitoring of dengue virus in Brazil

E. Holmes, R. B. Reis, T. de Oliveira, 2021, Nature Communications.

Shotgun Metagenomic Analysis of Kombucha Mutualistic Community Exposed to Mars-like Environment outside the International Space Station.

D. Barh, V. Azevedo, B. Brenig, 2021, Environmental microbiology.

Unraveling the Genomic Potential of the Thermophilic Bacterium Anoxybacillus flavithermus from an Antarctic Geothermal Environment

B. Brenig, A. Rosado, A. Góes-Neto, 2022, Microorganisms.

An Integrated Database of Small RNAs and Their Interplay With Transcriptional Gene Regulatory Networks in Corynebacteria

R. Backofen, J. Baumbach, V. Azevedo, 2021, Frontiers in Microbiology.

Microbial–physicochemical integrated analysis of kombucha fermentation

C. Rosa, A. Góes-Neto, A. Uetanabaro, 2021 .

The Space-Exposed Kombucha Microbial Community Member Komagataeibacter oboediens Showed Only Minor Changes in Its Genome After Reactivation on Earth

D. Barh, B. Brenig, O. Reva, 2022, Frontiers in Microbiology.

CoryneRegNet 7, the reference database and analysis platform for corynebacterial gene regulatory networks

J. Baumbach, A. Tauch, V. Azevedo, 2020, Scientific Data.

An Integrative View of the Phyllosphere Mycobiome of Native Rubber Trees in the Brazilian Amazon

A. Góes-Neto, G. Oliveira, R. Kato, 2022, Journal of fungi.

Lactobacillus crispatus protects against bacterial vaginosis

D. Barh, P. Ghosh, V. Azevedo, 2019 .

Unraveling the Secrets of a Double-Life Fungus by Genomics: Ophiocordyceps australis CCMB661 Displays Molecular Machinery for Both Parasitic and Endophytic Lifestyles

V. Azevedo, B. Brenig, S. Ribeiro, 2023, Journal of fungi.

Comparative genomics with a multidrug-resistant Klebsiella pneumoniae isolate reveals the panorama of unexplored diversity in Northeast Brazil.

D. Barh, P. Ghosh, B. Brenig, 2020, Gene.

Characterization of a new multidrug-resistant Brazilian K. pneumoniae isolate and 172 Klebsiella spp. sequenced strains: Genomic island, multilocus sequence typing and capsule locus dataset

D. Barh, P. Ghosh, B. Brenig, 2021, Data in brief.

Pan-genomics of fungi and its applications

D. Barh, V. Azevedo, S. Tiwari, 2020 .

Genomic investigation of antimicrobial resistance in Brucella abortus strains isolated from cattle in Brazil

J. Foster, D. Pickard, J. Gillece, 2023, Gene Reports.

Unveiling Fungal Community Structure along Different Levels of Anthropic Disturbance in a South American Subtropical Lagoon

V. Azevedo, B. Brenig, J. Geml, 2023, Journal of fungi.