Torsten Seemann

发表

MammoSapiens: eResearch of the lactation program. Building online facilities for collaborative molecular and evolutionary analysis of lactation and other biological systems from gene sequences and gene expression data.

Kevin R. Nicholas, Amit Kumar, Yvan Strahm, 2008 .

SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

Aidan Delaney, Andrew J. Page, Simon R. Harris, 2016 .

Galaxy Genome Annotation project: Integrating Galaxy and GMOD for genome annotation

Anthony Bretaudeau, Torsten Seemann, Nathan Dunn, 2018 .

VAGUE: a graphical user interface for the Velvet assembler

Torsten Seemann, David R. Powell, T. Seemann, 2013, Bioinform..

Digital Image Processing using Local Segmentation

Torsten Seemann, Torsten Seemann, T. Seemann, 2002 .

Comparison Of Multi-locus Sequence Typing software For next generation sequencing data

Torsten Seemann, Jacqueline A. Keane, Lee S. Katz, 2017, bioRxiv.

Structure preserving noise filtering of images using explicit local segmentation

Peter E. Tischer, Torsten Seemann, 1998, Proceedings. Fourteenth International Conference on Pattern Recognition (Cat. No.98EX170).

MammoSapiens: eResearch of the lactation program.

Kevin R. Nicholas, Amit Kumar, Yvan Strahm, 2008 .

MML based noise cleaning of images

Torsten Seemann, Peter E Tischer, 1997 .

GFF3toEMBL: Preparing annotated assemblies for submission to EMBL

Andrew J. Page, Sascha Steinbiss, Torsten Seemann, 2016, J. Open Source Softw..

History-based blending of image sub-predictors

Bernd Meyer, Torsten Seemann, Peter E Tischer, 1997 .

SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

Simon R. Harris, Torsten Seemann, Jacqueline A. Keane, 2016, bioRxiv.

Sprints, Hackathons and Codefests as community gluons in computational biology

Olivier Sallou, Enis Afgan, Pjotr Prins, 2013 .

SaffronTree: Fast, reference-free pseudo-phylogenomic trees from reads or contigs

Andrew J. Page, Martin Hunt, Torsten Seemann, 2017, J. Open Source Softw..

Prokka: rapid prokaryotic genome annotation

Torsten Seemann, Bryan S. Biehl, Anna I. Rissman, 2014, Bioinform..

Ten recommendations for creating usable bioinformatics command line software

Torsten Seemann, T. Seemann, 2013, GigaScience.

Best practice data life cycle approaches for the life

Ute Roessner, Maria Victoria Schneider, Suzanna E Lewis, 2019 .

Genomic Insights to Control the Emergence of Vancomycin-Resistant Enterococci

Torsten Seemann, Steven Y. C. Tong, Susan Ballard, 2013, mBio.

Isolation and rapid sharing of the 2019 novel coronavirus (SARS‐CoV‐2) from the first patient diagnosed with COVID‐19 in Australia

Torsten Seemann, Julian Druce, Mark B. Schultz, 2020, The Medical journal of Australia.

Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus

Torsten Seemann, Ben Adler, Qinghu Ren, 2007, Nature Biotechnology.

Evolution of Multidrug Resistance during Staphylococcus aureus Infection Involves Mutation of the Essential Two Component Regulator WalKR

Torsten Seemann, Wei Gao, Benjamin P. Howden, 2011, PLoS pathogens.

Comparison of classical multi-locus sequence typing software for next-generation sequencing data

Nabil-Fareed Alikhan, Torsten Seemann, Jacqueline A. Keane, 2017, Microbial genomics.

Colistin Resistance in Acinetobacter baumannii Is Mediated by Complete Loss of Lipopolysaccharide Production

Jian Li, Torsten Seemann, Ben Adler, 2010, Antimicrobial Agents and Chemotherapy.

Prospective Whole-Genome Sequencing Enhances National Surveillance of Listeria monocytogenes

Torsten Seemann, Benjamin P. Howden, Dieter M. Bulach, 2015, Journal of Clinical Microbiology.

Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software

Torsten Seemann, Peter Georgeson, Harriet Dashnow, 2019, GigaScience.

A sustained hospital outbreak of vancomycin-resistant Enterococcus faecium bacteremia due to emergence of vanB E. faecium sequence type 203.

Torsten Seemann, Susan A Ballard, T. Seemann, 2010, The Journal of infectious diseases.

Complete Genome Sequence of the Frog Pathogen Mycobacterium ulcerans Ecovar Liflandii

Torsten Seemann, Marnix H. Medema, Kenneth D. Doig, 2012, Journal of bacteriology.

PAT-seq: a method to study the integration of 3′-UTR dynamics with gene expression in the eukaryotic transcriptome

Torsten Seemann, Thomas Preiss, Jennifer L Clancy, 2015, RNA.

Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis.

Julian Parkhill, Torsten Seemann, Brian White, 2008, Genome research.

Best practice data life cycle approaches for the life sciences

Ute Roessner, Maria Victoria Schneider, Suzanna E Lewis, 2017, bioRxiv.

Pseudomonas aeruginosa AES-1 Exhibits Increased Virulence Gene Expression during Chronic Infection of Cystic Fibrosis Lung

Torsten Seemann, Lynne Turnbull, Cynthia Whitchurch, 2011, PloS one.