Sarah K. Young

发表

DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage

David C. Schwartz, Jane Loveland, Eric S. Lander, 2006, Nature.

Comparative genomics and transcriptomics of Pichia pastoris

J. Christopher Love, Duanduan Ma, J. C. Love, 2016, BMC Genomics.

Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal

Thomas Abeel, Qiandong Zeng, Bruce W. Birren, 2015, PLoS medicine.

Whole Genome Deep Sequencing of HIV-1 Reveals the Impact of Early Minor Variants Upon Immune Recognition During Acute Infection

Huldrych F. Günthard, Michael C. Zody, Qiandong Zeng, 2012, PLoS pathogens.

Structure, Function and Diversity of the Healthy Human Microbiome

Katherine H. Huang, Daniel D. Sommer, Zhengyuan O. Wang, 2012, Nature.

Contrasting host–pathogen interactions and genome evolution in two generalist and specialist microsporidian pathogens of mosquitoes

Christina A. Cuomo, David I Heiman, Q. Zeng, 2015, Nature Communications.

Transmission of human-associated microbiota along family and social networks

Katherine H. Huang, D. Gevers, Terrance P. Shea, 2019, Nature Microbiology.

A framework for human microbiome research

Katherine H. Huang, Daniel D. Sommer, Zhengyuan O. Wang, 2012, Nature.

RNA-Seq methods for imperfect samples: development, evaluation and applications

A. Sivachenko, J. Levin, X. Adiconis, 2011, Genome Biology.

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

Christina A. Cuomo, Q. Zeng, J. Wortman, 2014, PloS one.

Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

James K. Hane, Terrance P. Shea, Sarwar Azam, 2016, BMC Genomics.

Source (or Part of the following Source): Type Article Title Comparative Genomics Reveals Mobile Pathogenicity Chromosomes in Fusarium Author(s)

Christina A. Cuomo, M. Grabherr, Q. Zeng, 2022 .

ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads

A. Gnirke, C. Nusbaum, S. Ranade, 2009, Genome Biology.

Paired-end sequencing of Fosmid libraries by Illumina

A. Gnirke, C. Nusbaum, D. Tabbaa, 2012, Genome research.

Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence

James K. Hane, Wendy S. Schackwitz, Q. Zeng, 2013, G3: Genes | Genomes | Genetics.

The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum

A. Dash, Q. Zeng, B. Birren, 2012, Nature Genetics.

Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance

Christina A. Cuomo, R. Bhattacharyya, Terrance P. Shea, 2021, Genome Medicine.

Genome Sequence of Fusarium oxysporum f. sp. melonis Strain NRRL 26406, a Fungus Causing Wilt Disease on Melon

Q. Zeng, Terrance P. Shea, S. Young, 2014, Genome Announcements.

Genomic sequences of a low passage herpes simplex virus 2 clinical isolate and its plaque-purified derivative strain.

Ruchi M. Newman, M. Henn, S. Young, 2014, Virology.

A comprehensive genomic history of extinct and living elephants

Tat-Jun Chin, Thomas Mailund, Swapan Mallick, 2018, Proceedings of the National Academy of Sciences.

The genome of the green anole lizard and a comparative analysis with birds and mammals

Jacob D. Jaffe, David I Heiman, D. Haussler, 2011, Nature.

DNA sequence and analysis of human chromosome 18

Sinead B. O'Leary, Christina A. Cuomo, Jean L. Chang, 2005, Nature.

Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes

Q. Zeng, B. Birren, C. Nusbaum, 2010, PloS one.

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome

Vivek Krishnakumar, Michalis Hadjithomas, Cédric Feschotte, 2016, eLife.

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

Robert M. Waterhouse, Gloria I. Giraldo-Calderón, Daniel R. Caffrey, 2016, Nature Communications.

Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth

Christina A. Cuomo, David I Heiman, J. Levin, 2012, Genome research.

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

Rachel S. G. Sealfon, Pardis C Sabeti, Donald S. Grant, 2014, Science.

Comparative Functional Genomics of the Fission Yeasts

Manolis Kellis, Nir Friedman, Hanah Margalit, 2011, Science.

Premetazoan genome evolution and the regulation of cell differentiation in the choanoflagellate Salpingoeca rosetta

B. Haas, Q. Zeng, Zehua Chen, 2013, Genome Biology.

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

Neil Moore, Bernard Henrissat, Yoshitaka Takano, 2012, Nature Genetics.

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

Katherine H. Huang, Luke R Thompson, Luke R. Thompson, 2010, Environmental microbiology.

Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication

Eric S. Lander, Leif Andersson, Daniel Barrell, 2014, Science.

A Catalog of Reference Genomes from the Human Microbiome

B. Haas, Q. Zeng, B. Birren, 2010, Science.

The genome of opportunistic fungal pathogen Fusarium oxysporum carries a unique set of lineage-specific chromosomes

Dilay Hazal Ayhan, Q. Zeng, D. Schwartz, 2020, Communications Biology.

Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci

Christina A. Cuomo, J. Levin, X. Adiconis, 2016, G3: Genes, Genomes, Genetics.

Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011

Eric S. Lander, Yonatan H. Grad, Marc Lipsitch, 2012, Proceedings of the National Academy of Sciences.