Hiroyuki Aburatani

发表

Genome Informatics 14: 34--43 (2003) Reducing False Positives in Molecular Pattern

Shuichi Iwata, Xijin Ge, Shuichi Tsutsumi, 2022 .

Multidimensional support vector machines for visualization of gene expression data

Hiroshi Nakamura, Sigeo Ihara, Shuichi Tsutsumi, 2004, SAC '04.

Gene set-based module discovery in the breast cancer transcriptome

Michael Q. Zhang, Andrew D. Smith, Atsushi Niida, 2009, BMC Bioinformatics.

Visualization of gene expression data using the pathway information in a cell

Michitaka Hirose, Koichi Hirota, Kunihiro Nishimura, 2002 .

Multidimensional support vector machines for visualization of gene expression data

Hiroshi Nakamura, Sigeo Ihara, Shuichi Tsutsumi, 2004, SAC '04.

Gene Expression Analysis using Immersive Projection Display

Michitaka Hirose, Makoto Kano, Hiroyuki Aburatani, 2001 .

CHILDREN'S SEAT PREFERENCE AND SEATING POSITION IN THE CLASSROOM OF ELEMENTARY SCHOOL

Fumihito Miyamoto, Hiroyuki Aburatani, Katsumi Yamaguchi, 1994 .

Genomic approach towards personalized anticancer drug therapy.

Hiroyuki Aburatani, Shingo Tsuji, Yutaka Midorikawa, 2012, Pharmacogenomics.

Visualization for genome function analysis using immersive projection technology

Michitaka Hirose, Koichi Hirota, Kunihiro Nishimura, 2002, Proceedings IEEE Virtual Reality 2002.

Abstract B1-08: Deep learning for the large-scale cancer data analysis

Hiroyuki Aburatani, Shingo Tsuji, 2015 .

A simple knowledge-based mining method for exploring hidden key molecules in a human biomolecular network

Sigeo Ihara, Hiroyuki Aburatani, Shingo Tsuji, 2012, BMC Systems Biology.

Visualization for genome function analysis

Michitaka Hirose, Koichi Hirota, Kunihiro Nishimura, 2001, Proceedings IEEE Virtual Reality 2001.

Gene Discovery of G-Protein Coupled Receptors from Human Genome

Toshiyuki Sato, Kiyoshi Asai, Shuichi Tsutsumi, 2000 .

Characteristics of Support Vector Machines in Gene Expression Analysis

Hiroshi Nakamura, Sigeo Ihara, Shuichi Tsutsumi, 2002 .

Gene Selection Using Gene Expression Data in a Virtual Environment

Michitaka Hirose, Koichi Hirota, Kunihiro Nishimura, 2002 .

Cluster Overlap Distribution Map: Visualization for Gene Expression Analysis Using Immersive Projection Technology

Michitaka Hirose, Makoto Kano, Shuichi Tsutsumi, 2003, Presence: Teleoperators & Virtual Environments.

CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data

Koji Tsuda, Hiroyuki Aburatani, David duVerle, 2016, BMC Bioinformatics.

Genome-wide maps of mono- and di-nucleosomes of Aspergillus fumigatus

Hiroyuki Aburatani, Hiroyuki Osada, Hiromi Nishida, 2009, Bioinform..

Visualization for Comparison between Gene Clusters Generated from Different Sources

Michitaka Hirose, Makoto Kano, Shuichi Tsutsumi, 2001 .

Study on Requirement Spatial-size for the Visualization of the Gene Expression Data

Michitaka Hirose, Koichi Hirota, Kunihiro Nishimura, 2003 .

Abstract B1-06: Tumor genotyping using full cloud based pipeline

Hiroyuki Aburatani, Hiroki R. Ueda, Shogo Yamamoto, 2015 .

CARAT: A novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays

Jing Huang, Rui Mei, Guoying Liu, 2006, BMC Bioinformatics.

Additional file 9 of CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data

Koji Tsuda, Hiroyuki Aburatani, Sohiya Yotsukura, 2016 .

A PCA Based Method of Gene Expression Visual Analysis

Michitaka Hirose, Koichi Hirota, Kunihiro Nishimura, 2003 .

Virtual environment design guidelines for gene expression analysis: the utility of a lab bench metaphor and a road metaphor

Michitaka Hirose, Koichi Hirota, Koji Abe, 2004, IEEE Virtual Reality 2004.

Artificial intelligence-based computational framework for drug-target prioritization and inference of novel repositionable drugs for Alzheimer’s disease

Samik Ghosh, Hiroaki Kitano, Kazuro Shimokawa, 2020, Alzheimer's Research & Therapy.

Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells

Michael Q. Zhang, Andrew D. Smith, Atsushi Niida, 2008, BMC Bioinformatics.

Noise Reduction from Genotyping Microarrays Using Probe Level Information

Jing Huang, Michitaka Hirose, Hiroshi Nakamura, 2006, Silico Biol..

Selective Expression of a Subset of Neuronal Genes in Oligodendroglioma with Chromosome 1p Loss

Hiroyuki Aburatani, Takaaki Kirino, Shumpei Ishikawa, 2004, Brain pathology.

High-resolution characterization of a hepatocellular carcinoma genome

Hidenori Ojima, Yasushi Totoki, Shuichi Tsutsumi, 2011, Nature Genetics.

ASCL1-coexpression profiling but not single gene expression profiling defines lung adenocarcinomas of neuroendocrine nature with poor prognosis.

Hitoshi Nomura, Hiroyuki Aburatani, Masaaki Matsuura, 2012, Lung cancer.

The glypican 3 oncofetal protein is a promising diagnostic marker for hepatocellular carcinoma

Hiroyuki Aburatani, Masaya Mori, Yutaka Midorikawa, 2005, Modern Pathology.

Dynamically and epigenetically coordinated GATA/ETS/SOX transcription factor expression is indispensable for endothelial cell differentiation

Teppei Shimamura, Hiroyuki Aburatani, Tatsuhiko Kodama, 2017, Nucleic acids research.

Integrated genetic and epigenetic analysis defines novel molecular subgroups in rhabdomyosarcoma

Satoru Miyano, Yuichi Shiraishi, Teppei Shimamura, 2015, Nature Communications.

Gli2 Is a Novel Regulator of Sox2 Expression in Telencephalic Neuroepithelial Cells

Hiroyuki Aburatani, Kenji Nishide, H. Aburatani, 2009, Stem cells.

Two subclasses of lung squamous cell carcinoma with different gene expression profiles and prognosis identified by hierarchical clustering and non-negative matrix factorization

Carl Virtanen, Hitoshi Nomura, Hiroyuki Aburatani, 2005, Oncogene.

Multilayer-omics analysis of renal cell carcinoma, including the whole exome, methylome and transcriptome

Hiroyuki Aburatani, Hirohiko Totsuka, Hitoshi Ichikawa, 2014, International journal of cancer.

The S100A8–serum amyloid A3–TLR4 paracrine cascade establishes a pre-metastatic phase

Hiroyuki Aburatani, Shizuo Akira, H. Aburatani, 2008, Nature Cell Biology.

Mechanisms of genomic instabilities underlying two common fragile-site-associated loci, PARK2 and DMD, in germ cell and cancer cell lines.

Nobutaka Hattori, Hiroyuki Aburatani, Hiroyuki Tomiyama, 2010, American journal of human genetics.

PH Domain-Only Protein PHLDA3 Is a p53-Regulated Repressor of Akt

Tsutomu Ohta, Shuichi Tsutsumi, Hiroyuki Aburatani, 2009, Cell.

Global gene expression analysis of rat colon cancers induced by a food-borne carcinogen, 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine.

Tsutomu Ohta, Misao Ohki, Hiroyuki Aburatani, 2004, Carcinogenesis.

Recurrent gain-of-function mutations of RHOA in diffuse-type gastric carcinoma

Atsushi Tanaka, Hiroyuki Aburatani, Ikuo Wada, 2014, Nature Genetics.

Functions and regulation of MUC13 mucin in colon cancer cells

Hiroyuki Aburatani, Meena Jaggi, Subhash C. Chauhan, 2014, Journal of Gastroenterology.

AKR1B10 in usual interstitial pneumonia: expression in squamous metaplasia in association with smoking and lung cancer.

Hiroyuki Aburatani, Masashi Fukayama, Satoshi Ota, 2008, Pathology, research and practice.

Molecular basis of myotonic dystrophy: Expansion of a trinucleotide (CTG) repeat at the 3′ end of a transcript encoding a protein kinase family member

David E. Housman, Russell G. Snell, Hiroyuki Aburatani, 1992, Cell.

SB-431542 and Gleevec inhibit transforming growth factor-beta-induced proliferation of human osteosarcoma cells.

Hiroyuki Aburatani, Takeshi Imamura, Kohei Miyazono, 2003, Cancer research.

Tumour-mediated upregulation of chemoattractants and recruitment of myeloid cells predetermines lung metastasis

Hiroyuki Aburatani, H. Aburatani, S. Hiratsuka, 2006, Nature Cell Biology.

High-resolution mapping of DNA methylation in human genome using oligonucleotide tiling array

Shuichi Tsutsumi, Hiroyuki Aburatani, H. Aburatani, 2006, Human Genetics.

Genome-wide Approaches Reveal Functional Vascular Endothelial Growth Factor (VEGF)-inducible Nuclear Factor of Activated T Cells (NFAT) c1 Binding to Angiogenesis-related Genes in the Endothelium*

Hiroyuki Aburatani, Tatsuhiko Kodama, H. Aburatani, 2014, The Journal of Biological Chemistry.

Distinct molecular profile of diffuse cerebellar gliomas

Yoshihiro Muragaki, Takashi Maruyama, Shota Tanaka, 2017, Acta Neuropathologica.

Phosphatidylinositol 3-Kinase–Akt Pathway Plays a Critical Role in Early Cardiomyogenesis by Regulating Canonical Wnt Signaling

Hiroyuki Aburatani, Hiroyuki Takano, Hiroshi Akazawa, 2005, Circulation research.

Vascular Endothelial Growth Factor- and Thrombin-induced Termination Factor, Down Syndrome Critical Region-1, Attenuates Endothelial Cell Proliferation and Angiogenesis*♦

Takahide Kohro, Hiroyuki Aburatani, Tatsuhiko Kodama, 2004, Journal of Biological Chemistry.

Skeletal Muscle FOXO1 (FKHR) Transgenic Mice Have Less Skeletal Muscle Mass, Down-regulated Type I (Slow Twitch/Red Muscle) Fiber Genes, and Impaired Glycemic Control*[boxs]

Hiroyuki Aburatani, Ichizo Nishino, Junichiro Matsuda, 2004, Journal of Biological Chemistry.

RUNX1, an androgen- and EZH2-regulated gene, has differential roles in AR-dependent and -independent prostate cancer

Yukio Homma, Shuichi Tsutsumi, Hiroyuki Aburatani, 2014, Oncotarget.

Alternative splicing of CD44 mRNA by ESRP1 enhances lung colonization of metastatic cancer cell

Hiroshi Tanaka, Takashi Masuko, Hiroyuki Aburatani, 2012, Nature Communications.

Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms

Masao Nagasaki, Satoru Miyano, Yuichi Shiraishi, 2012, Nature Genetics.

A global map of p53-binding sites in the human genome

Shuichi Tsutsumi, Hiroyuki Aburatani, Katsuhiko Shirahige, 2007 .

ChIP-seq reveals cell type-specific binding patterns of BMP-specific Smads and a novel binding motif

Shuichi Tsutsumi, Hiroyuki Aburatani, Kohei Miyazono, 2011, Nucleic acids research.

Two distinct gene expression signatures in pediatric acute lymphoblastic leukemia with MLL rearrangements.

Misao Ohki, Shuichi Tsutsumi, Hiroyuki Aburatani, 2003, Cancer research.

Overexpression of the Aldo-Keto Reductase Family Protein AKR1B10 Is Highly Correlated with Smokers' Non–Small Cell Lung Carcinomas

Hiroyuki Aburatani, Hirotaka Ito, Masaharu Nishimura, 2005, Clinical Cancer Research.

H3F3A K27M mutations in thalamic gliomas from young adult patients.

Kuniaki Saito, Hiroyuki Aburatani, Kenji Tatsuno, 2014, Neuro-oncology.

Topological and functional discovery in a gene coexpression meta-network of gastric cancer.

Hiroyuki Aburatani, Alex Boussioutas, Kent-Man Chu, 2006, Cancer research.

Identification of Toll-Like Receptor 3 as a Potential Therapeutic Target in Clear Cell Renal Cell Carcinoma

Hiroyuki Aburatani, Tatsuhiko Kodama, Masashi Fukayama, 2007, Clinical Cancer Research.

Trans-ancestry mutational landscape of hepatocellular carcinoma genomes

Hiromi Nakamura, Hidenori Ojima, Yasushi Totoki, 2014, Nature Genetics.

A role for macrophage scavenger receptors in atherosclerosis and susceptibility to infection

Yukiko Kurihara, Akiyo Matsumoto, Hiroyuki Aburatani, 1997, Nature.

Distinction in gene expression profiles of oligodendrogliomas with and without allelic loss of 1p

Shuichi Tsutsumi, Hiroyuki Aburatani, Takaaki Kirino, 2002, Oncogene.

Dynamic Change of Chromatin Conformation in Response to Hypoxia Enhances the Expression of GLUT3 (SLC2A3) by Cooperative Interaction of Hypoxia-Inducible Factor 1 and KDM3A

Teppei Shimamura, Takahide Kohro, Takanori Fujita, 2012, Molecular and Cellular Biology.

Identification of CCDC6-RET Fusion in the Human Lung Adenocarcinoma Cell Line, LC-2/ad

Hiroyuki Aburatani, Hiroaki Kataoka, Shumpei Ishikawa, 2012, Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer.

Allelic imbalances and homozygous deletion on 8p23.2 for stepwise progression of hepatocarcinogenesis

Hiroyuki Aburatani, Yutaka Midorikawa, Shumpei Ishikawa, 2009, Hepatology.

Targets of transcriptional regulation by two distinct type I receptors for transforming growth factor‐β in human umbilical vein endothelial cells

Hiroyuki Aburatani, Kohei Miyazono, H. Aburatani, 2002, Journal of cellular physiology.

Whole-exome sequencing of human pancreatic cancers and characterization of genomic instability caused by MLH1 haploinsufficiency and complete deficiency.

Yasushi Totoki, Shuichi Tsutsumi, Hiroyuki Aburatani, 2012, Genome research.

Global gene expression analysis of gastric cancer by oligonucleotide microarrays.

Shuichi Tsutsumi, Hiroyuki Aburatani, Tatsuhiko Kodama, 2002, Cancer research.

Population-genetic nature of copy number variations in the human genome

Yusuke Nakamura, Takahisa Kawaguchi, Tatsuhiko Tsunoda, 2009, Human molecular genetics.

Integrated Multiregional Analysis Proposing a New Model of Colorectal Cancer Evolution

Satoru Miyano, Yuichi Shiraishi, Teppei Shimamura, 2016, PLoS genetics.

Allelic dosage analysis with genotyping microarrays.

Hiroyuki Aburatani, Daisuke Komura, Kunihiro Nishimura, 2005, Biochemical and biophysical research communications.

Regulation of SREBP1c gene expression in skeletal muscle: role of retinoid X receptor/liver X receptor and forkhead-O1 transcription factor.

Hiroyuki Aburatani, Yoshihiro Ogawa, H. Aburatani, 2008, Endocrinology.

PRC2 overexpression and PRC2-target gene repression relating to poorer prognosis in small cell lung cancer

Takanori Fujita, Ryota Yamanaka, Hiroyuki Aburatani, 2013, Scientific Reports.

Engineered CRISPR-Cas9 nuclease with expanded targeting space

Nozomu Yachie, Hiroyuki Aburatani, Feng Zhang, 2018, Science.