Zhirong Bao

发表

Cellular structure image classification with small targeted training samples

Zi Wang, Dali Wang, Zheng Lu, 2019, bioRxiv.

A semi-local neighborhood-based framework for probabilistic cell lineage tracing

Anthony Santella, Zhirong Bao, Zhuo Du, 2014, BMC Bioinformatics.

AceTree: a major update and case study in the long term maintenance of open-source scientific software

Anthony Santella, Zhirong Bao, Braden Katzman, 2018, BMC Bioinformatics.

Accelerating iterative deconvolution and multiview fusion by orders of magnitude

Patrick J. La Riviere, Huafeng Liu, Min Guo, 2019, bioRxiv.

Augmenting C. elegans Microscopic Dataset for Accelerated Pattern Recognition pdf

Dali Wang, Zheng Lu, Zhirong Bao, 2019, ArXiv.

Deep reinforcement learning of cell movement in the early stage of C.elegans embryogenesis

Zi Wang, Husheng Li, Dali Wang, 2018, Bioinform..

A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D

Anthony Santella, Zhirong Bao, Zhuo Du, 2010, BMC Bioinformatics.

Using High Performance Computing to Model Cellular Embryogenesis

Dali Wang, Chung Ng, Kwai Wong, 2016, XSEDE.

Digital development: a database of cell lineage differentiation in C. elegans with lineage phenotypes, cell-specific gene functions and a multiscale model

Anthony Santella, Zhirong Bao, David H. Hall, 2015, Nucleic Acids Res..

Irises: A practical tool for image-based analysis of cellular DNA content.

Anthony Santella, Zhirong Bao, E Jane Albert Hubbard, 2014, Worm.

An imaging and analysis toolset for the study of Caenorhabditis elegans neurodevelopment

Alexandra Bokinsky, Evan S. McCreedy, Yicong Wu, 2015, Photonics West - Biomedical Optics.

AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis

Zhirong Bao, Carlos L. Araya, Thomas J. Boyle, 2006, BMC Bioinformatics.

WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration

Abhishek Kumar, Yicong Wu, Zhirong Bao, 2015, BMC Bioinformatics.

Cellular Structure Image Classification With Small Targeted Training Samples

Zi Wang, Dali Wang, Yichi Xu, 2019, IEEE Access.

Visualization of 3-Dimensional Vectors in a Dynamic Embryonic System—WormGUIDES

Eric T. Wang, Zi Wang, Dali Wang, 2017 .

Cell Neighbor Determination in the Metazoan Embryo System

Zi Wang, Husheng Li, Dali Wang, 2017, BCB.

Rapid image deconvolution and multiview fusion for optical microscopy

Huafeng Liu, Yicong Wu, Anthony Santella, 2020, Nature Biotechnology.

Chiral forces organize left-right patterning in C. elegans by uncoupling midline and anteroposterior axis.

Zhirong Bao, Christian Pohl, Z. Bao, 2010, Developmental cell.

Pack-MULE transposable elements mediate gene evolution in plants

Sean R. Eddy, Zhirong Bao, Ning Jiang, 2004, Nature.

Actomyosin-based Self-organization of cell internalization during C. elegans gastrulation

Anthony Santella, Zhirong Bao, Christian Pohl, 2012, BMC Biology.

Dual-view plane illumination microscopy for rapid and spatially isotropic imaging

Alexandra Bokinsky, William Gandler, Evan S. McCreedy, 2014, Nature Protocols.

Systematic quantification of developmental phenotypes at single-cell resolution during embryogenesis

Zhirong Bao, Zhuo Du, Julia L Moore, 2013, Development.

Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution.

Anthony Santella, Zhirong Bao, Hari Shroff, 2019, Journal of visualized experiments : JoVE.

An active DNA transposon family in rice

Sean R. Eddy, Zhirong Bao, Hirohiko Hirochika, 2003, Nature.

The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree

John Isaac Murray, Zhirong Bao, R. Waterston, 2006, Nature Protocols.

Comparative analysis of embryonic cell lineage between Caenorhabditis briggsae and Caenorhabditis elegans.

Zhirong Bao, Zhongying Zhao, R. Waterston, 2008, Developmental biology.

E3 ubiquitin ligases promote progression of differentiation during C. elegans embryogenesis.

Zhirong Bao, Zhuo Du, Fei He, 2015, Developmental biology.

An In Toto Approach to Dissecting Cellular Interactions in Complex Tissues.

Anthony Santella, Zhirong Bao, Adrian Jacobo, 2017, Developmental cell.

Untwisting the Caenorhabditis elegans embryo

Huafeng Liu, Abhishek Kumar, Alexandra Bokinsky, 2015, eLife.

Specific corrosion product on interior surface of a bronze wine vessel with loop-handle and its growth mechanism, Shang Dynasty, China

Taotao Wu, Zhirong Bao, Chunxu Pan, 2012 .

An Observation-Driven Agent-Based Modeling and Analysis Framework for C. elegans Embryogenesis

Kwai Wong, Zhirong Bao, Husheng Li, 2016, PloS one.

Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy

Justin Senseney, Anthony Santella, Zhirong Bao, 2013, Nature Biotechnology.

Control of cell cycle timing during C. elegans embryogenesis.

Zhirong Bao, Zhongying Zhao, R. Waterston, 2008, Developmental biology.

Mounting Caenorhabditis elegans embryos for live imaging of embryogenesis.

Zhirong Bao, J. Murray, Z. Bao, 2011, Cold Spring Harbor protocols.

Using Stage- and Slit-Scanning to Improve Contrast and Optical Sectioning in Dual-View Inverted Light Sheet Microscopy (diSPIM)

Anthony Santella, Zhirong Bao, Hari Shroff, 2016, The Biological Bulletin.