P. Pompach

发表

Semi-automated identification of N-Glycopeptides by hydrophilic interaction chromatography, nano-reverse-phase LC-MS/MS, and glycan database search.

Radoslav Goldman, Nathan Edwards, N. Edwards, 2012, Journal of proteome research.

Fast Fluoroalkylation of Proteins Uncovers the Structure and Dynamics of Biological Macromolecules.

Z. Kukačka, P. Novák, J. Chmelík, 2021, Journal of the American Chemical Society.

Purification and characterization of a nitrilase from Fusarium solani O1

O. Benada, L. Fischer, V. Křen, 2008 .

Purification and characterization of a nitrilase from Aspergillus niger K10

M. Mackova, D. Kavan, V. Křen, 2006, Applied Microbiology and Biotechnology.

Analysis of tubulin alpha-1A/1B C-terminal tail post-translational poly-glutamylation reveals novel modification sites.

Ziad J. Sahab, S. Byers, L. Zhang, 2012, Journal of proteome research.

Planar Functionalized Surfaces for Direct Immunoaffinity Desorption/Ionization Mass Spectrometry.

J. Nováková, D. Kavan, M. Volný, 2016, Clinical chemistry.

The impact of individual human cytochrome P450 enzymes on oxidative metabolism of anticancer drug lenvatinib.

K. Vávrová, Z. Heger, P. Hodek, 2021, Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie.

VDAC2 and aldolase A identified as membrane proteins of K562 cells with increased expression under iron deprivation

J. Vohradský, J. Kovář, P. Man, 2008, Molecular and Cellular Biochemistry.

Identification of Multiple Substrates of the StkP Ser/Thr Protein Kinase in Streptococcus pneumoniae

L. Nováková, P. Branny, P. Pompach, 2010, Journal of bacteriology.

Mass spectrometry is a powerful tool for identification of proteins associated with lipid rafts of Jurkat T-cell line.

P. Novák, V. Havlíček, P. Man, 2004, Biochemical Society transactions.

LC‐MS3 quantification of O‐glycopeptides in human serum

R. Goldman, P. Pompach, J. Benicky, 2013, Electrophoresis.

Utilization of high-accuracy FTICR-MS data in protein quantitation experiments.

Martin Strohalm, D. Kavan, P. Novák, 2009, Journal of mass spectrometry : JMS.

Crystal structure of native β‐N‐acetylhexosaminidase isolated from Aspergillus oryzae sheds light onto its substrate specificity, high stability, and regulation by propeptide

Z. Otwinowski, J. Brynda, P. Man, 2018, The FEBS journal.

Protein Chips Compatible with MALDI Mass Spectrometry Prepared by Ambient Ion Landing.

P. Novák, O. Benada, P. Pompach, 2016, Analytical chemistry.

In-situ enrichment of phosphopeptides on MALDI plates modified by ambient ion landing.

Martin Strohalm, P. Novák, V. Obsilova, 2012, Journal of mass spectrometry : JMS.

Cross-Linking/Mass Spectrometry Uncovers Details of Insulin-Like Growth Factor Interaction With Insect Insulin Binding Protein Imp-L2

A. Brzozowski, J. Radosavljević, P. Pompach, 2019, Front. Endocrinol..

The α-galactosidase type A gene aglA from Aspergillus niger encodes a fully functional α-N-acetylgalactosaminidase.

V. Křen, R. Ettrich, P. Novák, 2010, Glycobiology.

Identification of Human Enzymes Oxidizing the Anti-Thyroid-Cancer Drug Vandetanib and Explanation of the High Efficiency of Cytochrome P450 3A4 in its Oxidation

V. Adam, V. Arlt, Václav Martínek, 2019, International journal of molecular sciences.

Identification of Enzymes Oxidizing the Tyrosine Kinase Inhibitor Cabozantinib: Cabozantinib Is Predominantly Oxidized by CYP3A4 and Its Oxidation Is Stimulated by cyt b5 Activity

K. Vávrová, Z. Heger, P. Hodek, 2020, Biomedicines.

Cytochrome P450 and flavin-containing monooxygenase enzymes are responsible for differential oxidation of the anti-thyroid-cancer drug vandetanib by human and rat hepatic microsomal systems.

V. Adam, V. Arlt, M. Stiborová, 2019, Environmental toxicology and pharmacology.

Dimerization of an immunoactivating peptide derived from mycobacterial hsp65 using N-hydroxysuccinimide based bifunctional reagents is critical for its antitumor properties.

B. Říhová, M. Šírová, P. Pompach, 2012, Bioconjugate chemistry.

Effective removal of nonionic detergents in protein mass spectrometry, hydrogen/deuterium exchange, and proteomics.

V. Havlíček, Martial Rey, P. Man, 2010, Analytical chemistry.

Soluble recombinant CD69 receptors optimized to have an exceptional physical and chemical stability display prolonged circulation and remain intact in the blood of mice

D. Kavan, L. Vannucci, J. Hudeček, 2008, The FEBS journal.

Sequencing, cloning and high-yield expression of a fungal β-N-acetylhexosaminidase in Pichia pastoris.

Kristýna Slámová, V. Křen, Vladimír Křen, 2012, Protein expression and purification.

Synthetic N-acetyl-D-glucosamine based fully branched tetrasaccharide, a mimetic of the endogenous ligand for CD69, activates CD69+ killer lymphocytes upon dimerization via a hydrophilic flexible linker.

D. Kavan, V. Křen, V. Sklenar, 2010, Journal of medicinal chemistry.

Modifications in the glycerophospholipid composition between the Coxiella burnetii phase I and phase II cells suggest an association with phase variation of the bacterium.

P. Pompach, L. Skultéty, R. Toman, 2016, Acta virologica.

The Isoforms of Rat Natural Killer Cell Receptor NKR-P1 Display a Distinct Binding of Complex Saccharide Ligands

V. Havlíček, R. Ettrich, P. Man, 2004 .

Production of recombinant soluble dimeric C-type lectin-like receptors of rat natural killer cells

D. Kavan, Petra Celadova, V. Kopecký, 2019, Scientific Reports.

Molecular architecture of mouse activating NKR-P1 receptors.

Jan Dohnálek, Tereza Skálová, Petr Kolenko, 2011, Journal of structural biology.

Modified electrophoretic and digestion conditions allow a simplified mass spectrometric evaluation of disulfide bonds.

D. Kavan, V. Havlíček, P. Man, 2009, Journal of mass spectrometry : JMS.

Enzymatic characterization and molecular modeling of an evolutionarily interesting fungal β‐N‐acetylhexosaminidase

Ondřej Vaněk, Zdeněk Kukačka, Natallia Kulik, 2011, The FEBS journal.

Lymphocyte activation receptors: new structural paradigms in group V of C-type animal lectins.

D. Kavan, P. Novák, P. Pompach, 2004, Biochemical Society transactions.

A chemoenzymatic route to mannosamine derivatives bearing different N-acyl groups.

D. Kavan, V. Křen, P. Pompach, 2005, Journal of biotechnology.

Interlaboratory Study on Differential Analysis of Protein Glycosylation by Mass Spectrometry: The ABRF Glycoprotein Research Multi-Institutional Study 2012*

Haixu Tang, Daniel Kolarich, Wolfgang Jabs, 2013, Molecular & Cellular Proteomics.

Preferred β-lactone synthesis can explain high rate of false-negative results in the detection of OXA-48-like carbapenemases

J. Hrabák, P. Pompach, V. Študentová, 2022, Scientific reports.

Heat Shock-Induced Accumulation of Translation Elongation and Termination Factors Precedes Assembly of Stress Granules in S. cerevisiae

P. Ivanov, J. Hasek, I. Frýdlová, 2013, PloS one.

High-throughput workflow for identification of phosphorylated peptides by LC-MALDI-TOF/TOF-MS coupled to in situ enrichment on MALDI plates functionalized by ion landing.

V. Havlíček, R. Hynek, P. Pompach, 2015, Journal of mass spectrometry : JMS.

Supplementary Information

F. Range, D. Kavan, Petra Celadova, 2014, States at War, Volume 2.

Dynamic secretome of Trichomonas vaginalis: Case study of β-amylases*

J. Tachezy, I. Hrdý, P. Rada, 2017, Molecular & Cellular Proteomics.

Quantification of Fucosylated Hemopexin and Complement Factor H in Plasma of Patients with Liver Disease

Radoslav Goldman, R. Goldman, P. Pompach, 2014, Analytical chemistry.

Quantitative Liquid Chromatography-Mass Spectrometry-Multiple Reaction Monitoring (LC-MS-MRM) Analysis of Site-specific Glycoforms of Haptoglobin in Liver Disease*

K. Makambi, R. Goldman, P. Pompach, 2013, Molecular & Cellular Proteomics.

Structure of the dimeric N-glycosylated form of fungal β-N-acetylhexosaminidase revealed by computer modeling, vibrational spectroscopy, and biochemical studies

Michal Kutý, Rüdiger Ettrich, Petr Novák, 2007, BMC Structural Biology.

Detection and Quantification of Carbohydrate-Deficient Transferrin by MALDI-Compatible Protein Chips Prepared by Ambient Ion Soft Landing.

R. Kučera, O. Topolcan, E. Navrátilová, 2018, Clinical chemistry.

Down-regulation of Protein-tyrosine Phosphatases Activates an Immune Receptor in the Absence of Its Translocation into Lipid Rafts*

P. Heneberg, P. Pompach, P. Dráber, 2010, The Journal of Biological Chemistry.

Site-specific Glycoforms of Haptoglobin in Liver Cirrhosis and Hepatocellular Carcinoma*

N. Edwards, R. Goldman, P. Pompach, 2013, Molecular & Cellular Proteomics.

Three-Dimensional Printed Target Plates for Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry.

D. Kavan, J. Hrabák, P. Pompach, 2020, Analytical chemistry.

Large propeptides of fungal beta-N-acetylhexosaminidases are novel enzyme regulators that must be intracellularly processed to control activity, dimerization, and secretion into the extracellular environment.

Daniel Kavan, Petr Novák, D. Kavan, 2007, Biochemistry.

Erratum to: Purification and characterization of a nitrilase from Aspergillus niger K10

M. Mackova, D. Kavan, V. Křen, 2013, Applied Microbiology and Biotechnology.

An integrative structural biology analysis of von Willebrand factor binding and processing by ADAMTS-13 in solution.

J. Enghild, P. Bernadó, A. Sagar, 2021, Journal of molecular biology.

Cryo-EM structures of Trypanosoma brucei gambiense ISG65 with human complement C3 and C3b and their roles in alternative pathway restriction

M. Hubálek, F. Zahedifard, S. Kereïche, 2023, Nature communications.

Characterization of the interaction between the tumour suppressor p53 and heme and its role in the protein conformational dynamics studied by various spectroscopic techniques and hydrogen/deuterium exchange coupled with mass spectrometry.

Toru Shimizu, D. Savchenko, M. Martínková, 2023, Journal of inorganic biochemistry.

Changes in the expression of N- and O-glycopeptides in patients with colorectal cancer and hepatocellular carcinoma quantified by full-MS scan FT-ICR and multiple reaction monitoring.

R. Kučera, O. Topolcan, R. Goldman, 2017, Journal of proteomics.

Protein and Site Specificity of Fucosylation in Liver-Secreted Glycoproteins

D. Ashline, R. Goldman, P. Pompach, 2014, Journal of proteome research.

On the mechanism of calcium‐dependent activation of NADPH oxidase 5 (NOX5)

A. Pastore, A. Mattevi, F. Magnani, 2019, The FEBS journal.

Exploring site-specific N-glycosylation microheterogeneity of haptoglobin using glycopeptide CID tandem mass spectra and glycan database search.

Radoslav Goldman, Nathan Edwards, N. Edwards, 2013, Journal of proteome research.

The rapid detection of procalcitonin in septic serum using immunoaffinity MALDI chips

M. Matějovič, J. Hrabák, P. Pompach, 2023, Clinical Proteomics.

N-glycosylated catalytic unit meets O-glycosylated propeptide: complex protein architecture in a fungal hexosaminidase.

V Kren, V. Havlíček, V. Křen, 2004, Biochemical Society transactions.

Interlaboratory Study on Differential Analysis of Protein Glycosylation by Mass Spectrometry: The ABRF Glycoprotein Research Multi-Institutional Study 2012*

Carthene R. Bazemore-Walker, Paula J. Griffin, H. Desaire, 2013, Molecular & Cellular Proteomics.

D. Kavan, V. Křen, V. Sklenar, 2010, Journal of medicinal chemistry.

Fragmentation of Human Erythrocyte Actin following Exposure to Hypoxia

G. Antonutto, P. Pompach, K. Bezouška, 2009, Acta Haematologica.