D. Simone

发表

The reference human nuclear mitochondrial sequences compilation validated and implemented on the UCSC genome browser

Marcella Attimonelli, Domenico Simone, Francesco Maria Calabrese, 2011, BMC Genomics.

Statistical Analysis of Community RNA Transcripts between Organic Carbon and Geogas-Fed Continental Deep Biosphere Groundwaters

S. Bertilsson, M. Dopson, Elias Broman, 2019, mBio.

Microbial Community and Metabolic Activity in Thiocyanate Degrading Low Temperature Microbial Fuel Cells

M. Dopson, T. Sleutels, D. Lundin, 2018, Front. Microbiol..

Diversity and Evolution of Bacterial Twin Arginine Translocase Protein, TatC, Reveals a Protein Secretion System That Is Evolving to Fit Its Environmental Niche

Denice C. Bay, R. Turner, D. Simone, 2013, PloS one.

Metatranscriptomes Reveal That All Three Domains of Life Are Active but Are Dominated by Bacteria in the Fennoscandian Crystalline Granitic Continental Deep Biosphere

K. Holmfeldt, S. Bertilsson, M. Dopson, 2018, mBio.

Toxigenic Genes, Pathogenic Potential and Antimicrobial Resistance of Bacillus cereus Group Isolated from Ice Cream and Characterized by Whole Genome Sequencing

D. Simone, G. Normanno, A. Parisi, 2022, Foods.

Intra-individual purifying selection on mitochondrial DNA variants during human oogenesis

L. Gianaroli, S. Vicario, S. De Fanti, 2017, Human reproduction.

Extraction and annotation of human mitochondrial genomes from 1000 Genomes Whole Exome Sequencing data

M. Attimonelli, C. Calabrese, G. Gasparre, 2014, BMC Genomics.

Salmonella enterica Subsp. houtenae Associated with an Abscess in Young Roe Deer (Capreolus capreolus)

S. Ciccarelli, D. Simone, A. Parisi, 2021, Pathogens.

MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing

Ernesto Picardi, Graziano Pesole, Marcella Attimonelli, 2014, Bioinform..

Primates and mouse NumtS in the UCSC Genome Browser

Marcella Attimonelli, Domenico Simone, Francesco Maria Calabrese, 2012, BMC Bioinformatics.

Searching for a needle in the haystack: comparing six methods to evaluate heteroplasmy in difficult sequence context.

Giovanni Romeo, Marcella Attimonelli, Domenico Simone, 2012, Biotechnology advances.

Polymorphic NumtS trace human population relationships

M. Attimonelli, D. Luiselli, M. Sazzini, 2011, Human Genetics.

The Fennoscandian Shield deep terrestrial virosphere suggests slow motion ‘boom and burst’ cycles

Anders F. Andersson, K. Holmfeldt, S. Bertilsson, 2021, Communications biology.

Energy efficiency and biological interactions define the core microbiome of deep oligotrophic groundwater

S. Bertilsson, M. Dopson, M. Lopez-Fernandez, 2020, Nature Communications.

Emerging Mutations Potentially Related to SARS-CoV-2 Immune Escape: The Case of a Long-Term Patient

D. Simone, A. Parisi, Loredana Capozzi, 2021, Life.

Analysis of metatranscriptomes from an acidophilic electricity generating community treating acidic mining wastewaters

M. Dopson, D. Simone, 2018 .

HmtDB, a genomic resource for mitochondrion-based human variability studies

Francesco Rubino, Marcella Attimonelli, Domenico Simone, 2011, Nucleic Acids Res..

Diagnosis of SARS-CoV-2 during the Pandemic by Multiplex RT-rPCR hCoV Test: Future Perspectives

A. Inchingolo, A. Patano, A. Inchingolo, 2022, Pathogens.

Ontogenic succession of thermokarst thaw ponds is linked to dissolved organic matter quality and microbial degradation potential

A. Eiler, S. Bertilsson, M. Rautio, 2020, Limnology and Oceanography.

HmtDB 2016: data update, a better performing query system and human mitochondrial DNA haplogroup predictor

Marcella Attimonelli, Domenico Simone, Gaetano Scioscia, 2016, Nucleic Acids Res..

Monkeypox Virus Infections in Southern Italy: Is There a Risk for Community Spread?

C. Foti, R. Prato, D. Martinelli, 2022, International journal of environmental research and public health.

Genomic Surveillance of Circulating SARS-CoV-2 in South East Italy: A One-Year Retrospective Genetic Study

G. Pesole, M. Notarnicola, D. Simone, 2021, Viruses.

Extraction and annotation of human mitochondrial genomes from 1000 Genomes Whole Exome Sequencing data

Marcella Attimonelli, Domenico Simone, Francesco Maria Calabrese, 2014, BMC Genomics.

Polymorphic NumtS trace human population relationships

M. Attimonelli, D. Luiselli, M. Sazzini, 2012, Human Genetics.

A Novel Inorganic Sulfur Compound Metabolizing Ferroplasma-Like Population Is Suggested to Mediate Extracellular Electron Transfer

M. Dopson, Xiaofen Wu, Elias Broman, 2018, Front. Microbiol..

Multi-locus sequence typing and in vitro antimicrobial resistance of equine Streptococcus equi subspecies zooepidemicus strains.

V. Iovane, D. Simone, L. De Martino, 2023, Veterinary research communications.

EasyCluster2: an improved tool for clustering and assembling long transcriptome reads

Ernesto Picardi, Graziano Pesole, Vitoantonio Bevilacqua, 2014, BMC Bioinformatics.