Ashish Agarwal

An approach to compare genome tiling microarray and MPSS sequencing data for transcript mapping

Mark Gerstein, Joel Rozowsky, Rajkumar Sasidharan, 2009, BMC Research Notes.

Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data.

Raymond K. Auerbach, Kevin Y Yip, Zhi John Lu, 2011, Genome research.

The CRIT framework for identifying cross patterns in systems biology and application to chemogenomics

Tara A Gianoulis, Mark B Gerstein, Michael Snyder, 2011, Genome Biology.

Genome-Wide Identification of Binding Sites Defines Distinct Functions for Caenorhabditis elegans PHA-4/FOXA in Development and Environmental Response

Raymond K. Auerbach, Mark Gerstein, Anthony A. Hyman, 2010, PLoS genetics.