Marianne Rooman

发表

Robustness Analysis of a Linear Dynamical Model of the Drosophila Gene Expression

Jaroslav Albert, Alexandre Haye, Marianne Rooman, 2010, CIBB.

SEPIa, a knowledge-driven algorithm for predicting conformational B-cell epitopes from the amino acid sequence

Georgios A. Dalkas, Marianne Rooman, M. Rooman, 2017, BMC Bioinformatics.

Predicting protein thermal stability changes upon point mutations using statistical potentials: Introducing HoTMuSiC

Marianne Rooman, Fabrizio Pucci, Raphaël Bourgeas, 2016, Scientific Reports.

Multilevel biological characterization of exomic variants at the protein level significantly improves the identification of their deleterious effects

Tom Lenaerts, Daniele Raimondi, Wim F. Vranken, 2016, Bioinform..

Generating and testing protein folds

Shoshana J. Wodak, Marianne Rooman, S. Wodak, 1993 .

DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins

Tom Lenaerts, Julien Ferté, Andrea Gazzo, 2017, Nucleic Acids Res..

Quantification of biases in predictions of protein stability changes upon mutations

Marianne Rooman, Fabrizio Pucci, Katrien V. Bernaerts, 2018, bioRxiv.

PoPMuSiC, rationally designing point mutations in protein structures

Marianne Rooman, Jean Marc Kwasigroch, Dimitri Gilis, 2002, Bioinform..

Prelude&Fugue, predicting local protein structure, early folding regions and structural weaknesses

Marianne Rooman, Jean Marc Kwasigroch, M. Rooman, 2006, Bioinform..

BeAtMuSiC: prediction of changes in protein–protein binding affinity on mutations

Marianne Rooman, Jean Marc Kwasigroch, Dimitri Gilis, 2013, Nucleic Acids Res..

Thermostability of Salt Bridges versus Hydrophobic Interactions in Proteins Probed by Statistical Potentials

Marianne Rooman, Yves Dehouck, Benjamin Folch, 2008, J. Chem. Inf. Model..

Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0

Philippe Bogaerts, Aline Grosfils, Marianne Rooman, 2009, Bioinform..

Prediction and interpretation of deleterious coding variants in terms of protein structural stability

Marianne Rooman, Fabrizio Pucci, François Ancien, 2018, Scientific Reports.

Protein Thermal Stability Engineering Using HoTMuSiC.

Marianne Rooman, Fabrizio Pucci, Jean Marc Kwasigroch, 2020, Methods in molecular biology.

Development of Novel Statistical Potentials Describing Cation-pi Interactions in Proteins and Comparison with Semiempirical and Quantum Chemistry Approaches

Marianne Rooman, Dimitri Gilis, Yves Dehouck, 2006, J. Chem. Inf. Model..

Gene expression model (in)validation by Fourier analysis

Marianne Rooman, Tomasz Konopka, M. Rooman, 2010, BMC Systems Biology.

Quantification of biases in predictions of protein stability changes upon mutations

Marianne Rooman, Fabrizio Pucci, Jean Marc Kwasigroch, 2018 .

Lexicon Visualization Library and JavaScript for Scientific Data Visualization

Julien Ferté, Ibrahim Tanyalcin, Carla Al Assaf, 2018, Computing in Science & Engineering.

Stability Curve Prediction of Homologous Proteins Using Temperature-Dependent Statistical Potentials

Marianne Rooman, Fabrizio Pucci, F. Pucci, 2014, PLoS Comput. Biol..

How robust is the genetic code against mistranslation errors

Serge Massar, Marianne Rooman, Dimitri Gilis, 2001 .

SCooP: an accurate and fast predictor of protein stability curves as a function of temperature

Marianne Rooman, Fabrizio Pucci, Jean Marc Kwasigroch, 2017, Bioinform..

8th Vienna International Conference on Mathematical Modelling, February 18 - 20, 2015

Marianne Rooman, Fabrizio Pucci, Katrien Bernaerts, 2015 .

SODa: An Mn/Fe superoxide dismutase prediction and design server

Marianne Rooman, Jean Marc Kwasigroch, Dimitri Gilis, 2008, BMC Bioinformatics.

Computer aided design of macromolecules and A.I. approaches

Shoshana J. Wodak, Marianne Rooman, Bruno Marchal, 1986 .

SOLart: a structure-based method to predict protein solubility and aggregation

Marianne Rooman, Fabrizio Pucci, Qingzhen Hou, 2020, Bioinform..

Modeling Delays in State Transition of a Bistable Genetic Switch under the Influence of Extrinsic Noise

Jaroslav Albert, Marianne Rooman, 2011, BIOINFORMATICS.

Identification of protein stability patches that pinpoint key structural or functional sites

Marianne Rooman, Dimitri Gilis, Yves Dehouck, 2012, BCB.

Protein Thermal Stability Engineering Using Hotmusic

Marianne Rooman, Fabrizio Pucci, Jean Marc Kwasigroch, 2019, bioRxiv.

AI challenges for predicting the impact of mutations on protein stability pdf

Marianne Rooman, Fabrizio Pucci, Martin Schwersensky, 2021, ArXiv.

Neural networks to predict protein stability changes upon mutation

Philippe Bogaerts, Aline Grosfils, Marianne Rooman, 2008 .

Knowledge Based Potentials for Predicting the Three-Dimensional Conformation of Proteins

Shoshana J. Wodak, Jean-Pierre A. Kocher, Marianne Rooman, 1994 .

Thermo- and mesostabilizing protein interactions identified by temperature-dependent statistical potentials.

Marianne Rooman, Yves Dehouck, Benjamin Folch, 2010, Biophysical journal.

High-quality thermodynamic data on the stability changes of proteins upon single-site mutations

Marianne Rooman, Fabrizio Pucci, Raphaël Bourgeas, 2016, bioRxiv.

A Comprehensive Computational Study of Amino Acid Interactions in Membrane Proteins

Marianne Rooman, Fabrizio Pucci, Qingzhen Hou, 2019 .

Physical and molecular bases of protein thermal stability and cold adaptation.

Marianne Rooman, Fabrizio Pucci, F. Pucci, 2017, Current opinion in structural biology.

Cation-pi/H-bond stair motifs at protein-DNA interfaces.

Marianne Rooman, René Wintjens, M. Rooman, 2002, Journal of molecular biology.

Robust non-linear differential equation models of gene expression evolution across Drosophila development

Jaroslav Albert, Alexandre Haye, Marianne Rooman, 2012, BMC Research Notes.

Basis set and electron correlation effects on ab initio calculations of cation-π/H-bond stair motifs

Marianne Rooman, Christophe Biot, René Wintjens, 2003 .

Prediction of stability changes upon single-site mutations using database-derived potentials

Marianne Rooman, Dimitri Gilis, 1999 .

Computational analysis of the amino acid interactions that promote or decrease protein solubility

Marianne Rooman, Fabrizio Pucci, Raphaël Bourgeas, 2018, Scientific Reports.

Symmetry principles in optimization problems: an application to protein stability prediction

Marianne Rooman, Fabrizio Pucci, Dimitri Gilis, 2015 .

Structural classification of αββ and ββα supersecondary structure units in proteins

Marianne Rooman, Andrey V. Kajava, M. Rooman, 1998 .

Stair motifs at protein-DNA interfaces: nonadditivity of H-bond, stacking, and cation-pi interactions.

Marianne Rooman, Christophe Biot, René Wintjens, 2004, Journal of the American Chemical Society.

Optimality of the genetic code with respect to protein stability and amino-acid frequencies

Serge Massar, Marianne Rooman, Dimitri Gilis, 2001, Genome Biology.

The first peptides: the evolutionary transition between prebiotic amino acids and early proteins.

Harry Buhrman, Serge Massar, Marianne Rooman, 2009, Journal of theoretical biology.

Protein Thermostability Prediction within Homologous Families Using Temperature-Dependent Statistical Potentials

Marianne Rooman, Fabrizio Pucci, Yves Dehouck, 2014, PloS one.

Dynamic modeling of gene expression in prokaryotes: application to glucose-lactose diauxie in Escherichia coli

Jaroslav Albert, Marianne Rooman, M. Rooman, 2011, Systems and Synthetic Biology.

Structure-based mutant stability predictions on proteins of unknown structure.

Marianne Rooman, Yves Dehouck, Giulia Gonnelli, 2012, Journal of biotechnology.

Flanking domain stability modulates the aggregation kinetics of a polyglutamine disease protein

Marianne Rooman, Amy L. Robertson, Dimitri Gilis, 2011, Protein science : a publication of the Protein Society.

Free-energy calculations of protein-ligand cation-pi and amino-pi interactions: from vacuum to proteinlike environments.

Marianne Rooman, Christophe Biot, M. Rooman, 2003, Journal of the American Chemical Society.

Improved Insights into Protein Thermal Stability: From the Molecular to the Structurome Scale

Marianne Rooman, Fabrizio Pucci, F. Pucci, 2016, bioRxiv.

Identification of short turn motifs in proteins using sequence and structure fingerprints

Shoshana J. Wodak, Marianne Rooman, René Wintjens, 1994 .

Design of modified proteins using knowledge-based approaches

Marianne Rooman, Dimitri Gilis, Yves Dehouck, 2012 .

Modeling the temporal evolution of the Drosophila gene expression from DNA microarray time series

Philippe Bogaerts, Alexandre Haye, Marianne Rooman, 2009, Physical biology.

Probability distributions for multimeric systems

Jaroslav Albert, Marianne Rooman, M. Rooman, 2015, Journal of Mathematical Biology.