Andre Lamurias

发表

LasigeBioTM at MEDIQA 2019: Biomedical Question Answering using Bidirectional Transformers and Named Entity Recognition

Francisco M. Couto, Andre Lamurias, 2019, BioNLP@ACL.

Identifying interactions between chemical entities in text

Andre Lamurias, Andre Lamurias, 2014 .

Generating Scientific Question Answering Corpora from Q&A forums

Francisco M. Couto, Andre Lamurias, Diana Sousa, 2020, ArXiv.

Semantic Similarity Definition

Francisco M. Couto, Andre Lamurias, Andre Lamurias, 2019, Encyclopedia of Bioinformatics and Computational Biology.

Biomedical Question Answering using Extreme Multi-Label Classification and Ontologies in the Multilingual Panorama

Francisco M. Couto, Andre Lamurias, Andre Neves, 2020, SIIRH@ECIR.

Identifying Human Phenotype Terms by Combining Machine Learning and Validation Rules

Francisco M. Couto, Andre Lamurias, Manuel Lobo, 2017, BioMed research international.

ULISBOA at SemEval-2016 Task 12: Extraction of temporal expressions, clinical events and relations using IBEnt

Francisco M. Couto, Joana Teixeira, Andre Lamurias, 2016, SemEval@NAACL-HLT.

Annotating biomedical ontology terms in electronic health records using crowd-sourcing

Francisco M. Couto, Vasco Pedro, Andre Lamurias, 2015, ICBO.

Improving accessibility and distinction between negative results in biomedical relation extraction

Andre Lamurias, Francisco M Couto, Diana Sousa, 2020, Genomics & informatics.

Extraction of Regulatory Events using Kernel-based Classifiers and Distant Supervision

Francisco M. Couto, Andre Lamurias, Luka A. Clarke, 2016, BioNLP.

Generating a Tolerogenic Cell Therapy Knowledge Graph from Literature

João D. Ferreira, Francisco M. Couto, Andre Lamurias, 2017, Front. Immunol..

Improving chemical entity recognition through h-index based semantic similarity

João D. Ferreira, Francisco M. Couto, Andre Lamurias, 2015, Journal of Cheminformatics.

BO-LSTM: classifying relations via long short-term memory networks along biomedical ontologies

Andre Lamurias, Diana Sousa, Francisco M Couto, 2018, bioRxiv.

Identifying interactions between chemical entities in biomedical text

João D. Ferreira, Francisco M. Couto, Andre Lamurias, 2014, J. Integr. Bioinform..

Text Mining for Bioinformatics Using Biomedical Literature

Francisco M. Couto, Andre Lamurias, Andre Lamurias, 2019, Encyclopedia of Bioinformatics and Computational Biology.

ULISBOA at SemEval-2017 Task 12: Extraction and classification of temporal expressions and events

Francisco M. Couto, Andre Lamurias, Diana Sousa, 2017, SemEval@ACL.

Using Neural Networks for Relation Extraction from Biomedical Literature

Francisco M. Couto, Andre Lamurias, Diana Sousa, 2019, Artificial Neural Networks, 3rd Edition.

MER: a shell script and annotation server for minimal named entity recognition and linking

Francisco M. Couto, Andre Lamurias, Andre Lamurias, 2018, Journal of Cheminformatics.

PPR-SSM: personalized PageRank and semantic similarity measures for entity linking

Francisco M. Couto, Andre Lamurias, Pedro Ruas, 2019, BMC Bioinformatics.

The CHEMDNER corpus of chemicals and drugs and its annotation principles

Zhiyong Lu, Karin M. Verspoor, Hongfang Liu, 2015, Journal of Cheminformatics.

COVID-19: A Semantic-Based Pipeline for Recommending Biomedical Entities

Francisco M. Couto, Márcia Barros, Andre Lamurias, 2020, NLP4COVID@EMNLP.

A Silver Standard Corpus of Human Phenotype-Gene Relations

Francisco M. Couto, Andre Lamurias, Diana Sousa, 2019, NAACL.

Chemical Named Entity Recognition: Improving Recall Using a Comprehensive List of Lexical Features

João D. Ferreira, Francisco M. Couto, Andre Lamurias, 2014, PACBB.

BO-LSTM: Classifying relations via long short-term memory networks along biomedical ontologies

Francisco M. Couto, Andre Lamurias, Luka A. Clarke, 2018 .

IICE: Web Tool for Automatic Identification of Chemical Entities and Interactions

Francisco M. Couto, Andre Lamurias, Luka A. Clarke, 2015, ECML/PKDD.

WS4A: a Biomedical Question and Answering System based on public Web Services and Ontologies pdf

Francisco M. Couto, Andre Lamurias, Miguel J. Rodrigues, 2016, ArXiv.

A hybrid approach toward biomedical relation extraction training corpora: combining distant supervision with crowdsourcing

Francisco M. Couto, Andre Lamurias, Francisco M Couto, 2020, Database J. Biol. Databases Curation.

LasigeBioTM Team at CLEF2020 ChEMU Evaluation Lab: Named Entity Recognition and Event extraction from chemical reactions described in patents using BioBERT NER and RE

Francisco M. Couto, Andre Lamurias, Pedro Ruas, 2020, CLEF.

Priberam Labs at the NTCIR-15 SHINRA2020-ML: Classification Task pdf

Afonso Mendes, Andre Lamurias, Ruben Cardoso, 2021, ArXiv.

Information Retrieval Using Machine Learning for Biomarker Curation in the Exposome-Explorer

Reza M. Salek, Francisco M. Couto, Vanessa Neveu, 2021, Frontiers in Research Metrics and Analytics.

Identifying interactions between chemical entities in biomedical text

Andre Lamurias, Francisco M Couto, João D Ferreira, 2014, Journal of integrative bioinformatics.

MER: a Minimal Named-Entity Recognition Tagger and Annotation Server

Francisco M. Couto, Andre Lamurias, Luis F. Campos, 2017 .