Simon Kasif

发表

A Probabilistic Framework for Memory-Based Reasoning

David W. Aha, Simon Kasif, Steven Salzberg, 1998, Artif. Intell..

Optimal parallel algorithms for quadtree problems

Simon Kasif, 1994 .

Artificial Tikkun Olam: AI Can Be Our Best Friend in Building an Open Human-Computer Society pdf

Simon Kasif, S. Kasif, 2020, ArXiv.

The Complexity of Finding Minimal Voronoi Covers with Applications to Machine Learning

Simon Kasif, David G. Heath, 1993, Comput. Geom..

The art of gene function prediction

Simon Kasif, T M Murali, Chang-Jiun Wu, 2006, Nature Biotechnology.

On the Parallel Complexity of Some Constraint Satisfaction Problems

Simon Kasif, S. Kasif, 1986, AAAI.

Not All Experimental Questions Are Created Equal: Accelerating Biological Data to Knowledge Transformation (BD2K) via Science Informatics, Active Learning and Artificial Intelligence

Richard J. Roberts, Simon Kasif, Martin Steffen, 2017, bioRxiv.

A Bayesian framework for combining gene predictions

Vladimir Pavlovic, Simon Kasif, Ashutosh Garg, 2002, Bioinform..

A Note on the Computational Complexity of Symmetric Connectionist Networks

Simon Kasif, Saibal Banerjee, S. Kasif, 1988 .

COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps

Richard J. Roberts, Simon Kasif, John Rachlin, 2015, Nucleic Acids Res..

Efficient Parallel Term Matching

Simon Kasif, Arthur L. Delcher, A. Delcher, 1988 .

An optimal procedure for gap closing in whole genome shotgun sequencing

Noga Alon, Lance Fortnow, Simon Kasif, 2001, RECOMB.

Computational methods in molecular biology

Simon Kasif, Steven L. Salzberg, David B. Searls, 1998 .

Local Consistency in Parallel Constraint Satisfaction Networks

Simon Kasif, Arthur L. Delcher, A. Delcher, 1994, Artif. Intell..

A System for Induction of Oblique Decision Trees

Simon Kasif, Steven Salzberg, Sreerama K. Murthy, 1994, J. Artif. Intell. Res..

Parallel solutions to constraint satisfaction problems (extended abstract)

Simon Kasif, S. Kasif, 1989, KR 1989.

Some results on the computational complexity of symmetric connectionist networks

Simon Kasif, Saibal Banerjee, Gregory F. Sullivan, 1993, Annals of Mathematics and Artificial Intelligence.

Learning Nested Concept Classes with Limited Storage

Simon Kasif, Steven Salzberg, Gregory F. Sullivan, 1991, IJCAI.

Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings

Jill P. Mesirov, Satoru Miyano, Simon Kasif, 2005, RECOMB.

Best-Case Results for Nearest-Neighbor Learning

Simon Kasif, Steven Salzberg, David G. Heath, 1995, IEEE Trans. Pattern Anal. Mach. Intell..

Hierarchical tree snipping: clustering guided by prior knowledge

Simon Kasif, Avraham A. Melkman, Dikla Dotan-Cohen, 2007, Bioinform..

Integration of relational and hierarchical network information for protein function prediction

Xiaoyu Jiang, Simon Kasif, Martin Steffen, 2008, BMC Bioinformatics.

Some Results on the Complexity of Exploiting Data Dependency in Parallel Logic Programs

Simon Kasif, Arthur L. Delcher, 1989, J. Log. Program..

GEMS: a web server for biclustering analysis of expression data

Simon Kasif, Chang-Jiun Wu, S. Kasif, 2005, Nucleic Acids Res..

Improved Decision-Making in Game Trees: Recovering from Pathology

Simon Kasif, Arthur L. Delcher, A. Delcher, 1992, AAAI.

Exploiting Algebraic Structure in Parallel State Space Search

Simon Kasif, Lewis Stiller, Jonathan Bright, 1994, AAAI.

RankGene: identification of diagnostic genes based on expression data

Vladimir Pavlovic, T. M. Murali, Yang Su, 2003, Bioinform..

Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction

Xiaoyu Jiang, Simon Kasif, Martin Steffen, 2008, 2008 IEEE International Conference on Bioinformatics and Biomedicine.

OC1: A Randomized Induction of Oblique Decision Trees

Simon Kasif, Steven Salzberg, Richard Beigel, 1993, AAAI.

A hough transform technique for subgraph isomorphism

Azriel Rosenfeld, Leslie J. Kitchen, Simon Kasif, 1983, Pattern Recognit. Lett..

Multi-Node Graphs: A Framework for Multiplexed Biological Assays

Noga Alon, Simon Kasif, John Rachlin, 2006, J. Comput. Biol..

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

Richard J. Roberts, Stanley Letovsky, Simon Kasif, 2010, Nucleic Acids Res..

Predicting protein function from protein/protein interaction data: a probabilistic approach

Stanley Letovsky, Simon Kasif, S. Kasif, 2003, ISMB.

Logic Programming on ZMOB: A Highly Parallel Machine

Simon Kasif, Jack Minker, Madhur Kohli, 1982, International Conference on Parallel Processing.

Datascope: Mining Biological Sequences

Simon Kasif, 1999 .

Modeling splice sites with Bayes networks

Simon Kasif, Ben Kao, Arthur L. Delcher, 2000, Bioinform..

Chapter 15 Modeling biological data and structure with probabilistic networks

Simon Kasif, Arthur L. Delcher, 1998 .

Parallel problem solving on ZMOB

Simon Kasif, Jack Minker, D. Cao, 1983 .

Learning a Hidden Matching

Noga Alon, Benny Sudakov, Simon Kasif, 2004, SIAM J. Comput..

Analysis of parallelism in logic programs. (volumes i and ii)

Simon Kasif, 1984 .

The MuPlex homepage

Simon Kasif, John Rachlin, Chunming Ding, 2011 .

Less is more: towards an optimal universal description of protein folds

Simon Kasif, Zhiping Weng, Joseph D. Szustakowski, 2005, ECCB/JBI.

PRISM - A Parallel Inference System for Problem Solving

Simon Kasif, Jack Minker, Madhur Kohli, 1983, Logic Programming Workshop.

Logarithmic-Time Updates and Queries in Probabilistic Networks pdf

Simon Kasif, Judea Pearl, Arthur L. Delcher, 1995, UAI.

The 1996 Fall Symposium Series

Eric Horvitz, Maja J. Matarić, Holly A. Yanco, 1997 .

Term matching on a mesh-connected array of processors

Simon Kasif, Arthur L. Delcher, 2005, Annals of Mathematics and Artificial Intelligence.

Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic Profiles

Simon Kasif, Bud Mishra, Samantha Kleinberg, 2008, 2008 IEEE International Conference on Bioinformatics and Biomedicine.

Seeing the forest for the trees: using the Gene Ontology to restructure hierarchical clustering

Simon Kasif, Avraham A. Melkman, Dikla Dotan-Cohen, 2009, Bioinform..

Towards a Constraint-Based Engineering Framework for Algorithm Design and Application

Simon Kasif, 1996, CSUR.

Probabilistic Prediction of Protein Secondary Structure Using Causal Networks (Extended Abstract)

Simon Kasif, William H. Hsu, Arthur L. Delcher, 1993, AAAI.

Pyramid linking is a special case of ISODATA

Azriel Rosenfeld, Simon Kasif, A. Rosenfeld, 1983, IEEE Transactions on Systems, Man, and Cybernetics.

Biological Process Linkage Networks

Simon Kasif, Avraham A. Melkman, Stan Letovsky, 2009, PloS one.

Identification of functional links between genes using phylogenetic profiles

Simon Kasif, Charles DeLisi, Jie Wu, 2003, Bioinform..

Efficient parallel term matching and anti-unification

Simon Kasif, Arthur L. Delcher, 2004, Journal of Automated Reasoning.

Complexity of Connectionist and Constraint-Satisfaction Networks

Simon Kasif, 1992 .

Predicting malaria interactome classifications from time-course transcriptomic data along the intraerythrocytic developmental cycle

Simon Kasif, Bud Mishra, Samantha Kleinberg, 2010, Artif. Intell. Medicine.

Control and data driven execution of logic programs: A comparison

Simon Kasif, 2005, International Journal of Parallel Programming.

Formula dissection: A parallel algorithm for constraint satisfaction

Simon Kasif, John H. Reif, Deepak D. Sherlekar, 2008, Comput. Math. Appl..

MuPlex: multi-objective multiplex PCR assay design

Simon Kasif, John Rachlin, Charles Cantor, 2005, Nucleic Acids Res..

Local Induction of Decision Trees: Towards Interactive Data Mining

Simon Kasif, Steven Salzberg, David L. Waltz, 1996, KDD.

The Intelligent Channel: A Scheme for Result Sharing in Logic Programs

Simon Kasif, Jack Minker, 1985, IJCAI.

Extracting Conserved Gene Expression Motifs from Gene Expression Data

T. M. Murali, Simon Kasif, S. Kasif, 2002, Pacific Symposium on Biocomputing.

Parallel Solutions to Constraint Satisfaction Problems

Simon Kasif, S. Kasif, 1989, KR.

Efficient Algorithms for Finding Multi-way Splits for Decision Trees

Simon Kasif, Steven Salzberg, Truxton Fulton, 1995, ICML.

Protein Secondary Structure Modelling with

Simon Kasif, William H. Hsu, Harry Goldberg, 1993 .

Logic Programming: A Parallel Approach

Norbert Eisinger, Simon Kasif, Jack Minker, 1982, ICLP.

On the Parallel Complexity of Discrete Relaxation in Constraint Satisfaction Networks

Simon Kasif, S. Kasif, 1990, Artif. Intell..

Context specific protein function prediction.

Simon Kasif, Naoki Nariai, S. Kasif, 2007, Genome informatics. International Conference on Genome Informatics.

Protein Secondary-Structure Modeling with Probabilistic Networks

Simon Kasif, William H. Hsu, Arthur L. Delcher, 1993, ISMB.

Towards a Constraint-Based Engineering Framework for Algorithm Design and Application

Simon Kasif, 1996, ACM Comput. Surv..

Multi-node graphs and their application to bioinformatics

Simon Kasif, John Rachlin, 2007 .

Modeling biological data and structure with probabilistic networks1 1* Research supported by NSF Grants IRI-9529227 and IRI-9616254. Both authors also hold appointments with the Department of Computer Science, Johns Hopkins University, Baltimore, MD 21218, USA.

Simon Kasif, Arthur L. Delcher, A. Delcher, 1998 .

Text Classification in USENET Newsgroups: A Progress Report

Eric Brill, Simon Kasif, Scott A. Weiss, 1996 .

Induction of Oblique Decision Trees

Simon Kasif, Steven Salzberg, David G. Heath, 1993, IJCAI.

Towards a Better Understanding of Memory-based Reasoning Systems

David W. Aha, Simon Kasif, Steven Salzberg, 1994, ICML.

Additional data file 10

Simon Kasif, Carol J. Bult, Isaac S. Kohane, 2008 .

Learning a hidden matching

Noga Alon, Benny Sudakov, Simon Kasif, 2002, The 43rd Annual IEEE Symposium on Foundations of Computer Science, 2002. Proceedings..

ON THE COMPLEXITY OF INCREMENTAL PARALLEL COMPUTATIONS IN ARTIFICIAL INTELLIGENCE.

Simon Kasif, Arthur L. Delcher, A. Delcher, 1987 .

topoSNP: a topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association

Simon Kasif, Jie Liang, Yan Yuan Tseng, 2004, Nucleic Acids Res..

On reasoning from data

Simon Kasif, David L. Waltz, S. Kasif, 1995, CSUR.

Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance

Peter J. Park, Simon Kasif, Isaac S. Kohane, 2009, Bioinform..

Phylogenetic detection of conserved gene clusters in microbial genomes

Yu Zheng, Richard J. Roberts, Simon Kasif, 2005, BMC Bioinformatics.

Learning with a Helpful Teacher

Simon Kasif, Steven Salzberg, David G. Heath, 1991, IJCAI.

Genomic functional annotation using co-evolution profiles of gene clusters

Simon Kasif, Richard J Roberts, S. Kasif, 2002, Genome Biology.

Microbial gene identification using interpolated Markov

Simon Kasif, Arthur L. Delcher, Owen White, 1998 .

Accelerated Postnatal Growth Increases Lipogenic Gene Expression and Adipocyte Size in Low–Birth Weight Mice

Simon Kasif, S. Kasif, Manway Liu, 2009, Diabetes.

To Supplement or Not to Supplement: A Metabolic Network Framework for Human Nutritional Supplements

Simon Kasif, S. Kasif, Christopher D. Nogiec, 2013, PloS one.

Objective: biochemical function

Richard J. Roberts, Simon Kasif, Brian P. Anton, 2014, Front. Genet..

Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori

Simon Kasif, Juan P. Albar, Rafael Bargiela, 2013, PloS one.

Genomewide Analysis of PRC1 and PRC2 Occupancy Identifies Two Classes of Bivalent Domains

Simon Kasif, Eric S. Lander, Bradley E. Bernstein, 2008, PLoS genetics.

Probabilistic Protein Function Prediction from Heterogeneous Genome-Wide Data

Simon Kasif, Eric D. Kolaczyk, Naoki Nariai, 2007, PloS one.

A comparative genomic method for computational identification of prokaryotic translation initiation sites.

Simon Kasif, Megon Walker, Vladimir Pavlovic, 2002, Nucleic acids research.

Induction of shallow decision trees

Dimitrios Gunopulos, Simon Kasif, Steven Salzberg, 2007 .

Reconstructing and Reprogramming the Tumor-Propagating Potential of Glioblastoma Stem-like Cells

Simon Kasif, Miguel N. Rivera, Aviv Regev, 2014, Cell.

Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease

Mihai Pop, Simon Kasif, Todd J. Treangen, 2012, PloS one.

Computational tradeoffs in multiplex PCR assay design for SNP genotyping

Simon Kasif, John Rachlin, Charles Cantor, 2005, BMC Genomics.

An aberrant transcription factor network essential for Wnt signaling and stem cell maintenance in glioblastoma.

Simon Kasif, Esther Rheinbay, Mohammad Shahid, 2013, Cell reports.

GC/AT-content spikes as genomic punctuation marks.

Simon Kasif, Charles R Cantor, S. Kasif, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Biochemical networks: the evolution of gene annotation.

Simon Kasif, Martin Steffen, S. Kasif, 2010, Nature chemical biology.

Thousands of missed genes found in bacterial genomes and their analysis with COMBREX

Henry Lin, Simon Kasif, Steven L Salzberg, 2012, Biology Direct.

Segmentally Variable Genes:A New Perspective on Adaptation

Simon Kasif, Richard J Roberts, S. Kasif, 2004, PLoS biology.

An Experimental Approach to Genome Annotation

Richard J. Roberts, Simon Kasif, Merry Buckley, 2004 .

Analysis of gene expression in a developmental context emphasizes distinct biological leitmotifs in human cancers

Simon Kasif, Carol J Bult, Isaac S Kohane, 2008, Genome Biology.

Quantitative Analysis of Single Nucleotide Polymorphisms within Copy Number Variation

Simon Kasif, Zhiping Weng, Charles R. Cantor, 2008, PloS one.

Metabolic modeling of muscle metabolism identifies key reactions linked to insulin resistance phenotypes

Simon Kasif, Jonathan M. Dreyfuss, S. Kasif, 2015, Molecular metabolism.

On the normalization of RNA equilibrium free energy to the length of the sequence.

Simon Kasif, S. Kasif, J. Graber, 2003, Nucleic acids research.

Biological context networks: a mosaic view of the interactome

Simon Kasif, John Rachlin, Charles Cantor, 2006, Molecular systems biology.

Human Centered Systems in the Perspective of Organizational and Social Informatics

Simon Kasif, Blaise Cronin, Ann Bishop, 2019 .