Yang Shen

Blind prediction of interfacial water positions in CAPRI

Kengo Kinoshita, Haruki Nakamura, Xiaoqin Zou, 2014, Proteins.

Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment

Daisuke Kihara, Keehyoung Joo, Daisuke Kuroda, 2016, Proteins.

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Jeffrey J. Gray, Panagiotis I. Koukos, Johnathan D. Guest, 2021, Proteins.

Protein Docking by the Underestimation of Free Energy Funnels in the Space of Encounter Complexes

Ioannis Ch. Paschalidis, Yang Shen, Sandor Vajda, 2008, PLoS Comput. Biol..

ClusPro: Performance in CAPRI rounds 6–11 and the new server

Stephen R Comeau, Dima Kozakov, Ryan Brenke, 2007, Proteins.

SDU: A Semidefinite Programming-Based Underestimation Method for Stochastic Global Optimization in Protein Docking

Ioannis Ch. Paschalidis, Yang Shen, Sandor Vajda, 2007, IEEE Transactions on Automatic Control.

Achieving reliability and high accuracy in automated protein docking: Cluspro, PIPER, SDU, and stability analysis in CAPRI rounds 13–19

Stephen R Comeau, Dima Kozakov, Ryan Brenke, 2010, Proteins.

A Semi-Definite programming-based Underestimation method for global optimization in molecular docking

Yang Shen, I.Ch. Paschalidis, S. Vajda, 2005, Proceedings of the 44th IEEE Conference on Decision and Control.

Blind prediction of interfacial water positions in CAPRI

Julie C. Mitchell, Jeffrey J. Gray, H. Wolfson, 2014, Proteins.

Protein-protein docking with reduced potentials by exploiting multi-dimensional energy funnels

Ioannis Ch. Paschalidis, Sandor Vajda, Pirooz Vakili, 2006, 2006 International Conference of the IEEE Engineering in Medicine and Biology Society.