A. Koh

Xiaowei Zhan, C. Arana, Yang Xie, 2017, Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation.

Analysis of acquisition of Pseudomonas aeruginosa gastrointestinal mucosal colonization and horizontal transmission in a murine model.

S. Lory, M. Gadjeva, G. Pier, 2010, The Journal of infectious diseases.

Rapid ultrasensitive detection platform for antimicrobial susceptibility testing

Erdal Toprak, Y. T. Tamer, A. Koh, 2019, PLoS biology.

Inactivation of the rhlA gene in Pseudomonas aeruginosa prevents rhamnolipid production, disabling the protection against polymorphonuclear leukocytes

G. Pier, T. Tolker-Nielsen, M. Givskov, 2009, APMIS : acta pathologica, microbiologica, et immunologica Scandinavica.

MB-SupCon: Microbiome-based predictive models via Supervised Contrastive Learning

Dajiang J. Liu, Bo Li, Xiaowei Zhan, 2022, bioRxiv.

Potential for Monitoring Gut Microbiota for Diagnosing Infections and Graft-versus-Host Disease in Cancer and Stem Cell Transplant Patients.

A. Koh, 2017, Clinical chemistry.

The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View

Fiona Ginty, Mark P. Styczynski, Ilya Shmulevich, 2020, Trends in cancer.

Dosing a synbiotic of human milk oligosaccharides and B. infantis leads to reversible engraftment in healthy adult microbiomes without antibiotics.

Steven Smriga, R. Jenq, A. Alousi, 2022, Cell host & microbe.

Collaboration between macrophages and vaccine-induced CD4+ T cells confers protection against lethal Pseudomonas aeruginosa pneumonia during neutropenia.

G. Pier, N. Van Rooijen, G. Priebe, 2013, The Journal of infectious diseases.

Inescapable Need for Neutrophils as Mediators of Cellular Innate Immunity to Acute Pseudomonas aeruginosa Pneumonia

G. Pier, N. Van Rooijen, G. Priebe, 2009, Infection and Immunity.

Activation of HIF-1α and LL-37 by commensal bacteria inhibits Candida albicans colonization

Xiaowei Zhan, Yang Xie, Minsoo Kim, 2015, Nature Medicine.

Identifying host immune effectors critical for protection against Candida albicans infections.

A. Koh, 2016, Virulence.

MetaPrism: A Toolkit for Joint Taxa/Gene Analysis of Metagenomic Sequencing Data

Dajiang J. Liu, Xiaowei Zhan, Guanghua Xiao, 2019, bioRxiv.

MAdCAM-1-Mediated Intestinal Lymphocyte Homing Is Critical for the Development of Active Experimental Autoimmune Encephalomyelitis

S. Haase, R. Linker, O. Stüve, 2019, Front. Immunol..

Tachygastria in Preterm Infants: A Longitudinal Cohort Study

J. Neu, D. Vasil, Jackson N. Cagle, 2022, Journal of pediatric gastroenterology and nutrition.

Empirical Oral Antibiotic Therapy for Low Risk Febrile Cancer Patients with Neutropenia

P. Pizzo, A. Koh, 2002, Cancer investigation.

Mucosal Damage and Neutropenia Are Required for Candida albicans Dissemination

G. Pier, J. Köhler, N. Van Rooijen, 2008, PLoS pathogens.

Precision editing of the gut microbiota ameliorates colitis

Andrew Y. Koh, E. Burstein, L. Hooper, 2018, Nature.

Candida albicans Isolates 529L and CHN1 Exhibit Stable Colonization of the Murine Gastrointestinal Tract

T. Hohl, Y. Taur, R. Bennett, 2021, bioRxiv.

Adaptation of Candida albicans During Gastrointestinal Tract Colonization

A. Koh, A. A. Mishra, 2018, Current Clinical Microbiology Reports.

Murine Models of Candida Gastrointestinal Colonization and Dissemination

A. Koh, 2013, Eukaryotic Cell.

Gastrointestinal Colonization of Fungi

A. Koh, 2013, Current Fungal Infection Reports.

Colonization and Dissemination Murine Models of Candida Gastrointestinal

A. Koh, 2013 .

The Microbiome and Hematopoietic Cell Transplantation: Past, Present, and Future.

W. Wood, P. Chiusolo, R. Storb, 2018, Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation.

Intravenous Pentamidine Is Safe and Effective as Primary Pneumocystis Pneumonia Prophylaxis in Children and Adolescents Undergoing Hematopoietic Stem Cell Transplantation

V. Aquino, A. Koh, J. Demasi, 2013, The Pediatric infectious disease journal.

Non-antibiotic Small-Molecule Regulation of DHFR-Based Destabilizing Domains In Vivo

Hui Peng, J. Hulleman, Erdal Toprak, 2019, Molecular therapy. Methods & clinical development.

A trimethoprim derivative impedes antibiotic resistance evolution

A. Atilgan, C. Atilgan, D. Borek, 2021, Nature Communications.

Candida albicans Inhibits Pseudomonas aeruginosa Virulence through Suppression of Pyochelin and Pyoverdine Biosynthesis

C. Reimmann, L. Hooper, I. Lamont, 2015, PLoS pathogens.

The microbiome in hematopoietic stem cell transplant recipients and cancer patients: Opportunities for clinical advances that reduce infection

A. Koh, 2017, PLoS pathogens.

Association between Antibiotic Exposure and Systemic Immune Parameters in Cancer Patients Receiving Checkpoint Inhibitor Therapy

D. Gerber, Quanzhen Li, E. Wakeland, 2022, Cancers.

Unbiased Microbiome and Metabolomic Profiling of Fecal Samples from Patients with Melanoma.

A. Frankel, A. Koh, Ashley Bui, 2021, Methods in molecular biology.

The complexities of bacterial-fungal interactions in the mammalian gastrointestinal tract

A. Koh, E. López-Medina, Eduardo Lopez-Medina, 2016, Microbial cell.

Severe Gut Microbiota Dysbiosis Is Associated With Poor Growth in Patients With Short Bowel Syndrome

Xiaowei Zhan, Yang Xie, Minsoo Kim, 2017, JPEN. Journal of parenteral and enteral nutrition.

MetaPrism: A versatile toolkit for joint taxa/gene analysis of metagenomic sequencing data

Dajiang J. Liu, Xiaowei Zhan, Guanghua Xiao, 2021, G3.

Susceptible bacteria survive antibiotic treatment in the mammalian gastrointestinal tract without evolving resistance

Xiaowei Zhan, L. Hooper, Erdal Toprak, 2023, bioRxiv.

Utility of In Vivo Transcription Profiling for Identifying Pseudomonas aeruginosa Genes Needed for Gastrointestinal Colonization and Dissemination

Stephen Lory, Andrew Y. Koh, Gerald B. Pier, 2010, PloS one.

FMAP: Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies

Xiaowei Zhan, Yang Xie, M. Kim, 2016, BMC Bioinformatics.

The gut microbiota in transplant patients.

A. Koh, P. Chong, Pearlie P Chong, 2020, Blood reviews.

Antibiotic-Induced Depletion of Anti-Inflammatory Clostridia is Associated with the Development of GVHD in Pediatric Stem Cell Transplant Patients.

Xiaowei Zhan, C. Arana, D. Greenberg, 2017 .

Cancer Immune Checkpoint Inhibitor Therapy and the Gut Microbiota

Brooks D. Rabideau, A. Frankel, S. McClellan, 2019, Integrative cancer therapies.

A Bayesian zero-inflated negative binomial regression model for the integrative analysis of microbiome data.

Xiaowei Zhan, Guanghua Xiao, Qiwei Li, 2018, Biostatistics.

Transcriptional profiling identifies caspase-1 as a T cell–intrinsic regulator of Th17 differentiation

E. Wakeland, Yajing Gao, I. Dozmorov, 2020, The Journal of experimental medicine.

Reduced anti-inflammatory gut microbiota are associated with depression and anhedonia.

M. Trivedi, Qiwei Li, A. Minhajuddin, 2020, Journal of affective disorders.

Immune checkpoint blockade induces gut microbiota translocation that augments extraintestinal antitumor immunity

Xiaowei Zhan, L. Hooper, C. Pasare, 2023, Science immunology.

The Impact of Lactobacillus Probiotics on the Gut Microbiota in Children With Short Bowel Syndrome.

Laura A. Coughlin, A. Koh, Hannah G Piper, 2020, The Journal of surgical research.

FMAP: Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies

Yang Xie, Xiaowei Zhan, Jiwoong Kim, 2016, BMC Bioinformatics.

HARMONIES: A Hybrid Approach for Microbiome Networks Inference via Exploiting Sparsity

Shuang Jiang, Guanghua Xiao, Bo Yao, 2020, bioRxiv.

The microbial and host factors that govern Candida gastrointestinal colonization and dissemination.

A. Koh, A. A. Mishra, 2021, Current opinion in microbiology.

Food for Gut: Microbiota Fuels Immune Reconstitution after BMT.

A. Koh, T. Simms-Waldrip, 2018, Cell host & microbe.

Immune checkpoint blockade induces gut microbiota translocation that augments extraintestinal anti-tumor immunity

Yajing Gao, L. Hooper, C. Pasare, 2022, bioRxiv.

The Antibiotic Efflux Protein TolC Is a Highly Evolvable Target under Colicin E1 or TLS Phage Selection

Erdal Toprak, Y. T. Tamer, I. Gaszek, 2021, Molecular biology and evolution.

The highly evolvable nature of the antibiotic efflux protein TolC limits use of phages and bacterial toxins as antibacterial agents

Erdal Toprak, Y. T. Tamer, I. Gaszek, 2020, bioRxiv.

RNA Isolation of Pseudomonas aeruginosa Colonizing the Murine Gastrointestinal Tract

G. Pier, A. Koh, E. López-Medina, 2011, Journal of visualized experiments : JoVE.

VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning

Yang Xie, Shuang Jiang, Xiaowei Zhan, 2019, bioRxiv.

Precision modulation of dysbiotic adult microbiomes with a human-milk-derived synbiotic reshapes gut microbial composition and metabolites.

Christine B. Peterson, R. Jenq, Aislinn D. Rowan-Nash, 2023, Cell host & microbe.