Shilai Zhang

发表

Neo-functionalization of a Teosinte branched 1 homologue mediates adaptations of upland rice

Weiming He, Wen Wang, Peng Zeng, 2020, Nature Communications.

Identification of Key Genes for the Ultrahigh Yield of Rice Using Dynamic Cross-tissue Network Analysis

Tao Zeng, Luonan Chen, Wen Wang, 2020, Genom. Proteom. Bioinform..

Supplementary Figures, Tables and Methods

Weiming He, Xin Li, Wen Wang, 2013 .

Evolution of Plant Architecture in Oryza Driven by the PROG1 Locus

Liyu Huang, Hui Liu, Ruoping Zhao, 2020, Frontiers in Plant Science.

Confirmation of a Gametophytic Self-Incompatibility in Oryza longistaminata

Liyu Huang, F. Hu, Shilai Zhang, 2021, Frontiers in Plant Science.

An innovated crop management scheme for perennial rice cropping system and its impacts on sustainable rice production

Liyu Huang, F. Hu, Shilai Zhang, 2021 .

Developing superior alleles of yield genes in rice by artificial mutagenesis using the CRISPR/Cas9 system

Liyu Huang, Ru Zhang, Yesheng Zhang, 2018, The Crop Journal.

A genomic perspective on the important genetic mechanisms of upland adaptation of rice

Weiming He, Xin Li, Wen Wang, 2014, BMC Plant Biology.

A Genetic Network Underlying Rhizome Development in Oryza longistaminata

Liyu Huang, F. Hu, Shilai Zhang, 2022, Frontiers in Plant Science.

Density-Dependent Fertilization of Nitrogen for Optimal Yield of Perennial Rice

Fengmin Li, F. Hu, Shilai Zhang, 2022, Agronomy.

N Balance and Requirements Under Different N Management Practices in a No-Till Perennial Rice Cropping System

F. Hu, Shilai Zhang, Guangfu Huang, 2021 .

An ABA Synthesis Enzyme Allele OsNCED2 Promotes the Aerobic Adaption in Upland Rice

Liyu Huang, Jun Lyu, B. Fu, 2020, bioRxiv.

Sustained productivity and agronomic potential of perennial rice

Jia Wen Liang, Liyu Huang, Jun Lyu, 2022, Nature Sustainability.

Regeneration pattern and genome-wide transcription profile of rhizome axillary buds after perennial rice harvest

Liyu Huang, S. Jiao, F. Hu, 2022, Frontiers in Plant Science.

Analysis of elite variety tag SNPs reveals an important allele in upland rice

Jun Wang, Jun Li, Weiming He, 2013, Nature Communications.

Differential transcriptome profiling of chilling stress response between shoots and rhizomes of Oryza longistaminata using RNA sequencing

Zhikang Li, Liyu Huang, Ting Zhang, 2017, PloS one.

The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice

Wen Wang, Liyu Huang, Ru Zhang, 2021, Rice.

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

Jun Wang, Ruibang Luo, Hui Xiang, 2012, BMC Genomics.

Soil microbial mechanisms promoting ultrahigh rice yield

Xin Li, Z. Shangguan, Ruoping Zhao, 2020, Soil Biology and Biochemistry.

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

Ruibang Luo, Hui Xiang, Jingde Zhu, 2012, BMC Genomics.

Decrease of gene expression diversity during domestication of animals and plants

Hui Xiang, Wen Wang, Z. Wang, 2019, BMC Evolutionary Biology.

Genome and Comparative Transcriptomics of African Wild Rice Oryza longistaminata Provide Insights into Molecular Mechanism of Rhizomatousness and Self-Incompatibility.

Yang Dong, Xin Li, Rod A Wing, 2015, Molecular plant.

Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore

Shanlin Liu, Wen Wang, Fan Liang, 2020, GigaScience.

Liyu Huang, F. Hu, Shilai Zhang, 2020, Plant Growth Regulation.

Genotype by environment interactions for performance of perennial rice genotypes (Oryza sativa L./Oryza longistaminata) relative to annual rice genotypes over regrowth cycles and locations in southern China

Liyu Huang, Shulin Liu, F. Hu, 2019, Field Crops Research.

Performance, Economics and Potential Impact of Perennial Rice PR23 Relative to Annual Rice Cultivars at Multiple Locations in Yunnan Province of China

Liyu Huang, F. Hu, Shilai Zhang, 2018 .

Genotype by environment interactions for grain yield of perennial rice derivatives (Oryza sativa L./Oryza longistaminata) in southern China and Laos

Liyu Huang, B. K. Samson, D. Tao, 2017 .

Genetic Diversity Analysis of Ancient Tea Plants in Xishuangbanna Area

Liyu Huang, Jinling Yang, Benying Liu, 2018 .

Construction of Whole Genome Fosmid Library in Africa Wild Rice ( Oryza longistaminata )

Jing Cai, F. Hu, Shilai Zhang, 2012 .

Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacbio Sequel II system and ultralong reads of Oxford Nanopore

Guanliang Meng, Shanlin Liu, Lingling Han, 2020, bioRxiv.

Decrease of gene expression diversity during domestication of animals and plants

Hui Xiang, Wen Wang, Z. Wang, 2019, BMC Evolutionary Biology.

Perennial rice improves farmer livelihood and ecosystem security

Jia Wen Liang, Liyu Huang, E. Sacks, 2022 .

Additional file 15

Ruibang Luo, Hui Xiang, Jingde Zhu, 2011 .

PERFORMANCE AND SURVIVAL OF PERENNIAL RICE DERIVATIVES (ORYZA SATIVA L./ORYZA LONGISTAMINATA) IN LAO PDR

T. Jackson, B. K. Samson, D. Tao, 2017, Experimental Agriculture.

Solving the mystery of Obake rice in Africa: population structure analyses of Oryza longistaminata reveal three genetic groups and evidence of both recent and ancient introgression with O. sativa

E. Sacks, R. Hamilton, D. Tao, 2023, Frontiers in Plant Science.

The ABA synthesis enzyme allele OsNCED2 promotes dryland adaptation in upland rice

Liyu Huang, B. Fu, F. Hu, 2024, The Crop Journal.

Spatiotemporal transcriptomic atlas of rhizome formation in Oryza longistaminata.

Sunil Kumar Sahu, Xuanmin Guang, Shilai Zhang, 2024, Plant biotechnology journal.

Additional file 10

Carmen Buchrieser, Philippe Glaser, Alfred Pühler, 2009 .