Yi Shi

发表

First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study

Karl Mechtler, Michael J MacCoss, Jürgen Cox, 2019, Analytical chemistry.

Integrative proteomics reveals exceptional diversity and versatility of mammalian humoral immunity

D. Schneidman-Duhovny, Jianquan Xu, Yang Liu, 2020, bioRxiv.

Integrative structure and function of the yeast exocyst complex

Sai J. Ganesan, Ilan E. Chemmama, B. Chait, 2020, Protein science : a publication of the Protein Society.

Versatile, Multivalent Nanobody Cocktails for Highly Efficient SARS-CoV-2 Neutralization

Yi Shi, 2020 .

Inhalable Nanobody (PiN-21) prevents and treats SARS-CoV-2 infections in Syrian hamsters at ultra-low doses

W. P. Duprex, Yi Shi, Yufei Xiang, 2021, Science Advances.

Chitinase-3-like-1 protein complexes modulate macrophage-mediated immune suppression in glioblastoma.

Qianghu Wang, C. Camacho, I. Pollack, 2021, The Journal of clinical investigation.

Chemical Cross-Linking and Mass Spectrometric Analysis of the Endogenous Yeast Exosome Complexes.

Yi Shi, Yufei Xiang, Zhuolun Shen, 2020, Methods in molecular biology.

Superimmunity by pan-sarbecovirus nanobodies

J. Tubiana, D. Schneidman-Duhovny, Derek J. Taylor, 2022, Cell Reports.

A robust and versatile nanobody platform for drug delivery

D. Schneidman-Duhovny, C. Camacho, Baoli Hu, 2020, bioRxiv.

Versatile and multivalent nanobodies efficiently neutralize SARS-CoV-2

D. Schneidman-Duhovny, W. P. Duprex, C. Zhang, 2020, Science.

Spt6 directly interacts with Cdc73 and is required for Paf1C recruitment to active genes

Yi Shi, Yufei Xiang, M. Ellison, 2022, bioRxiv.

Reduced B cell antigenicity of Omicron lowers host serologic response

H. Wolfson, J. Tubiana, D. Schneidman-Duhovny, 2022, Cell Reports.

Nanobodies: Robust Miniprotein Binders in Biomedicine.

Yi Shi, Yufei Xiang, Zhe Sang, 2023, Advanced drug delivery reviews.

The Magic of Linking Rings: Discovery of a Unique Photoinduced Fluorescent Protein Crosslink

A. Gronenborn, C. Schwieters, D. Toptygin, 2022, Journal of the American Chemical Society.

Ubiquitination-mediated degradation of TRDMT1 regulates homologous recombination and therapeutic response

L. Lan, Hong‐yu Li, Wei Yan, 2021, NAR cancer.

Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes

Anna K Belford, D. Schneidman-Duhovny, Wei Huang, 2021, Nature Communications.

Potent neutralizing monoclonal antibodies against Ebola virus infection

G. Gao, Linqi Zhang, X. Qiu, 2016, Scientific Reports.

A resource of high-quality and versatile nanobodies for drug delivery

D. Schneidman-Duhovny, Baoli Hu, Jiadi Luo, 2021, iScience.

Cryo-EM structure of the yeast TREX complex and coordination with the SR-like protein Gbp2

Yi Shi, Yihu Xie, Yi Ren, 2021, bioRxiv.

ROS-induced R loops trigger a transcription-coupled but BRCA1/2-independent homologous recombination pathway through CSB

S. Nakajima, Jianquan Xu, Yang Liu, 2018, Nature Communications.

FMRP promotes transcription-coupled homologous recombination via facilitating TET1-mediated m5C RNA modification demethylation

L. Zou, L. Lan, Yi Shi, 2022, Proceedings of the National Academy of Sciences of the United States of America.

Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines

Yi Shi, Karl Mechtler, Lan Huang, 2018 .

Inhalable Nanobody (PiN-21) prevents and treats SARS-CoV-2 infections in Syrian hamsters at ultra-low doses

W. P. Duprex, Yi Shi, Yufei Xiang, 2021, bioRxiv.

A novel framework to quantify uncertainty in peptide-tandem mass spectrum matches with application to nanobody peptide identification

Chris McKennan, Zhe Sang, Yi Shi, 2021, 2110.07818.

Impact of new variants on SARS-CoV-2 infectivity and neutralization: A molecular assessment of the alterations in the spike-host protein interactions

M. H. Cheng, I. Bahar, B. Kaynak, 2022, iScience.

Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting novel and conserved epitopes

Anna K Belford, D. Schneidman-Duhovny, Wei Huang, 2021, bioRxiv.

Versatile, Multivalent Nanobody Cocktails Efficiently Neutralize SARS-CoV-2

D. Schneidman-Duhovny, W. P. Duprex, Yi Shi, 2020, bioRxiv.

Reduced antigenicity of Omicron lowers host serologic response

H. Wolfson, J. Tubiana, D. Schneidman-Duhovny, 2022, bioRxiv.

Super-immunity by broadly protective nanobodies to sarbecoviruses

J. Tubiana, D. Schneidman-Duhovny, Wei Huang, 2021 .

Llamanade: an open-source computational pipeline for robust nanobody humanization

I. Bahar, Yi Shi, Yufei Xiang, 2021, bioRxiv.

Llamanade: an open-source computational pipeline for robust nanobody humanization

I. Bahar, Yi Shi, Yufei Xiang, 2021, bioRxiv.

Spt6 directly interacts with Cdc73 and is required for Paf1 complex occupancy at active genes in Saccharomyces cerevisiae

Yi Shi, Yufei Xiang, M. Ellison, 2023, Nucleic acids research.

ROS-induced R loops trigger a transcription-coupled but BRCA1/2-independent homologous recombination pathway through CSB

S. Nakajima, Jianquan Xu, Yang Liu, 2018, Nature Communications.

Integrative proteomics identifies thousands of distinct, multi-epitope, and high-affinity nanobodies.

D. Schneidman-Duhovny, Jianquan Xu, Yang Liu, 2021, Cell systems.

Nanobodies as a powerful platform for biomedicine.

Yi Shi, Zhe Sang, Zhuolun Shen, 2022, Trends in molecular medicine.