P. Simner

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Understanding the Promises and Hurdles of Metagenomic Next-Generation Sequencing as a Diagnostic Tool for Infectious Diseases

Karen C Carroll, Patricia J Simner, K. Carroll, 2017, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Multicenter Evaluation of the Accelerate PhenoTest BC Kit for Rapid Identification and Phenotypic Antimicrobial Susceptibility Testing Using Morphokinetic Cellular Analysis

Donna M. Wolk, Neelam Dhiman, Preeti Pancholi, 2018, Journal of Clinical Microbiology.

Activity of NXL104 in Combination with β-Lactams against Genetically Characterized Escherichia coli and Klebsiella pneumoniae Isolates Producing Class A Extended-Spectrum β-Lactamases and Class C β-Lactamases

J. Karlowsky, D. Hoban, P. Lagacé-Wiens, 2011, Antimicrobial Agents and Chemotherapy.

Antimicrobial Resistance in Urinary Tract Pathogens in Canada from 2007 to 2009: CANWARD Surveillance Study

Patricia J. Simner, J. Karlowsky, D. Hoban, 2011, Antimicrobial Agents and Chemotherapy.

Next-Generation Sequencing Approaches to Predicting Antimicrobial Susceptibility Testing Results

R. Yee, P. Simner, 2019, Advances in Molecular Pathology.

Cefiderocol Antimicrobial Susceptibility Testing Considerations: the Achilles' Heel of the Trojan Horse?

Robin Patel, P. Simner, 2020, Journal of Clinical Microbiology.

Development and validation of rapid use scope test strips to determine the efficacy of manual cleaning for flexible endoscope channels.

M. Alfa, P. Simner, N. Olson, 2012, American journal of infection control.

Evaluation of Five Chromogenic Agar Media and the Rosco Rapid Carb Screen Kit for Detection and Confirmation of Carbapenemase Production in Gram-Negative Bacilli

Pat DeGagne, Patricia J. Simner, M. Gilmour, 2014, Journal of Clinical Microbiology.

Combined selective culture and molecular methods for the detection of carbapenem-resistant organisms from fecal specimens

K. Carroll, P. Tamma, Y. Bergman, 2021, European Journal of Clinical Microbiology & Infectious Diseases.

Evaluation of the Direct MacConkey Method for Identification of Carbapenem-Resistant Gram-Negative Organisms from Rectal Swabs: Reevaluating Zone Diameter Cutoffs

K. Carroll, P. Tamma, K. Goodman, 2019, Journal of Clinical Microbiology.

Phenotypic Detection of Carbapenemase-Producing Organisms from Clinical Isolates

P. Tamma, P. Simner, 2018, Journal of Clinical Microbiology.

Comparison of 11 Phenotypic Assays for Accurate Detection of Carbapenemase-Producing Enterobacteriaceae

K. Carroll, P. Tamma, P. Simner, 2017, Journal of Clinical Microbiology.

Evaluation of Multiple Methods for Detection of Gastrointestinal Colonization of Carbapenem-Resistant Organisms from Rectal Swabs

K. Carroll, P. Tamma, A. Milstone, 2016, Journal of Clinical Microbiology.

Isolation of multiple carbapenemase-producing Gram-negative bacilli from a patient recently hospitalized in Nigeria.

M. Gilmour, M. Mulvey, J. Karlowsky, 2015, Diagnostic microbiology and infectious disease.

Comparison of a Novel, Rapid Chromogenic Biochemical Assay, the Carba NP Test, with the Modified Hodge Test for Detection of Carbapenemase-Producing Gram-Negative Bacilli

Robin Patel, J. Mandrekar, S. Vasoo, 2013, Journal of Clinical Microbiology.

A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor

M. Schatz, W. Timp, Y. Bergman, 2020, bioRxiv.

Geographic Variation of Infectious Disease Diagnoses Among Patients With Fever of Unknown Origin: A Systematic Review and Meta-analysis

K. Carroll, G. Yenokyan, P. Auwaerter, 2022, Open forum infectious diseases.

Performance evaluation of the BD SARS-CoV-2 reagents for the BD MAXâ¢ system

S. Young, P. Simner, E. McElvania, 2021, medRxiv.

Rapidly Growing Mycobacteria

N. Wengenack, P. Simner, Reeti Khare, 2015 .

Tenosynovitis Caused by a Novel Nontuberculous Mycobacterium Species Initially Misidentified as a Member of the Mycobacterium tuberculosis Complex

E. Hyle, R. Wallace,, J. Branda, 2014, Journal of Clinical Microbiology.

Combination of phage therapy and cefiderocol to successfully treat Pseudomonas aeruginosa cranial osteomyelitis

P. Tamma, Y. Bergman, Stephan Beisken, 2022, JAC-antimicrobial resistance.

The Brief Case: The Fly Who Cried Wohlf

S. Ray, P. Simner, Josh H. Gray, 2022, Journal of clinical microbiology.

Cefiderocol Activity Against Clinical Pseudomonas aeruginosa Isolates Exhibiting Ceftolozane-Tazobactam Resistance

Andreas E. Posch, S. Cosgrove, P. Tamma, 2021, Open forum infectious diseases.

Reporting Considerations for Cefepime-Susceptible and -Susceptible-Dose Dependent Results for Carbapenemase-Producing Enterobacterales

C. Burnham, P. Simner, M. Yarbrough, 2020, Journal of Clinical Microbiology.

Verification Is an Integral Part of Antimicrobial Susceptibility Test Quality Assurance

R. Humphries, P. Simner, 2020, Journal of Clinical Microbiology.

Tailoring Antimicrobial Susceptibility Testing to Individual Species of Coagulase-Negative Staphylococci: Next Up, Staphylococcus epidermidis

P. Simner, C. P. Morris, 2019, Journal of Clinical Microbiology.

EDTA-Modified Carbapenem Inactivation Method: a Phenotypic Method for Detecting Metallo-β-Lactamase-Producing Enterobacteriaceae

L. Westblade, S. Jenkins, J. K. Johnson, 2019, Journal of Clinical Microbiology.

Molecular Epidemiology of Ceftriaxone-Nonsusceptible Enterobacterales Isolates in an Academic Medical Center in the United States

P. Tamma, Tsigereda Tekle, S. Sharara, 2019, Open forum infectious diseases.

How frequently are hospitalized patients colonized with carbapenem-resistant Enterobacteriaceae (CRE) already on contact precautions for other indications?

S. Cosgrove, E. Klein, P. Tamma, 2018, Infection Control & Hospital Epidemiology.

Using Patient Risk Factors to Identify Whether Carbapenem-Resistant Enterobacteriaceae Infections Are Caused by Carbapenemase-Producing Organisms

K. Carroll, P. Tamma, A. Harris, 2018, Open forum infectious diseases.

Successful Treatment of Persistent Burkholderia cepacia Complex Bacteremia with Ceftazidime-Avibactam

W. Timp, P. Tamma, A. J. Hsu, 2018, Antimicrobial Agents and Chemotherapy.

Multicenter Evaluation of the Modified Carbapenem Inactivation Method and the Carba NP for Detection of Carbapenemase-Producing Pseudomonas aeruginosa and Acinetobacter baumannii

B. Limbago, L. Westblade, K. Anderson, 2017, Journal of Clinical Microbiology.

Mycobacterium and Aerobic Actinomycete Culture: Are Two Medium Types and Extended Incubation Times Necessary?

N. Wengenack, P. Simner, K. A. Doerr, 2016, Journal of Clinical Microbiology.

Identification of Mycobacterium Species and Mycobacterium tuberculosis Complex Resistance Determinants by Use of PCR-Electrospray Ionization Mass Spectrometry

J. Uhl, S. Buckwalter, N. Wengenack, 2013, Journal of Clinical Microbiology.

Phage display of environmental protein toxins and virulence factors reveals the prevalence, persistence, and genetics of antibody responses.

Priya D. Duggal, A. Mammen, I. Ruczinski, 2022, Immunity.

Performance Evaluation of the BD SARS-CoV-2 Reagents for the BD MAX System

Charles K. Cooper, S. Young, P. Simner, 2021, Journal of clinical microbiology.

Multicenter Clinical Validation of the Molecular BD Max Enteric Viral Panel for Detection of Enteric Pathogens

D. Pillai, P. Simner, K. Stellrecht, 2019, Journal of Clinical Microbiology.

Mycobacterium arupense Flexor Tenosynovitis: Case Report and Review of Antimicrobial Susceptibility Profiles for 40 Clinical Isolates

I. Sia, R. Wallace,, N. Wengenack, 2014, Journal of Clinical Microbiology.

Identification of infectious organisms in cytopathology: A review of ancillary diagnostic techniques

Derek B. Allison, Syed Z. Ali, P. Simner, 2018, Cancer cytopathology.

Combined comparative genomics and clinical modeling reveals plasmid-encoded genes are independently associated with Klebsiella infection

Ryan D. Crawford, E. Snitkin, P. Tamma, 2022, Nature Communications.

Molecular epidemiology of extended-spectrum β-lactamase-, AmpC β-lactamase- and carbapenemase-producing Escherichia coli and Klebsiella pneumoniae isolated from Canadian hospitals over a 5 year period: CANWARD 2007-11.

M. Mulvey, J. Pitout, J. Karlowsky, 2013, The Journal of antimicrobial chemotherapy.

Is Piperacillin-Tazobactam Effective for the Treatment of Pyelonephritis Caused by ESBL-producing Organisms?

S. Cosgrove, P. Tamma, S. Sharara, 2019, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Phenotypic Methods for Detection of Carbapenemase Production in Carbapenem-Resistant Organisms: What Method Should Your Laboratory Choose?

R. Yee, P. Simner, Meklit Workneh, 2019, Clinical Microbiology Newsletter.

Automated antimicrobial susceptibility testing and antimicrobial resistance genotyping using Illumina and Oxford Nanopore Technologies sequencing data among Enterobacteriaceae

P. Tamma, Y. Bergman, P. Májek, 2022, Frontiers in Microbiology.

The Prevalence and Molecular Epidemiology of Multidrug-Resistant Enterobacteriaceae Colonization in a Pediatric Intensive Care Unit

K. Carroll, P. Tamma, Tsigereda Tekle, 2016, Infection Control & Hospital Epidemiology.

Modifiable Risk Factors for the Emergence of Ceftolozane-Tazobactam Resistance.

Andreas E. Posch, S. Cosgrove, P. Tamma, 2020, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Metagenomic next-generation sequencing of rectal swabs for the surveillance of antimicrobial-resistant organisms on the Illumina Miseq and Oxford MinION platforms

W. Timp, P. Tamma, S. Hao, 2020, European Journal of Clinical Microbiology & Infectious Diseases.

Metagenomic next-generation sequencing of rectal swabs for the surveillance of antimicrobial-resistant organisms on the Illumina Miseq and Oxford MinION platforms

W. Timp, P. Tamma, S. Hao, 2020, European Journal of Clinical Microbiology & Infectious Diseases.

What’s New in Antibiograms? Updating CLSI M39 Guidance with Current Trends

J. Hindler, Sanchita Das, J. K. Johnson, 2022, Journal of clinical microbiology.

Comparing the analytical performance of three SARS-CoV-2 molecular diagnostic assays

K. Carroll, H. Mostafa, P. Simner, 2020, Journal of Clinical Virology.

Extended-spectrum β-lactamases: an update on their characteristics, epidemiology and detection

M. Castanheira, P. Bradford, P. Simner, 2021, JAC-antimicrobial resistance.

A Primer on AmpC Beta-Lactamases: Necessary Knowledge for an Increasingly Multidrug-Resistant World.

P. Tamma, R. Bonomo, Y. Doi, 2019, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Prevalence of extended-spectrum β-lactamase-producing Enterobacteriaceae with focus on the molecular characterization of ESBL- and AmpC β-lactamase- producing Escherichia coli isolated in Canadian hospitals from 2005-2009

P. Simner, 2011 .

Broad-Range Direct Detection and Identification of Fungi by Use of the PLEX-ID PCR-Electrospray Ionization Mass Spectrometry (ESI-MS) System

L. Hall, J. Uhl, S. Buckwalter, 2013, Journal of Clinical Microbiology.

Can Multidrug-Resistant Candidaauris Be Reliably Identified in Clinical Microbiology Laboratories?

K. Carroll, Sean X. Zhang, C. Hewitt, 2016, Journal of Clinical Microbiology.

Evaluation of Metagenomic and Targeted Next-Generation Sequencing Workflows for Detection of Respiratory Pathogens from Bronchoalveolar Lavage Fluid Specimens

E. Klein, K. Carroll, P. Simner, 2022, Journal of clinical microbiology.

Emergence and establishment of KPC-2-producing ST11 Klebsiella pneumoniae in a general hospital in Shanghai, China

Y. Liu, F. Chen, P. Tamma, 2017, European Journal of Clinical Microbiology & Infectious Diseases.

Prevalence of blaCTX-M Genes in Gram-Negative Bloodstream Isolates across 66 Hospitals in the United States

P. Tamma, P. Simner, Natalie N. Whitfield, 2021, Journal of Clinical Microbiology.

Infection control implications of heterogeneous resistance mechanisms in carbapenem-resistant Enterobacteriaceae (CRE)

P. Tamma, K. Goodman, A. Milstone, 2016, Expert review of anti-infective therapy.

Prevalence and characterization of extended-spectrum β-lactamase- and AmpC β-lactamase-producing Escherichia coli: results of the CANWARD 2007-2009 study.

M. Mulvey, J. Pitout, D. Hoban, 2011, Diagnostic microbiology and infectious disease.

Carbapenem-Resistant Non-Glucose-Fermenting Gram-Negative Bacilli: the Missing Piece to the Puzzle

K. Carroll, T. Gniadek, P. Simner, 2016, Journal of Clinical Microbiology.

A consensus conference to define the utility of advanced infectious disease diagnostics in solid organ transplant recipients

Sankha S. Basu, Deepali Kumar, K. Hanson, 2022, American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.

Next-Generation Sequencing in Clinical Microbiology: Are We There Yet?

Stephanie L Mitchell, Patricia J Simner, S. Mitchell, 2019, Clinics in laboratory medicine.

STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies

Andre Charlett, Sofia Morfopoulou, Denise M O'Sullivan, 2020, The Lancet Infectious Diseases.

Development and Optimization of Metagenomic Next-Generation Sequencing Methods for Cerebrospinal Fluid Diagnostics

S. Salzberg, K. Carroll, C. Eberhart, 2018, Journal of Clinical Microbiology.

Medical Parasitology Taxonomy Update: January 2012 to December 2015

P. Simner, 2016, Journal of Clinical Microbiology.

Recent Advances in Rapid Antimicrobial Susceptibility Testing Antimicrobial susceptibility testing

S. Orenga, A. Belkum, P. Simner, 2021 .

Mycobacterium: Laboratory Characteristics of Slowly Growing Mycobacteria*

R. Wallace,, N. Wengenack, E. Richter, 2011 .

Transmission and clearance of potential procarcinogenic bacteria during fecal microbiota transplantation for recurrent Clostridioides difficile.

Julia L. Drewes, W. Timp, C. Sears, 2019, JCI insight.

Multicenter Evaluation of the Acuitas AMR Gene Panel for Detection of an Extended Panel of Antimicrobial Resistance Genes among Bacterial Isolates

G. Walker, Y. Bergman, R. Yee, 2022, Journal of clinical microbiology.

STROBE-Metagenomics: A STROBE/STROME-ID Extension Statement to Guide the Reporting of Studies Applying Metagenomics

F. Balloux, A. Charlett, J. Breuer, 2020 .

Carbapenemase Detection among Carbapenem-Resistant Glucose-Nonfermenting Gram-Negative Bacilli

K. Carroll, P. Tamma, P. Simner, 2017, Journal of Clinical Microbiology.

Metagenomic Next-Generation Sequencing of Nasopharyngeal Specimens Collected from Confirmed and Suspect COVID-19 Patients

R. Colwell, K. Carroll, Y. Bergman, 2020, mBio.

Guillain-Barré Syndrome Outbreak in Peru 2019 Associated With Campylobacter jejuni Infection

S. Salzberg, D. Puiu, M. Grogl, 2021, Neurology: Neuroimmunology & Neuroinflammation.

The Human "Contaminome" and Understanding Infectious Disease.

S. Salzberg, P. Simner, 2022, The New England journal of medicine.

Progressive Development of Cefiderocol Resistance in Escherichia coli During Therapy Is Associated with Increased blaNDM-5 Copy Number and Gene Expression.

P. Tamma, Tsigereda Tekle, M. Ante, 2021, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Treatment of carbapenem-resistant Pseudomonas aeruginosa infections: a case for cefiderocol

R. Cantón, Y. Doi, P. Simner, 2022, Expert review of anti-infective therapy.

Evaluation of the NG-Test MCR-1 Lateral Flow Assay and EDTA-Colistin Broth Disk Elution Methods To Detect Plasmid-Mediated Colistin Resistance among Gram-Negative Bacterial Isolates

R. Humphries, Y. Bergman, R. Yee, 2020, Journal of Clinical Microbiology.

Multicenter Evaluation of Colistin Broth Disk Elution and Colistin Agar Test: a Report from the Clinical and Laboratory Standards Institute

R. Humphries, Y. Bergman, R. Yee, 2019, Journal of Clinical Microbiology.

Human Colon Cancer–Derived Clostridioides difficile Strains Drive Colonic Tumorigenesis in Mice

Cody N. Heiser, Julia L. Drewes, R. Coffey, 2022, Cancer discovery.

Modified Carbapenem Inactivation Method for Phenotypic Detection of Carbapenemase Production among Enterobacteriaceae

R. Thomson,, M. Ferraro, B. Limbago, 2017, Journal of Clinical Microbiology.

The Genotype-to-Phenotype Dilemma: How Should Laboratories Approach Discordant Susceptibility Results?

J. Dien Bard, R. Yee, P. Simner, 2021, Journal of Clinical Microbiology.

Comparing the Outcomes of Patients With Carbapenemase-Producing and Non-Carbapenemase-Producing Carbapenem-Resistant Enterobacteriaceae Bacteremia

P. Tamma, Tsigereda Tekle, A. Harris, 2017, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Antibiotic pressure on the acquisition and loss of antibiotic resistance genes in Klebsiella pneumoniae

M. Schatz, K. Carroll, W. Timp, 2018, The Journal of antimicrobial chemotherapy.

Prevalence, persistence, and genetics of antibody responses to protein toxins and virulence factors

A. Mammen, Uri Laserson, J. Round, 2021, bioRxiv.

Applying Rapid Whole-Genome Sequencing To Predict Phenotypic Antimicrobial Susceptibility Testing Results among Carbapenem-Resistant Klebsiella pneumoniae Clinical Isolates

Pranita D. Tamma, Michael C. Schatz, Geo Pertea, 2018, Antimicrobial Agents and Chemotherapy.

Analysis of 3789 in- and outpatient Escherichia coli isolates from across Canada--results of the CANWARD 2007-2009 study.

J. Karlowsky, D. Hoban, P. Lagacé-Wiens, 2011, Diagnostic microbiology and infectious disease.

Evaluation of NG-Test Carba 5 for Rapid Phenotypic Detection and Differentiation of Five Common Carbapenemase Families: Results of a Multicenter Clinical Evaluation

Meghan A. Wallace, C. Burnham, L. Westblade, 2020, Journal of Clinical Microbiology.

Multisite Evaluation of the BD Max Extended Enteric Bacterial Panel for Detection of Yersinia enterocolitica, Enterotoxigenic Escherichia coli, Vibrio, and Plesiomonas shigelloides from Stool Specimens

D. Pillai, R. Yogev, P. Simner, 2017, Journal of Clinical Microbiology.

Case Report and Genomic Analysis of Cefiderocol-Resistant Escherichia coli Clinical Isolates.

Shangxin Yang, O. Garner, P. Simner, 2021, American journal of clinical pathology.

What’s Special about Cefiderocol? A Micro-Comic Strip

A. McAdam, P. Simner, 2020, Journal of Clinical Microbiology.

Epidemiology of Vancomycin-Resistant Enterococci in Canadian Hospitals (CANWARD Study, 2007 to 2013)

M. Gilmour, J. Karlowsky, D. Hoban, 2015, Antimicrobial Agents and Chemotherapy.

Recent Advances in Rapid Antimicrobial Susceptibility Testing.

A. van Belkum, S. Orenga, P. Simner, 2021, Clinical chemistry.

Raising the Bar: Improving Antimicrobial Resistance Detection by Clinical Laboratories by Ensuring Use of Current Breakpoints

Rosemary C. She, Rhona J. Souers, R. Humphries, 2022, Open forum infectious diseases.

College of American Pathologists (CAP) Microbiology Committee Perspective: the Need for Verification Studies

R. Thomson,, B. Pritt, R. Humphries, 2020, Journal of Clinical Microbiology.

The Likelihood of Developing a Carbapenem-Resistant Enterobacteriaceae Infection during a Hospital Stay

P. Tamma, Y. Bergman, K. Goodman, 2019, Antimicrobial Agents and Chemotherapy.

Two-Site Evaluation of the Colistin Broth Disk Elution Test To Determine Colistin In Vitro Activity against Gram-Negative Bacilli

R. Humphries, J. Hindler, P. Tamma, 2018, Journal of Clinical Microbiology.

Multicenter Evaluation of an MIC-Based Aztreonam and Ceftazidime-Avibactam Broth Disk Elution Test

R. Humphries, Y. Bergman, E. Wenzler, 2023, Journal of clinical microbiology.

Cefiderocol Antimicrobial Susceptibility Testing against Multidrug-Resistant Gram-Negative Bacilli: a Comparison of Disk Diffusion to Broth Microdilution

P. Tamma, Y. Bergman, P. Simner, 2020, Journal of Clinical Microbiology.

A Novel Phenotypic Method To Screen for Plasmid-Mediated Colistin Resistance among Enterobacteriales

P. Tamma, Y. Bergman, P. Simner, 2019, Journal of Clinical Microbiology.

Defining Baseline Mechanisms of Cefiderocol Resistance in the Enterobacterales.

Andreas E. Posch, P. Tamma, M. Ante, 2021, Microbial drug resistance.

Evaluation of Calcium-Enhanced Media for Colistin Susceptibility Testing by Gradient Agar Diffusion and Broth Microdilution

R. Humphries, Stephania Stump, A. Uhlemann, 2019, Journal of Clinical Microbiology.

Successful Treatment of Persistent Stenotrophomonas maltophilia Bacteremia With Cefiderocol in an Infant

P. Tamma, Y. Bergman, A. Mathers, 2023, Open Forum Infectious Diseases.

Determining the Optimal Carbapenem MIC That Distinguishes Carbapenemase-Producing and Non-Carbapenemase-Producing Carbapenem-Resistant Enterobacteriaceae

P. Tamma, P. Simner, Belita N. A. Opene, 2016, Antimicrobial Agents and Chemotherapy.

Comparing the activity of novel antibiotic agents against carbapenem-resistant Enterobacterales clinical isolates

S. Cosgrove, P. Tamma, Y. Bergman, 2022, Infection Control & Hospital Epidemiology.

Is There a Carbapenem MIC Cutoff Value That Distinguishes Carbapenemase-Producing and Non-Carbapenemase-Producing Carbapenem Non-Susceptible Pseudomonas and Acinetobacter Isolates?

P. Tamma, P. Simner, Ruibin Wang, 2017, Infection Control & Hospital Epidemiology.

Risk Factors for Extended-Spectrum Beta-Lactamase-Producing Enterobacteriaceae Carriage Upon Pediatric Intensive Care Unit Admission

P. Tamma, Nuntra Suwantarat, David X. Li, 2017, Infection Control & Hospital Epidemiology.

Rapid identification from rectal swabs of the clinically most relevant carbapenemase genes from gram-negative bacteria using the BD MAX Check-Points CPO Assay.

Gina K. Thomson, N. Ledeboer, R. Cantón, 2021, Diagnostic microbiology and infectious disease.

Pan-drug resistant Providencia rettgeri contributing to a fatal case of COVID-19

Tsigereda Tekle, Y. Bergman, Matthew R. Geringer, 2021, Journal of medical microbiology.

Cefiderocol Treatment for Patients with Multidrug- and Carbapenem-Resistant Pseudomonas aeruginosa Infections in the Compassionate Use Program

P. Simner, Y. Yamano, S. Portsmouth, 2023, Antimicrobial agents and chemotherapy.

Detection of Penicillin Nonsusceptible Streptococcus agalactiae by Laboratories That Participate in the College of American Pathologist’s Proficiency Testing Program

R. Humphries, Jennifer Lu, P. Simner, 2023, Journal of clinical microbiology.

First Report of a Verona Integron-Encoded Metallo-β-Lactamase-Producing Klebsiella pneumoniae Infection in a Child in the United States.

K. Carroll, P. Tamma, R. Bonomo, 2016, Journal of the Pediatric Infectious Diseases Society.

Evaluation of Piperacillin-Tazobactam Testing against Enterobacterales by the Phoenix, MicroScan, and Vitek2 Tests Using Updated Clinical and Laboratory Standards Institute Breakpoints

R. Humphries, Tsigereda Tekle, A. Mathers, 2023, Journal of clinical microbiology.

Predicting probability of perirectal colonization with carbapenem-resistant Enterobacteriaceae (CRE) and other carbapenem-resistant organisms (CROs) at hospital unit admission

Matthew F. Toerper, S. Cosgrove, E. Klein, 2019, Infection Control & Hospital Epidemiology.

Detection and Identification of Yeasts from Formalin-Fixed, Paraffin-Embedded Tissue by Use of PCR-Electrospray Ionization Mass Spectrometry

B. Pritt, J. Uhl, S. Buckwalter, 2013, Journal of Clinical Microbiology.

Cefepime in vivo activity against carbapenem-resistant Enterobacterales that test as cefepime susceptible or susceptible-dose dependent in vitro: implications for clinical microbiology laboratory and clinicians.

D. Nicolau, P. Simner, Tomefa E. Asempa, 2023, The Journal of antimicrobial chemotherapy.

Next-Generation Sequencing Approaches to Predicting Antimicrobial Susceptibility Testing Results.

R. Yee, P. Simner, 2022, Clinics in laboratory medicine.

Progress Report: Next-Generation Sequencing (NGS), Multiplex Polymerase Chain Reaction (PCR), and Broad-Range Molecular Assays as Diagnostic Tools for Fever of Unknown Origin (FUO) Investigations in Adults.

K. Carroll, P. Auwaerter, P. Simner, 2021, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Which Trial Do We Need? Plasma Metagenomic Next-Generation Sequencing to Diagnose Infections in Patients with Hematological Malignancies and Febrile Neutropenia: Proposal for A Randomized-controlled Trial.

Steve Miller, A. Piantadosi, P. Simner, 2023, Clinical Microbiology and Infection.

Validation and Application of Long-Read Whole-Genome Sequencing for Antimicrobial Resistance Gene Detection and Antimicrobial Susceptibility Testing

P. Tamma, Y. Bergman, Thomas Weinmaier, 2022, Antimicrobial agents and chemotherapy.

Multicentre genetic diversity study of carbapenem-resistant Enterobacterales: predominance of untypeable pUVA-like blaKPC bearing plasmids

M. Schatz, K. Carroll, W. Timp, 2023, JAC-antimicrobial resistance.

An NDM-Producing Escherichia coli Clinical Isolate Exhibiting Resistance to Cefiderocol and the Combination of Ceftazidime-Avibactam and Aztreonam: Another Step Toward Pan-β-Lactam Resistance

P. Tamma, Tsigereda Tekle, Y. Bergman, 2023, Open forum infectious diseases.

Considerations from the College of American Pathologists for Implementation of an Assay for SARS-CoV-2 Testing after a Change in Regulatory Status

Rosemary C. She, R. Humphries, D. Peaper, 2021, Journal of clinical microbiology.

Modified Carbapenem Inactivation Method for Phenotypic Detection of Carbapenemase Production among Enterobacteriaceae

R. Thomson,, M. Ferraro, B. Limbago, 2017, Journal of Clinical Microbiology.

Medical Parasitology Taxonomy Update: January 2012 to December 2015

P. Simner, 2016, Journal of Clinical Microbiology.

Fluoroquinolone resistance in Escherichia coli isolated from patients attending Canadian hospitals is associated with the ST131 clone.

J. Karlowsky, D. Hoban, P. Lagacé-Wiens, 2011, Diagnostic microbiology and infectious disease.

A diagnostic stewardship approach to prevent unnecessary testing of an enteric bacterial molecular panel

P. Simner, Michael Gherna, Ann Hanlon, 2023, Microbiology spectrum.

REPORTing of Antimicrobial Resistance from Blood Cultures (REPORT-ABC), an ARLG Survey Summary: Resistance Marker Reporting Practices from Positive Blood Cultures.

Robin Patel, G. Yenokyan, L. Westblade, 2022, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Priorities and Progress in Diagnostic Research by the Antibacterial Resistance Leadership Group.

E. Tsalik, Ritu Banerjee, P. Simner, 2023, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Modeling Interventions and Contact Networks to Reduce the Spread of Carbapenem-Resistant Organisms Between Individuals in the ICU.

Matthew F. Toerper, J. Lessler, E. Klein, 2023, The Journal of hospital infection.

Multicenter Evaluation of the Modified Carbapenem Inactivation Method and the Carba NP for Detection of Carbapenemase-Producing Pseudomonas aeruginosa and Acinetobacter baumannii

B. Limbago, L. Westblade, K. Anderson, 2017, Journal of Clinical Microbiology.

Updating breakpoints in the United States: a summary from the ASM Clinical Microbiology Open 2022

R. Humphries, S. Naccache, P. Simner, 2023, Journal of clinical microbiology.

Multicenter Evaluation of the Accelerate PhenoTest BC Kit for Rapid Identification and Phenotypic Antimicrobial Susceptibility Testing Using Morphokinetic Cellular Analysis

R. Humphries, P. Pancholi, N. Ledeboer, 2018, Journal of Clinical Microbiology.