Patrick H. Duffy

Technical Brief: Mayo Clinic NLP System for Patient Smoking Status Identification

Christopher G. Chute, Guergana K. Savova, James D. Buntrock, 2008, J. Am. Medical Informatics Assoc..

VCF-Miner: GUI-based application for mining variants and annotations stored in VCF files

Steven N. Hart, Jean-Pierre A. Kocher, Patrick H. Duffy, 2015, Briefings Bioinform..

The Biological Reference Repository (BioR): a rapid and flexible system for genomics annotation

Steven N. Hart, Jean-Pierre A. Kocher, Patrick H. Duffy, 2014, Bioinform..

Domain-specific language models and lexicons for tagging

Christopher G. Chute, Serguei V. S. Pakhomov, Patrick H. Duffy, 2005, J. Biomed. Informatics.

TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data

Ying Li, Saurabh Baheti, Eric W. Klee, 2011, Bioinform..

High Throughput Modularized NLP System for Clinical Text

Serguei V. S. Pakhomov, James D. Buntrock, Patrick H. Duffy, 2005, ACL.

A high-throughput-sequence analysis infrastructure technology investigation framework for the evaluation of next-generation sequencing software

Patrick H. Duffy, Asha A. Nair, J. Kocher, 2011, Genome Biology.