J. Gardner

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Challenging a Paradigm: the Role of DNA Homology in Tyrosine Recombinase Reactions

L. Rajeev, K. Malanowska, J. Gardner, 2009, Microbiology and Molecular Biology Reviews.

Regulation of the threonine operon: tandem threonine and isoleucine codons in the control region and translational control of transcription termination.

J. Gardner, 1979, Proceedings of the National Academy of Sciences of the United States of America.

Conservation of structure and function among tyrosine recombinases: homology-based modeling of the lambda integrase core-binding domain.

R. Gumport, J. Gardner, B. M. Swalla, 2003, Nucleic acids research.

Specific Recognition of DNA by Integration Host Factor

E. Read, R. Gumport, J. Gardner, 2000, The Journal of Biological Chemistry.

Characterizing protein-nucleic acid interactions with challenge phages

Thomas E. Numrych, J. Gardner, T. E. Numrych, 1995 .

Determining the DNA sequence elements required for binding integration host factor to two different target sites

R. Gumport, J. Gardner, L. Hales, 1994, Journal of bacteriology.

Mutants of Escherichia coli integration host factor: DNA-binding and recombination properties.

R. Gumport, J. Gardner, L. Hales, 1994, Biochimie.

Integration host factor facilitates repression of the put operon in Salmonella typhimurium.

S. Maloy, J. Gardner, G. Deno, 1992, Gene.

The isolation and characterization of mutants of the integration host factor (IHF) of Escherichia coli with altered, expanded DNA‐binding specificities.

R. Gumport, E. C. Lee, J. Gardner, 1992, The EMBO journal.

A genetic analysis of Xis and FIS interactions with their binding sites in bacteriophage lambda

Thomas E. Numrych, R. Gumport, J. Gardner, 1991, Journal of bacteriology.

Genetic analysis of Escherichia coli integration host factor interactions with its bacteriophage lambda H' recognition site

R. Gumport, E. C. Lee, J. Gardner, 1991, Journal of bacteriology.

Role of Escherichia coli IHF protein in lambda site-specific recombination. A mutational analysis of binding sites.

H. Nash, J. Gardner, H. A. Nash, 1986, Journal of molecular biology.

Interactions between Integrase and Excisionase in the Phage Lambda Excisive Nucleoprotein Complex

R. Gumport, J. Gardner, E. H. Cho, 2002, Journal of bacteriology.

Interactions of NBU1 IntN1 and Orf2x Proteins with Attachment Site DNA

L. Rajeev, J. Gardner, Margaret M Wood, 2013, Journal of bacteriology.

CTnDOT Integrase Interactions with Attachment Site DNA and Control of Directionality of the Recombination Reaction

Jeanne M. Dichiara, J. Gardner, Margaret M Wood, 2010, Journal of bacteriology.

Purification and Characterization Of

R. Gumport, J. Gardner, Aras N. Mattis, 2022 .

Purification and Characterization of Bacteriophage P22 Xis Protein

R. Gumport, J. Gardner, Aras N. Mattis, 2008, Journal of bacteriology.

Characterization of the bacteriophage lambda excisionase (Xis) protein: the C‐terminus is required for Xis‐integrase cooperativity but not for DNA binding.

Thomas E. Numrych, R. Gumport, J. Gardner, 1992, The EMBO journal.

Mapping the functional domains of bacteriophage lambda integrase protein.

R. Gumport, J. Gardner, Y. Han, 1994, Journal of molecular biology.

Secondary-site attachment of coliphage lambda near the thr operon.

J. Gardner, O. Smith, W. Fredricks, 1974, Journal of molecular biology.

Specificity and kinetics defining the interaction between a murine monoclonal autoantibody and DNA.

E. Voss, D. Ballard, J. Gardner, 1984, The Journal of biological chemistry.

Evidence that the clindamycin-erythromycin resistance gene of Bacteroides plasmid pBF4 is on a transposable element

A. Salyers, N. Shoemaker, J. Gardner, 1985, Journal of Bacteriology.

Economics of the Family

P. Chiappori, P. Artursson, Y. Weiss, 2014, Nature.

The Xis2d protein of CTnDOT binds to the intergenic region between the mob and tra operons.

A. Salyers, J. Gardner, C. M. Hopp, 2015, Plasmid.

IntDOT Interactions with Core Sites during Integrative Recombination

J. Gardner, Sumiko Yoneji, Jennifer Laprise, 2013, Journal of bacteriology.

Interaction of the Gifsy-1 Xis Protein with the Gifsy-1 attP Sequence

J. Gardner, Asa Flanigan, 2007, Journal of bacteriology.

Conservation of structure and function among tyrosine recombinases: homology-based modeling of the lambda integrase core-binding domain.

R. Gumport, J. Gardner, B. M. Swalla, 2003, Nucleic acids research.

Homology-dependent interactions determine the order of strand exchange by IntDOT recombinase

J. Gardner, Sumiko Yoneji, Jennifer Laprise, 2009, Nucleic acids research.

Integration Site Selection by the Bacteroides Conjugative Transposon CTnBST

A. Salyers, N. Shoemaker, J. Gardner, 2007, Journal of bacteriology.

Use of randomly cloned DNA fragments for identification of Bacteroides thetaiotaomicron

A. Salyers, J. Gardner, S. P. Lynn, 1983, Journal of bacteriology.

Characterization of a conjugative transposon integrase, IntDOT

A. Salyers, K. Malanowska, J. Gardner, 2006, Molecular microbiology.

Site-Specific Recombination of Bacteriophage P22 Does Not Require Integration Host Factor

J. Gardner, E. H. Cho, Chan-Eun Nam, 1999, Journal of bacteriology.

Genetic analysis of second-site revertants of bacteriophage lambda integrase mutants

R. Gumport, Z. Wu, J. Gardner, 1997, Journal of bacteriology.

Genetic Analysis of the Bacteriophage λ attL Nucleoprotein Complex

R. Gumport, J. Gardner, M. MacWilliams, 1996 .

Regulation of site-speciﬁc recombination by the C-terminus of l integrase

A. Burgin, R. Gumport, R. Kazmierczak, 2022 .

Tn4351 transposes in Bacteroides spp. and mediates the integration of plasmid R751 into the Bacteroides chromosome

A. Salyers, N. Shoemaker, J. Gardner, 1986, Journal of bacteriology.

Contributions of RNA secondary structure and length of the thymidine tract to transcription termination at the thr operon attenuator.

J. Gardner, S. P. Lynn, L. M. Kasper, 1988, The Journal of biological chemistry.

Interactions of the excision proteins of CTnDOT in the attR intasome.

J. Gardner, Sumiko Yoneji, C. M. Hopp, 2013, Plasmid.

Use of P22 challenge phage to identify protein-nucleic acid binding sites

S. Maloy, J. Gardner, 1998 .

In vitro analysis of sequence requirements for the excision reaction of the Bacteroides conjugative transposon, CTnDOT

A. Salyers, Jeanne M. Dichiara, J. Gardner, 2005, Molecular microbiology.

A genetic enrichment for mutations constructed by oligodeoxynucleotide-directed mutagenesis.

R. Gumport, C. Bauer, J. Gardner, 1985, Gene.

Transcription termination in vitro by bacteriophage T7 RNA polymerase. The role of sequence elements within and surrounding a rho-independent transcription terminator.

R. Gumport, S. Jeng, J. Gardner, 1992, The Journal of biological chemistry.

Specificity of the attenuation response of the threonine operon of Escherichia coli is determined by the threonine and isoleucine codons in the leader transcript.

T. Donohue, R. Gumport, R. Gould, 1987, Journal of molecular biology.

Puriﬁcation and Characterization of Bacteriophage P22 Xis Protein (cid:1)

R. Gumport, J. Gardner, Aras N. Mattis, 2008 .

CTnDOT integrase performs ordered homology-dependent and homology-independent strand exchanges

A. Salyers, K. Malanowska, J. Gardner, 2007, Nucleic acids research.

BIOTIN SYNTHESIS IN BACILLUS SUBTILIS BY MIGLENA MANANDHAR DISSERTATION

J. Cronan, J. Imlay, J. Gardner, 2017 .

Some antibiotics formed by bacterium coli.

J. Gardner, 1950, British journal of experimental pathology.

Major Nucleoid Proteins in the Structure and Function of the Escherichia coli Chromosome

Reid C. Johnson, L. Johnson, J. Gardner, 2005 .

Transcription termination by bacteriophage T7 RNA polymerase at rho-independent terminators.

Richard I. Gumport, Jeffrey F. Gardner, R. Gumport, 1990, The Journal of biological chemistry.

Integration and Excision of aBacteroides Conjugative Transposon, CTnDOT

B. Paszkiet, A. Salyers, N. Shoemaker, 2000, Journal of bacteriology.

Dissecting nucleic acid-protein interactions using challenge phage.

S. Maloy, J. Gardner, 2007, Methods in enzymology.

Secondary lambda attachment site in the threonine operon attenuator of Escherichia coli

J. Gardner, J. Chapman, 1981, Journal of bacteriology.

The specific binding of Escherichia coli integration host factor involves both major and minor grooves of DNA.

R. Gumport, J. Gardner, R. Cosstick, 1995, Biochemistry.

Attenuation regulation in the thr operon of Escherichia coli K-12: molecular cloning and transcription of the controlling region

W. Reznikoff, J. Gardner, S. P. Lynn, 1982, Journal of bacteriology.

Extent of sequence homology required for bacteriophage lambda site-specific recombination.

R. Gumport, C. Bauer, J. Gardner, 1985, Journal of molecular biology.

The effect of attachment site mutations on strand exchange in bacteriophage lambda site-specific recombination.

R. Weisberg, R. Gumport, C. Bauer, 1989, Genetics.

Identification and characterization of mutants affecting transcription termination at the threonine operon attenuator.

C. Bauer, J. Gardner, S. P. Lynn, 1985, Journal of molecular biology.

Mutations in an integration host factor-binding site: effect on lambda site-specific recombination and regulatory implications

R. Gumport, A. Landy, J. Gardner, 1986, Journal of bacteriology.

Resolution of Mismatched Overlap Holliday Junction Intermediates by the Tyrosine Recombinase IntDOT

J. Gardner, Sumiko Yoneji, Kenneth Ringwald, 2017, Journal of bacteriology.

The N-terminus of IntDOT forms hydrophobic interactions during Holliday Junction resolution.

J. Gardner, A. Kolakowski, 2016, Plasmid.

The Integration and Excision of CTnDOT.

J. Gardner, Margaret M Wood, M. M. Wood, 2015, Microbiology spectrum.

Roles of Exc Protein and DNA Homology in the CTnDOT Excision Reaction

J. Gardner, Carolyn M. Keeton, 2012, Journal of bacteriology.

The Roles of Exc Protein and DNA Homology in the CTnDOT Excision Reaction 10 Running Title : CTnDOT Excision in vitro 11 12

J. Gardner, Carolyn M. Keeton, 2012 .

Resolution of Holliday Junction Recombination Intermediates by Wild-Type and Mutant IntDOT Proteins

J. Gardner, S. Kim, 2011, Journal of bacteriology.

The Bacteroides NBU1 Integrase Performs a Homology-independent Strand Exchange to Form a Holliday Junction Intermediate*

A. Segall, L. Rajeev, J. Gardner, 2007, Journal of Biological Chemistry.

Characterization of the integrase of NBU1, a Bacteroides mobilizable transposon

A. Salyers, L. Rajeev, J. Gardner, 2006, Molecular microbiology.

NBU1 integrase: evidence for an altered recombination mechanism

A. Salyers, L. Rajeev, J. Gardner, 2006, Molecular microbiology.

Defining the structural and functional roles of the carboxyl region of the bacteriophage lambda excisionase (Xis) protein.

R. Gumport, Z. Wu, J. Gardner, 1998, Journal of molecular biology.

Mutational analysis of integrase arm-type binding sites of bacteriophage lambda. Integration and excision involve distinct interactions of integrase with arm-type sites.

R. Gumport, C. Bauer, J. Gardner, 1986, Journal of molecular biology.

Attenuation in Bacterial Operons

C. Bauer, J. Gardner, S. P. Lynn, 1983 .

Isolation and footprint analysis of the Escherichia coli thr leader paused transcription complex.

M. T. Yang, J. Gardner, 1991, Nucleic acids research.

Examining the contribution of a dA+dT element to the conformation of Escherichia coli integration host factor-DNA complexes.

R. Gumport, J. Gardner, L. Hales, 1996, Nucleic acids research.

Analysis of Estrogen Response Element Binding by Genetically Selected Steroid Receptor DNA Binding Domain Mutants Exhibiting Altered Specificity and Enhanced Affinity*

B. Katzenellenbogen, E. Read, S. Chusacultanachai, 1999, The Journal of Biological Chemistry.

Development of an In Vitro Integration Assay for the Bacteroides Conjugative Transposon CTnDOT

A. Salyers, N. Shoemaker, J. Gardner, 2002, Journal of bacteriology.

A comparison of the effects of single-base and triple-base changes in the integrase arm-type binding sites on the site-specific recombination of bacteriophage lambda

Thomas E. Numrych, Richard I. Gumport, Jeffrey F. Gardner, 1990, Nucleic Acids Res..

RsaI: a new sequence-specific endonuclease activity from Rhodopseudomonas sphaeroides

S. Kaplan, J. Gardner, L. Cohen, 1980, Journal of bacteriology.

Characterization of a site-specific restriction endonuclease from Rhodopseudomonas sphaeroides

S. Kaplan, J. Gardner, L. Cohen, 1979, Journal of bacteriology.

The Bacteroides thetaiotaomicron Protein Bacteroides Host Factor A Participates in Integration of the Integrative Conjugative Element CTnDOT into the Chromosome

J. Gardner, Kenneth Ringwald, 2015, Journal of bacteriology.

Role of homology in site-specific recombination of bacteriophage lambda: evidence against joining of cohesive ends.

C. Bauer, H. Nash, J. Gardner, 1987, Proceedings of the National Academy of Sciences of the United States of America.

DNA interactions during bacteriophage λ site-specific recombination

R. Gumport, C. Bauer, J. Gardner, 1984 .

Transcription Termination at the thr Attenuator

J. Gardner, Ming-Te Yang, H. B. Scott, 1995, The Journal of Biological Chemistry.

Complementation of bacteriophage lambda integrase mutants: evidence for an intersubunit active site.

R. Gumport, J. Gardner, Y. Han, 1993, The EMBO journal.

Structure-Function Analysis of IntDOT

J. Gardner, B. M. Swalla, S. Kim, 2009, Journal of bacteriology.

Mutational Analysis and Homology-Based Modeling of the IntDOT Core-Binding Domain

A. Salyers, K. Malanowska, J. Gardner, 2009, Journal of bacteriology.

Regulation of site-specific recombination by the C-terminus of λ integrase

A. Burgin, R. Gumport, R. Kazmierczak, 2002 .

Initiation, pausing, and termination of transcription in the threonine operon regulatory region of Escherichia coli.

J. Gardner, 1982, The Journal of biological chemistry.

Identification and restriction endonuclease mapping of the threonine operon regulatory region.

W. Reznikoff, J. Gardner, 1978, Journal of molecular biology.

Direct genetic selection of two classes of R17/MS2 coat proteins with altered capsid assembly properties and expanded RNA-binding activities.

H. True, D. Fouts, D. Celander, 1997, Nucleic acids research.

Characterization of Exc, a novel protein required for the excision of Bacteroides conjugative transposon

A. Salyers, N. Shoemaker, J. Gardner, 2002, Molecular microbiology.

Interactions between Integrase and Excisionase in the Phage Lambda Excisive Nucleoprotein Complex

R. Gumport, J. Gardner, E. H. Cho, 2002, Journal of bacteriology.

Specificity determinants for bacteriophage Hong Kong 022 integrase: analysis of mutants with relaxed core‐binding specificities

J. Gardner, B. M. Swalla, Richard I. Gumport, 2000, Molecular microbiology.

Identification of genes required for excision of CTnDOT, a Bacteroides conjugative transposon

A. Salyers, N. Shoemaker, J. Gardner, 2001, Molecular microbiology.

Regulation of site-specific recombination by the C-terminus of lambda integrase.

A. Burgin, R. Gumport, R. Kazmierczak, 2002, Nucleic acids research.

The molecular basis of co‐operative DNA binding between lambda integrase and excisionase

R. Gumport, Jeffrey F Gardner, J. Gardner, 2003, Molecular microbiology.

Characterization of Bacteriophage Lambda Excisionase Mutants Defective in DNA Binding

R. Gumport, J. Gardner, E. H. Cho, 2000, Journal of bacteriology.

Genetic analysis of bacteriophage lambda integrase interactions with arm-type attachment site sequences

R. Gumport, J. Gardner, E. C. Lee, 1990, Journal of bacteriology.

Integration host factor: putting a twist on protein-DNA recognition.

Phoebe A Rice, Erik K Read, E. Read, 2003, Journal of molecular biology.

Regulation of Excision Genes of the Bacteroides Conjugative Transposon CTnDOT

A. Salyers, N. Shoemaker, J. Gardner, 2005, Journal of bacteriology.

Economics of the Family

P. Chiappori, P. Artursson, Y. Weiss, 2014, Nature.

Operator-promoter functions in the threonine operon of Escherichia coli

J. Gardner, O. Smith, 1975, Journal of Bacteriology.

Factors required in vitro for excision of the Bacteroides conjugative transposon, CTnDOT.

A. Salyers, Jeanne M. Dichiara, N. Shoemaker, 2004, Plasmid.

The excision proteins of CTnDOT positively regulate the transfer operon.

A. Salyers, N. Shoemaker, J. Gardner, 2013, Plasmid.

Transcriptional regulation of puc operon expression in Rhodobacter sphaeroides. Involvement of an integration host factor-binding sequence.

J. K. Lee, S. Kaplan, J. Gardner, 1993, The Journal of biological chemistry.

Structural Prediction and Mutational Analysis of the Gifsy-1 Xis Protein

J. Gardner, Asa Flanigan, 2008, BMC Microbiology.

An antibiotic produced by Staphylococcus aureus.

J. Gardner, 1949, British journal of experimental pathology.

IntDOT Interactions with Core- and Arm-Type Sites of the Conjugative Transposon CTnDOT

Jeanne M. Dichiara, J. Gardner, Aras N. Mattis, 2007, Journal of bacteriology.

Mutational analysis of protein binding sites involved in formation of the bacteriophage lambda attL complex

R. Gumport, J. Gardner, M. MacWilliams, 1997, Journal of bacteriology.

Selection of mutations altering specificity in restriction-modification enzymes using the bacteriophage P22 challenge-phage system.

R. Gumport, S. Jeng, J. Gardner, 1995, Gene.

A Genetic Analysis ofXisandFISInteractions withTheirBinding Sites inBacteriophage Lambda

Thomas E. Numrych, R. Gumport, J. Gardner, 1991 .