Fudong Li

发表

Structure and allosteric coupling of type Ⅱ antitoxin CopASO.

Xuecheng Zhang, Jiahai Zhang, Xiaoxue Wang, 2019, Biochemical and biophysical research communications.

Structural basis for human ZBTB7A action at the fetal globin promoter

K. Quinlan, Xiaodong Cheng, Yunyu Shi, 2021, Cell reports.

Structural analysis of Stc1 provides insights into the coupling of RNAi and chromatin modification

Jiahai Zhang, Jihui Wu, Yunyu Shi, 2013, Proceedings of the National Academy of Sciences.

Complex Structure of Pseudomonas aeruginosa Arginine Rhamnosyltransferase EarP with Its Acceptor Elongation Factor P

Yazhong Xiao, Hui Peng, Fudong Li, 2019, Journal of bacteriology.

A conserved dimer interface connects ERH and YTH family proteins to promote gene silencing

S. Grewal, Yunyu Shi, Tommy V. Vo, 2019, Nature Communications.

Structural basis for the recognition of kinesin family member 21A (KIF21A) by the ankyrin domains of KANK1 and KANK2 proteins

S. Liao, Chao Xu, Zhong-liang Zhu, 2017, The Journal of Biological Chemistry.

Structural insights into substrate selectivity of ribosomal RNA methyltransferase RlmCD

Q. Gong, Jihui Wu, Yunyu Shi, 2017, PloS one.

Zinc Finger Protein SALL4 Functions through an AT-Rich Motif to Regulate Gene Expression

Kol Jia Yong, Mahmoud A. Bassal, Hong Kee Tan, 2020, bioRxiv.

Structural basis for histone H3K4me3 recognition by the N-terminal domain of the PHD finger protein Spp1.

Yazhong Xiao, Fudong Li, Chao He, 2019, The Biochemical journal.

Structural Basis for the Specific Recognition of RhoA by the Dual GTPase-activating Protein ARAP3*

Jihui Wu, Yunyu Shi, Fudong Li, 2016, The Journal of Biological Chemistry.

Crystal structure of Arabidopsis terminal uridylyl transferase URT1.

Q. Gong, Yunyu Shi, Q. Hu, 2020, Biochemical and biophysical research communications.

Structural and functional characterization of the RBBP4-ZNF827 interaction and its role in NuRD recruitment to telomeres.

H. Pickett, Yunyu Shi, Fudong Li, 2018, The Biochemical journal.

Structural insights reveal the specific recognition of meiRNA by the Mei2 protein

Jihui Wu, Yunyu Shi, Siyuan Shen, 2022, Journal of molecular cell biology.

Structural insights into the recognition of phosphorylated FUNDC1 by LC3B in mitophagy

Q. Gong, Yunyu Shi, Bin Wen, 2016, Protein & Cell.

Molecular mechanism underlying the di-uridylation activity of Arabidopsis TUTase URT1

Q. Gong, Huiru Yang, Zhiyong Zhang, 2022, Nucleic acids research.

Rotamer-free protein sequence design based on deep learning and self-consistency

Houqiang Li, Yufeng Liu, Jiahai Zhang, 2022, Nature Computational Science.

Structural Insights into ceNAP1 Chaperoning Activity toward ceH2A-H2B.

Jihui Wu, Yunyu Shi, Fudong Li, 2019, Structure.

NMR characterization of weak interactions between RhoGDI2 and fragment screening hits.

Jihui Wu, Fudong Li, K. Ruan, 2017, Biochimica et biophysica acta. General subjects.

Structural insights into the recognition of γ-globin gene promoter by BCL11A

Yunyu Shi, Fudong Li, Yang Yang, 2019, Cell Research.

ZNF524 directly interacts with telomeric DNA and supports telomere integrity

O. Dreesen, Yunyu Shi, F. Butter, 2022, bioRxiv.

Structures of the NDP-pyranose mutase belonging to glycosyltransferase family 75 reveal residues important for Mn2+ coordination and substrate binding

Yazhong Xiao, Haizhu Yu, Fudong Li, 2023, The Journal of biological chemistry.

Insights into the Structure of Dimeric RNA Helicase CsdA and Indispensable Role of Its C-Terminal Regions.

Rongguang Zhang, Q. Gong, Jiahai Zhang, 2017, Structure.

Crystal structure of a raw-starch-degrading bacterial α-amylase belonging to subfamily 37 of the glycoside hydrolase family GH13

Yazhong Xiao, Hui Peng, Fudong Li, 2017, Scientific Reports.

SAM-VI riboswitch structure and signature for ligand discrimination

R. Micura, A. Ren, O. Krasheninina, 2019, Nature Communications.

ERH facilitates microRNA maturation through the interaction with the N-terminus of DGCR8

Jeesoo Kim, V. Kim, Yunyu Shi, 2020, Nucleic acids research.

Polo-like kinase 1 coordinates biosynthesis during cell cycle progression by directly activating pentose phosphate pathway

Yunyu Shi, Huafeng Zhang, Fudong Li, 2017, Nature Communications.

TRIM66 reads unmodified H3R2K4 and H3K56ac to respond to DNA damage in embryonic stem cells

Jiuhong Kang, Yunyu Shi, Zikang Wang, 2019, Nature Communications.

Structure of the YTH domain of human YTHDF2 in complex with an m6A mononucleotide reveals an aromatic cage for m6A recognition

Jihui Wu, Yunyu Shi, Jihui Wu, 2014, Cell Research.

Combinatorial readout of unmodified H3R2 and acetylated H3K14 by the tandem PHD finger of MOZ reveals a regulatory mechanism for HOXA9 transcription.

Jiahai Zhang, Jihui Wu, Yunyu Shi, 2012, Genes & development.

transcription HOXA 9 for by the tandem PHD finger of MOZ reveals a regulatory mechanism Combinatorial readout of unmodified H 3 R 2 and acetylated H 3 K 14 Material Supplemental

Jiahai Zhang, Jihui Wu, Yunyu Shi, 2012 .

Structure of C-terminal Tandem BRCT Repeats of Rtt107 Protein Reveals Critical Role in Interaction with Phosphorylated Histone H2A during DNA Damage Repair*

Jihui Wu, Yunyu Shi, Kaixian Liu, 2012, The Journal of Biological Chemistry.

Structural basis of γH2AX recognition by human PTIP BRCT5‐BRCT6 domains in the DNA damage response pathway

Yunyu Shi, M. Teng, L. Niu, 2011, FEBS letters.

Structural insights reveal the specific recognition of roX RNA by the dsRNA-binding domains of the RNA helicase MLE and its indispensable role in dosage compensation in Drosophila.

Q. Gong, Yunyu Shi, Yixiang Yao, 2019 .

Structural insights reveal the specific recognition of roX RNA by the dsRNA-binding domains of the RNA helicase MLE and its indispensable role in dosage compensation in Drosophila

Q. Gong, Yunyu Shi, Yixiang Yao, 2019, Nucleic acids research.

Structural basis of the interaction between SETD2 methyltransferase and hnRNP L paralogs for governing co-transcriptional splicing

J. Workman, M. Washburn, L. Florens, 2021, Nature Communications.

Structural Basis of Plant Homeodomain Finger 6 (PHF6) Recognition by the Retinoblastoma Binding Protein 4 (RBBP4) Component of the Nucleosome Remodeling and Deacetylase (NuRD) Complex*

Jihui Wu, Yunyu Shi, Fudong Li, 2015, The Journal of Biological Chemistry.

Structural and Functional Insights into the Human Börjeson-Forssman-Lehmann Syndrome-associated Protein PHF6*

Jiahai Zhang, Jihui Wu, Yunyu Shi, 2014, The Journal of Biological Chemistry.

Specific recognition of phosphorylated tail of H2AX by the tandem BRCT domains of MCPH1 revealed by complex structure.

Q. Gong, Jihui Wu, Yunyu Shi, 2012, Journal of structural biology.

Structural insights into dimethylation of 12S rRNA by TFB1M: indispensable role in translation of mitochondrial genes and mitochondrial function

X. Yao, Q. Gong, Jihui Wu, 2019, Nucleic acids research.

The human RNA-binding protein and E3 ligase MEX-3C binds the MEX-3–recognition element (MRE) motif with high affinity

Q. Gong, Jiahai Zhang, Jihui Wu, 2017, The Journal of Biological Chemistry.

ZBTB10 binds the telomeric variant repeat TTGGGG and interacts with TRF2

Yunyu Shi, Sandra Ritz, F. Butter, 2019, Nucleic acids research.

NMR Fragment Screening Hit Induces Plasticity of BRD7/9 Bromodomains

Jihui Wu, Jie Li, Fudong Li, 2016, Chembiochem : a European journal of chemical biology.

Conformational Selection in Ligand Recognition by the First Tudor Domain of PHF20L1.

X. Yao, Jiahai Zhang, Jihui Wu, 2020, The journal of physical chemistry letters.

Conformational Selection in Ligand Recognition by the First Tudor Domain of PHF20L1

X. Yao, Jiahai Zhang, Jihui Wu, 2020, bioRxiv.

Structural investigation of the interaction between the tandem SH3 domains of c-Cbl-associated protein and vinculin.

Q. Gong, Jiahai Zhang, Jihui Wu, 2014, Journal of structural biology.

Structural and biochemical insights into human zinc finger protein AEBP2 reveals interactions with RBBP4

Jiahai Zhang, Jihui Wu, Yunyu Shi, 2017, Protein & Cell.

Crystal structure and functional characterization of the human RBM25 PWI domain and its flanking basic region

Jihui Wu, Yunyu Shi, Fan Yang, 2012, The Biochemical journal.

A conserved dimer interface connects ERH and YTH family proteins to promote gene silencing

S. Grewal, Yunyu Shi, Tommy V. Vo, 2019, Nature Communications.

The Methyltransferase NSD3 Has Chromatin-binding Motifs, PHD5-C5HCH, That Are Distinct from Other NSD (Nuclear Receptor SET Domain) Family Members in Their Histone H3 Recognition*

Jiahai Zhang, Jihui Wu, Yunyu Shi, 2012, The Journal of Biological Chemistry.

Identification and structural basis for a novel interaction between Vav2 and Arap3.

X. Yao, Q. Gong, Jiahai Zhang, 2012, Journal of structural biology.

Structural insights into the recognition of phosphorylated Hop1 by Mek1.

Jihui Wu, Yunyu Shi, C. Tian, 2018, Acta crystallographica. Section D, Structural biology.

Structural insights into the recognition of telomeric variant repeat TTGGGG by broad-complex, tramtrack and bric-à-brac - zinc finger protein ZBTB10

Yunyu Shi, Siyuan Shen, Fudong Li, 2023, The Journal of biological chemistry.

The 11th C2H2 zinc finger and an adjacent C-terminal arm are responsible for TZAP recognition of telomeric DNA

Yunyu Shi, Yaqing Zhao, Yide Mei, 2017, Cell Research.

Crystal structure of tRNA m1G9 methyltransferase Trm10: insight into the catalytic mechanism and recognition of tRNA substrate

Q. Gong, Jihui Wu, Yunyu Shi, 2013, Nucleic acids research.

The polar warhead of a TRIM24 bromodomain inhibitor rearranges a water‐mediated interaction network

Jihui Wu, Fudong Li, Yiyang Jiang, 2017, The FEBS journal.

Two Binding Sites of SARS-CoV-2 Macrodomain 3 Probed by Oxaprozin and Meclomen.

Jiahai Zhang, Jihui Wu, Yunyu Shi, 2022, Journal of medicinal chemistry.

Crystal structure of triple‐BRCT‐domain of ECT2 and insights into the binding characteristics to CYK‐4

Q. Gong, Jihui Wu, Yunyu Shi, 2014, FEBS letters.

Sterical Hindrance Promotes Selectivity of the Autophagy Cargo Receptor NDP52 for the Danger Receptor Galectin-8 in Antibacterial Autophagy

Jihui Wu, Yunyu Shi, F. Randow, 2013, Science Signaling.

NMR Fragment-Based Screening against Tandem RNA Recognition Motifs of TDP-43

Jiahai Zhang, Jihui Wu, Yunyu Shi, 2019, International journal of molecular sciences.

Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq

Q. Gong, Jiahai Zhang, Weiwei Wang, 2015, Nucleic acids research.

Structural insights on mouse L-threonine dehydrogenase: A regulatory role of Arg180 in catalysis.

Yunyu Shi, Yazhong Xiao, Fudong Li, 2015, Journal of structural biology.

Unveiling the structural features that determine the dual methyltransferase activities of Streptococcus pneumoniae RlmCD

Q. Gong, Yunyu Shi, Fudong Li, 2018, PLoS pathogens.

Structural plasticity of the TDRD3 Tudor domain probed by a fragment screening hit

Jiahai Zhang, Jihui Wu, Mingqing Liu, 2018, The FEBS journal.

Repurposing Low-Molecular-Weight Drugs against the Main Protease of Severe Acute Respiratory Syndrome Coronavirus 2

Jiahai Zhang, Jihui Wu, Yunyu Shi, 2020, The journal of physical chemistry letters.

Repurposing low–molecular-weight drugs against the main protease of severe acute respiratory syndrome coronavirus 2

Jiahai Zhang, Jihui Wu, Yunyu Shi, 2020, bioRxiv.

Repurposing low-molecular-weight drugs against the main protease of SARS-CoV-2

Jiahai Zhang, Jihui Wu, Yunyu Shi, 2020 .

Polo-like kinase 1 coordinates biosynthesis during cell cycle progression by directly activating pentose phosphate pathway

Tingting Li, Kui-qing Li, Yunyu Shi, 2017, Nature Communications.

Biocatalytic Enantioselective β-Hydroxylation of Unactivated C-H Bonds in Aliphatic Carboxylic Acids.

Fudong Li, Wen‐Ju Bai, Chao He, 2022, Angewandte Chemie.

Structural insights into a unique preference for 3′ terminal guanine of mirtron in Drosophila TUTase tailor

Q. Gong, Yunyu Shi, Fudong Li, 2018, Nucleic acids research.

ZBTB48 is a pioneer factor regulating B-cell-specific CIITA expression

Yunyu Shi, Motomi Osato, Fudong Li, 2023, bioRxiv.

ZBTB7A regulates primed‐to‐naïve transition of pluripotent stem cells via recognition of the PNT‐associated sequence by zinc fingers 1–2 and recognition of γ‐globin −200 gene element by zinc fingers 1–4

Yunyu Shi, Jing Liu, D. Pei, 2023, The FEBS journal.

Crystal structure of human BS69 Bromo-ZnF-PWWP reveals its role in H3K36me3 nucleosome binding

Wei Zhang, Q. Gong, Jihui Wu, 2014, Cell Research.

Protocols for protein-DNA binding analysis of a zinc finger transcription factor bound to its cognate promoter

K. Quinlan, Yunyu Shi, M. Crossley, 2022, STAR protocols.

the mutant SAM-VI riboswitch (U6C) bound to SAM

R. Micura, A. Ren, Hao Chen, 2019 .

Structural and biochemical insights into the recognition of RNA helicase CGH-1 by CAR-1 in C. elegans.

Jiahai Zhang, Yunyu Shi, Fudong Li, 2021, Biochemical and biophysical research communications.

Crystal structure of MLE dsRBDs in complex with roX2 (R2H1)

Q. Gong, Yunyu Shi, Yixiang Yao, 2019 .

Structural insight into the recognition of acetylated histone H3K56ac mediated by the bromodomain of CREB‐binding protein

Catherine C L Wong, Jiahai Zhang, Jihui Wu, 2017, The FEBS journal.

Sterical Hindrance Promotes Selectivity of the Autophagy Cargo Receptor NDP52 for the Danger Receptor Galectin-8 in Antibacterial Autophagy

Jihui Wu, Yunyu Shi, F. Randow, 2013, Science Signaling.

Identification and structural basis for a novel interaction between Vav2 and Arap3.

X. Yao, Q. Gong, Jiahai Zhang, 2012, Journal of structural biology.

ZBTB10 binds the telomeric variant repeat TTGGGG and interacts with TRF2

Yunyu Shi, Sandra Ritz, F. Butter, 2019, Nucleic acids research.

Structural insights into the specific recognition of mitochondrial ribosome-binding factor hsRBFA and 12 S rRNA by methyltransferase METTL15

Fudong Li, M. Lv, Wanwan Zhou, 2024, Cell Discovery.

Fluorine Pseudocontact Shifts Used for Characterizing the Protein-Ligand Interaction Mode in the Limit of NMR Intermediate Exchange.

Conggang Li, Jihui Wu, Haiming Dai, 2017, Angewandte Chemie.

Structural analysis of Stc1 provides insights into the coupling of RNAi and chromatin modification

Jiahai Zhang, Jihui Wu, Yunyu Shi, 2013, Proceedings of the National Academy of Sciences.

Structural insights into the recognition of the A/T‐rich motif in target gene promoters by the LMX1a homeobox domain

Fudong Li, M. Lv, Jia Gao, 2024, The FEBS journal.