Xiaoning Qian

发表

Joint clustering of protein interaction networks through Markov random walk

Yijie Wang, Xiaoning Qian, Xiaoning Qian, 2014, BMC Systems Biology.

Contour-based hidden Markov model to segment 2D ultrasound images

Xiaoning Qian, Byung-Jun Yoon, Xiaoning Qian, 2011, 2011 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Adaptive bi-level programming for optimal gene knockouts for targeted overproduction under phenotypic constraints

Xiaoning Qian, Shaogang Ren, Bo Zeng, 2013, BMC Bioinformatics.

Variational Graph Recurrent Neural Networks

Xiaoning Qian, Mingyuan Zhou, Ehsan Hajiramezanali, 2019, NeurIPS.

Phenotypically constrained Boolean network inference with prescribed steady states

Edward R. Dougherty, Xiaoning Qian, E. Dougherty, 2013, 2013 IEEE International Workshop on Genomic Signal Processing and Statistics.

Comparative Analysis of Biological Networks: Hidden Markov model and Markov chain-based approach

Xiaoning Qian, Byung-Jun Yoon, Sayed Mohammad Ebrahim Sahraeian, 2012, IEEE Signal Processing Magazine.

Bayesian multi-domain learning for cancer subtype discovery from next-generation sequencing count data

Xiaoning Qian, Mingyuan Zhou, Ehsan Hajiramezanali, 2018, NeurIPS.

Effect of Function Perturbation on the Steady-State Distribution of Genetic Regulatory Networks: Optimal Structural Intervention

Edward R. Dougherty, Xiaoning Qian, E. Dougherty, 2008, IEEE Transactions on Signal Processing.

Shape matching based on graph alignment using hidden Markov models

Xiaoning Qian, Byung-Jun Yoon, Xiaoning Qian, 2010, 2010 IEEE International Conference on Acoustics, Speech and Signal Processing.

TOPAS: network-based structural alignment of RNA sequences

Xiaoning Qian, Byung-Jun Yoon, Chun-Chi Chen, 2019, Bioinform..

Sparse exponential family Principal Component Analysis

Xiaoning Qian, Jianhua Z. Huang, Meng Lu, 2016, Pattern Recognit..

Pairwise interaction analysis of logistic regression models

Shuguang Cui, Tie Liu, Xiaoning Qian, 2016, 2016 IEEE Global Conference on Signal and Information Processing (GlobalSIP).

Semi-Implicit Stochastic Recurrent Neural Networks

Xiaoning Qian, Mingyuan Zhou, Ehsan Hajiramezanali, 2020, ICASSP 2020 - 2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Detecting Pairwise Interactive Effects of Continuous Random Variables for Biomarker Identification with Small Sample Size

Xiaoning Qian, Amin Ahmadi Adl, Hye-Seung Lee, 2017, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Video‐based 3D reconstruction, laparoscope localization and deformation recovery for abdominal minimally invasive surgery: a survey

Yuncheng You, Xiaoning Qian, Bingxiong Lin, 2016, The international journal of medical robotics + computer assisted surgery : MRCAS.

Optimal Bayesian Kalman Filtering With Prior Update

Edward R. Dougherty, Xiaoning Qian, Roozbeh Dehghannasiri, 2018, IEEE Transactions on Signal Processing.

Autonomous efficient experiment design for materials discovery with Bayesian model averaging

Xiaoning Qian, Shahin Boluki, Anjana Talapatra, 2018, Physical Review Materials.

Feature selection with interactions in logistic regression models using multivariate synergies for a GWAS application

Shuguang Cui, Qilian Yu, Xiaoning Qian, 2017, BMC Genomics.

State reduction for network intervention in probabilistic Boolean networks

Edward R. Dougherty, Xiaoning Qian, Ivan Ivanov, 2010, Bioinform..

Enhancing the accuracy of HMM-based conserved pathway prediction using global correspondence scores

Xiaoning Qian, Byung-Jun Yoon, Sayed Mohammad Ebrahim Sahraeian, 2011, BMC Bioinformatics.

CHI: A contemporaneous health index for degenerative disease monitoring using longitudinal measurements

Yu Cheng, William B. Lober, Qiang Meng, 2017, J. Biomed. Informatics.

Emerging Research in the Analysis and Modeling of Gene Regulatory Networks

Xiaoning Qian, Ranadip Pal, Ivan Ivanov, 2016 .

Overcoming dropout while segmenting cardiac ultrasound images

Hemant D. Tagare, Xiaoning Qian, H. Tagare, 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

Constructing Pathway-Based Priors within a Gaussian Mixture Model for Bayesian Regression and Classification

Edward R. Dougherty, Xiaoning Qian, Shahin Boluki, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Deep Co-Saliency Detection via Stacked Autoencoder-Enabled Fusion and Self-Trained CNNs

Xiaoning Qian, Yung-Yu Chuang, Chung-Chi Tsai, 2020, IEEE Transactions on Multimedia.

Structural Intervention and External Control for Markovian Regulatory Network Models

Xiaoning Qian, Ranadip Pal, R. Pal, 2019, Biotechnology.

Collaborative Global-Local Networks for Memory-Efficient Segmentation of Ultra-High Resolution Images

Xiaoning Qian, Zhangyang Wang, Ziyu Jiang, 2019, 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR).

Convex clustering with metric learning

Tie Liu, Xiaoning Qian, Li Xu, 2018, Pattern Recognit..

Comparative analysis of protein interaction networks reveals that conserved pathways are susceptible to HIV-1 interception

Xiaoning Qian, Byung-Jun Yoon, Xiaoning Qian, 2011, BMC Bioinformatics.

Quantifying the Objective Cost of Uncertainty in Complex Dynamical Systems

Edward R. Dougherty, Xiaoning Qian, Byung-Jun Yoon, 2013, IEEE Transactions on Signal Processing.

Safe Active Feature Selection for Sparse Learning pdf

Xiaoning Qian, Jianhua Z. Huang, Shaogang Ren, 2018, ArXiv.

Image co-saliency detection via locally adaptive saliency map fusion

Xiaoning Qian, Chung-Chi Tsai, Yen-Yu Lin, 2017, 2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Bayesian Kalman filtering in the presence of unknown noise statistics using factor graphs

Edward R. Dougherty, Xiaoning Qian, Roozbeh Dehghannasiri, 2017, 2017 51st Asilomar Conference on Signals, Systems, and Computers.

Bayesian gamma-negative binomial modeling of single-cell RNA sequencing data

Xiaoning Qian, Mingyuan Zhou, Sing-Hoi Sze, 2019, BMC Genomics.

Supervised logistic principal component analysis for pathway based genome-wide association studies

Xiaoning Qian, Jianhua Z. Huang, Meng Lu, 2012, BCB.

Uncertainty-based essentiality in gene regulatory networks

Edward R. Dougherty, Xiaoning Qian, Byung-Jun Yoon, 2011, 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS).

Biological network clustering by robust NMF

Yijie Wang, Xiaoning Qian, 2014, BCB.

Probabilistic Best Subset Selection via Gradient-Based Optimization

Xiaoning Qian, Mingyuan Zhou, Nhat Ho, 2020, 2006.06448.

Pairwise Supervised Hashing with Bernoulli Variational Auto-Encoder and Self-Control Gradient Estimator pdf

Xiaoning Qian, Mingyuan Zhou, Shahin Boluki, 2020, UAI.

Selected articles from the 2012 IEEE international workshop on genomic signal processing and statistics (GENSIPS 2012)

Yufei Huang, Xiaoning Qian, Yidong Chen, 2014, TCBB.

Validation of gene regulatory network inference based on controllability

Edward R. Dougherty, Xiaoning Qian, E. Dougherty, 2013, Front. Genet..

Simultaneous Tracking, 3D Reconstruction and Deforming Point Detection for Stereoscope Guided Surgery

Yu Sun, Xiaoning Qian, Bingxiong Lin, 2013, AE-CAI.

Bayesian Regression With Network Prior: Optimal Bayesian Filtering Perspective

Edward R. Dougherty, Xiaoning Qian, E. Dougherty, 2016, IEEE Transactions on Signal Processing.

Optimal Bayesian Transfer Learning

Edward R. Dougherty, Xiaoning Qian, Alireza Karbalayghareh, 2018, IEEE Transactions on Signal Processing.

An objective-based experimental design framework for signal processing in the context of canonical expansions

Edward R. Dougherty, Xiaoning Qian, Roozbeh Dehghannasiri, 2017, 2017 51st Asilomar Conference on Signals, Systems, and Computers.

Dynamic Inspection of Latent Variables in State-Space Systems

Xiaoning Qian, Kaibo Liu, Tianshu Feng, 2019, IEEE Transactions on Automation Science and Engineering.

Functional module identification by block modeling using simulated annealing with path relinking

Yijie Wang, Xiaoning Qian, Xiaoning Qian, 2012, BCB.

Optimal Bayesian Classification With Missing Values

Edward R. Dougherty, Xiaoning Qian, Siamak Zamani Dadaneh, 2018, IEEE Transactions on Signal Processing.

Incorporating biological prior knowledge for Bayesian learning via maximal knowledge-driven information priors

Edward R. Dougherty, Xiaoning Qian, Shahin Boluki, 2017, BMC Bioinformatics.

Recursive Structure Similarity: A Novel Algorithm for Graph Clustering

Wei Xiong, Ruoming Jin, Xiaoning Qian, 2018, 2018 IEEE 30th International Conference on Tools with Artificial Intelligence (ICTAI).

Shape based retrieval in NHANES II

Hemant D. Tagare, Xiaoning Qian, L. Rodney Long, 2004, MULTIMEDIA '04.

A reliable alternative of OptKnock for desirable mutant microbial strains

Xiaoning Qian, Bo Zeng, Meltem Apaydin, 2016, 2016 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI).

Finding Low-Conductance sets with Dense interactions (FLCD) for better protein complex prediction

Yijie Wang, Xiaoning Qian, 2016, BCB.

RNAdetect: efficient computational detection of novel non-coding RNAs

Xiaoning Qian, Chun-Chi Chen, Byung-Jun Yoon, 2018, Bioinform..

CUFID-query: accurate network querying through random walk based network flow estimation

Xiaoning Qian, Byung-Jun Yoon, Hyundoo Jeong, 2017, BMC Bioinformatics.

Tumor stratification by a novel graph-regularized bi-clique finding algorithm

Xiaoning Qian, Amin Ahmadi Adl, Xiaoning Qian, 2015, Comput. Biol. Chem..

Finding low-conductance sets with dense interactions (FLCD) for better protein complex prediction

Yijie Wang, Xiaoning Qian, Xiaoning Qian, 2016, BMC Systems Biology.

Optimal experimental design in the context of canonical expansions

Edward R. Dougherty, Xiaoning Qian, Roozbeh Dehghannasiri, 2017, IET Signal Process..

NADS: Neural Architecture Distribution Search for Uncertainty Awareness

Xiaoning Qian, Xinyu Gong, Zhangyang Wang, 2020, ICML.

Selection Policy-Induced Reduction Mappings for Boolean Networks

Edward R. Dougherty, Xiaoning Qian, Plamen Simeonov, 2010, IEEE Transactions on Signal Processing.

Bayesian module identification from multiple noisy networks

Xiaoning Qian, Siamak Zamani Dadaneh, Xiaoning Qian, 2016, EURASIP J. Bioinform. Syst. Biol..

Adaptive Activity Monitoring with Uncertainty Quantification in Switching Gaussian Process Models

Bobak Mortazavi, Xiaoning Qian, Zhangyang Wang, 2019, AISTATS.

Optimal experimental design in canonical expansions with applications to signal compression

Edward R. Dougherty, Xiaoning Qian, Roozbeh Dehghannasiri, 2016, 2016 IEEE Global Conference on Signal and Information Processing (GlobalSIP).

Efficient Vessel Feature Detection for Endoscopic Image Analysis

Yu Sun, Xiaoning Qian, Bingxiong Lin, 2015, IEEE Transactions on Biomedical Engineering.

Quantifying the Multi-Objective Cost of Uncertainty pdf

Edward R. Dougherty, Xiaoning Qian, Byung-Jun Yoon, 2020, IEEE Access.

Optimal clustering with missing values

Edward R. Dougherty, Xiaoning Qian, Shahin Boluki, 2018, BMC Bioinformatics.

Blockmodel module identification in protein interaction networks through Markov random walk

Yijie Wang, Xiaoning Qian, Xiaoning Qian, 2013, 21st European Signal Processing Conference (EUSIPCO 2013).

Optimal clustering with missing values

Edward R. Dougherty, Xiaoning Qian, Shahin Boluki, 2018, BMC Bioinformatics.

Control-compatible state reduction for Boolean networks

Edward R. Dougherty, Xiaoning Qian, 2009, 2009 IEEE International Workshop on Genomic Signal Processing and Statistics.

BayReL: Bayesian Relational Learning for Multi-omics Data Integration pdf

Xiaoning Qian, Ehsan Hajiramezanali, Arman Hasanzadeh, 2020, NeurIPS.

Image Co-Saliency Detection and Co-Segmentation via Progressive Joint Optimization

Xiaoning Qian, Chung-Chi Tsai, Yen-Yu Lin, 2019, IEEE Transactions on Image Processing.

A Scalable Algorithm for Structured Kernel Feature Selection

Xiaoning Qian, Xenophon Papademetris, John A. Onofrey, 2015, AISTATS.

Optimal hybrid sequencing and assembly: Feasibility conditions for accurate genome reconstruction and cost minimization strategy

Xiaoning Qian, Chun-Chi Chen, Byung-Jun Yoon, 2017, Comput. Biol. Chem..

Logistic Principal Component Analysis for Rare Variants in Gene-Environment Interaction Analysis

Xiaoning Qian, Jianhua Z. Huang, Meng Lu, 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Semi-Implicit Graph Variational Auto-Encoders

Xiaoning Qian, Mingyuan Zhou, Ehsan Hajiramezanali, 2019, NeurIPS.

Structured sparse PCA to identify miRNA co-regulatory modules

Xiaoning Qian, Shaogang Ren, 2014, 2014 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Network-Based Methods to Identify Highly Discriminating Subsets of Biomarkers

Xiaoning Qian, Bo Zeng, Seyed Javad Sajjadi, 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Experimental Design via Generalized Mean Objective Cost of Uncertainty

Edward R. Dougherty, Xiaoning Qian, Shahin Boluki, 2018, IEEE Access.

Early detection and risk assessment for chronic disease with irregular longitudinal data analysis

Xiaoning Qian, Kai He, Shuai Huang, 2019, J. Biomed. Informatics.

Bayesian Graph Neural Networks with Adaptive Connection Sampling

Xiaoning Qian, Mingyuan Zhou, Ehsan Hajiramezanali, 2020, ICML.

Network-regularized bi-clique finding for tumor stratification

Xiaoning Qian, Amin Ahmadi Adl, 2014, BCB.

Bayesian negative binomial regression for differential expression with confounding factors

Xiaoning Qian, Mingyuan Zhou, Siamak Zamani Dadaneh, 2019, Bioinform..

Stationary and structural control in gene regulatory networks: basic concepts

Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty, 2010, Int. J. Syst. Sci..

Robust Smoothing for State-Space Models with Unknown Noise Statistics

Edward R. Dougherty, Xiaoning Qian, Roozbeh Dehghannasiri, 2018, 2018 52nd Asilomar Conference on Signals, Systems, and Computers.

Optimal Embedding for Shape Indexing in Medical Image Databases

Hemant D. Tagare, Xiaoning Qian, H. Tagare, 2005, MICCAI.

Adapting indexing trees to data distribution in feature spaces

Hemant D. Tagare, Xiaoning Qian, H. Tagare, 2010, Comput. Vis. Image Underst..

Effective visualization of complex vascular structures using a non-parametric vessel detection method

Xiaoning Qian, Alark Joshi, Xenophon Papademetris, 2008, IEEE Transactions on Visualization and Computer Graphics.

Identifying overlapping functional modules in biological networks by Markov random walk

Yijie Wang, Xiaoning Qian, Xiaoning Qian, 2013, 2013 IEEE Global Conference on Signal and Information Processing.

Safe Feature Screening for Generalized LASSO

Xiaoning Qian, Shuai Huang, Jieping Ye, 2018, IEEE Transactions on Pattern Analysis and Machine Intelligence.

A novel subgradient-based optimization algorithm for blockmodel functional module identification

Yijie Wang, Xiaoning Qian, Xiaoning Qian, 2013, BMC Bioinformatics.

A comparative study on sensitivities of Boolean networks

Edward R. Dougherty, Xiaoning Qian, 2010, 2010 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS).

Co-segmentation of multiple images through random walk on graphs

Yijie Wang, Xiaoning Qian, Byung-Jun Yoon, 2016, 2016 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Effective comparative analysis of protein-protein interaction networks by measuring the steady-state network flow using a Markov model

Xiaoning Qian, Byung-Jun Yoon, Hyundoo Jeong, 2016, BMC Bioinformatics.

Joint clustering of protein interaction networks by block modeling

Yijie Wang, Xiaoning Qian, 2014, 2014 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Selected research articles from the 2018 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

Tamer Kahveci, Xiaoning Qian, Byung-Jun Yoon, 2019, BMC Bioinformatics.

Querying Pathways in Protein Interaction Networks Based on Hidden Markov Models

Xiaoning Qian, Byung-Jun Yoon, Sing-Hoi Sze, 2009, J. Comput. Biol..

Functional module identification in protein interaction networks by interaction patterns

Yijie Wang, Xiaoning Qian, Xiaoning Qian, 2014, Bioinform..

Uncertainty Quantification for Deep Context-Aware Mobile Activity Recognition and Unknown Context Discovery pdf

Xiaohan Chen, Bobak Mortazavi, Xiaoning Qian, 2020, AISTATS.

Optimal Bayesian Transfer Regression

Edward R. Dougherty, Xiaoning Qian, Alireza Karbalayghareh, 2018, IEEE Signal Processing Letters.

How Influential Are You: Detecting Influential Bloggers in a Blogging Community

Xiaoning Qian, Adriana Iamnitchi, John Skvoretz, 2012, SocInfo.

Learnable Bernoulli Dropout for Bayesian Deep Learning pdf

Xiaoning Qian, Mingyuan Zhou, Shahin Boluki, 2020, AISTATS.

Detection of Cooperative Interactions in Logistic Regression Models

Shuguang Cui, Tie Liu, Xiaoning Qian, 2016, IEEE Transactions on Signal Processing.

A Collaborative Learning Framework for Estimating Many Individualized Regression Models in a Heterogeneous Population

Shan Liu, Eunshin Byon, Xiaoning Qian, 2018, IEEE Transactions on Reliability.

Serial nonrigid vascular registration using weighted normalized mutual information

Dustin Scheinost, Xiaoning Qian, Xenophon Papademetris, 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Selected research articles from the 2016 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

Tamer Kahveci, Xiaoning Qian, Byung-Jun Yoon, 2017, BMC Bioinformatics.

Effective computational detection of piRNAs using n-gram models and support vector machine

Xiaoning Qian, Chun-Chi Chen, Byung-Jun Yoon, 2017, BMC Bioinformatics.

Thin plate spline feature point matching for organ surfaces in minimally invasive surgery imaging

Yu Sun, Xiaoning Qian, Bingxiong Lin, 2013, Medical Imaging.

Pessimistic optimisation for modelling microbial communities with uncertainty

Xiaoning Qian, Bo Zeng, Liang Xu, 2020 .

A computationally efficient solution strategy for optimal gene knockouts for targeted overproduction

Xiaoning Qian, Shaogang Ren, Bo Zeng, 2015, BCB.

Dense Surface Reconstruction With Shadows in MIS

Yu Sun, Xiaoning Qian, Bingxiong Lin, 2013, IEEE Transactions on Biomedical Engineering.

Stochastic coordinate descent Frank-Wolfe algorithm for large-scale biological network alignment

Yijie Wang, Xiaoning Qian, 2014, 2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP).

Feature ranking based on synergy networks to identify prognostic markers in DPT-1

Jeffrey P. Krischer, Ping Xu, Xiaoning Qian, 2012, Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS).

Segmentation guided local proposal fusion for co-saliency detection

Xiaoning Qian, Chung-Chi Tsai, Yen-Yu Lin, 2017, 2017 IEEE International Conference on Multimedia and Expo (ICME).

Vesselness based feature extraction for endoscopic image analysis

Yu Sun, Xiaoning Qian, Bingxiong Lin, 2014, 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI).

Optimal embedding for shape indexing in medical image databases

Hemant D. Tagare, Xiaoning Qian, L. Rodney Long, 2010, Medical Image Anal..

Functional analysis of grasping motion

Wei Dai, Yu Sun, Xiaoning Qian, 2013, 2013 IEEE/RSJ International Conference on Intelligent Robots and Systems.

Model-Based Robust Filtering and Experimental Design for Stochastic Differential Equation Systems

Edward R. Dougherty, Xiaoning Qian, Byung-Jun Yoon, 2020, IEEE Transactions on Signal Processing.

A computational framework for finding functional modules across multiple biological networks

Yijie Wang, Xiaoning Qian, Xiaoning Qian, 2015, BCB.

A new phenotypically constrained control policy in boolean networks based on basins of attraction

Xiaoning Qian, 2012, Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS).

Stochastic block coordinate Frank-Wolfe algorithm for large-scale biological network alignment

Yijie Wang, Xiaoning Qian, 2016, EURASIP J. Bioinform. Syst. Biol..

Selected research articles from the 2017 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

Tamer Kahveci, Xiaoning Qian, Byung-Jun Yoon, 2018, BMC Bioinformatics.

Structural intervention of gene regulatory networks by general rank-k matrix perturbation

Edward R. Dougherty, Xiaoning Qian, Byung-Jun Yoon, 2012, 2012 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Segmentation of Rat Cardiac Ultrasound Images with Large Dropout Regions

Hemant D. Tagare, Xiaoning Qian, Zhong Tao, 2006, 2006 Conference on Computer Vision and Pattern Recognition Workshop (CVPRW'06).

Intrinsically Bayesian robust Karhunen-Loève compression

Edward R. Dougherty, Xiaoning Qian, Roozbeh Dehghannasiri, 2018, Signal Process..

CNB-MAC'17: The Fourth International Workshop on Computational Network Biology: Modeling, Analysis, and Control

Tamer Kahveci, Xiaoning Qian, Byung-Jun Yoon, 2017, BCB.

Pessimistic optimisation for modelling microbial communities with uncertainty

Xiaoning Qian, Liang Xu, Bo Zeng, 2020, Int. J. Comput. Biol. Drug Des..

Inference of gene regulatory networks: validation and uncertainty

Edward R. Dougherty, Xiaoning Qian, Byung-Jun Yoon, 2016, Big Data over Networks.

Noise-tolerant deep learning for histopathological image segmentation

Xiaoning Qian, Weizhi Li, Jim Jing-Yan Ji, 2017, 2017 IEEE International Conference on Image Processing (ICIP).

Unsupervised CNN-Based Co-saliency Detection with Graphical Optimization

Xiaoning Qian, Yung-Yu Chuang, Chung-Chi Tsai, 2018, ECCV.

Feature ranking based on synergy networks to identify prognostic markers in DPT-1

Jeffrey P. Krischer, Ping Xu, Xiaoning Qian, 2012, Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS).

Optimal Bayesian Transfer Learning for Count Data

Xiaoning Qian, Alireza Karbalayghareh, Edward Russell Dougherty, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Supervised categorical principal component analysis for genome-wide association analyses

Xiaoning Qian, Jianhua Z. Huang, Meng Lu, 2014, BMC Genomics.

Intervention in gene regulatory networks via greedy control policies based on long-run behavior

Edward R. Dougherty, Xiaoning Qian, Ivan Ivanov, 2009, BMC Systems Biology.

Session TA8a1: Signal processing methods for representation, analysis, and control of biological systems

Xiaoning Qian, Byung-Jun Yoon, 2011, ACSCC.

A Bayesian robust Kalman smoothing framework for state-space models with uncertain noise statistics

Edward R. Dougherty, Xiaoning Qian, Roozbeh Dehghannasiri, 2018, EURASIP J. Adv. Signal Process..

Fast Exact Computation of Expected HyperVolume Improvement pdf

Xiaoning Qian, Guang Zhao, Raymundo Arroyave, 2018, ArXiv.

Optimal Bayesian Transfer Learning for Classifying Multivariate Gaussian Observations

Edward R. Dougherty, Xiaoning Qian, Alireza Karbalayghareh, 2018, 2018 New York Scientific Data Summit (NYSDS).

Prognostics of Surgical Site Infections using Dynamic Health Data

William B. Lober, Xiaoning Qian, Yan Jin, 2016, J. Biomed. Informatics.

A CoD-based reduction algorithm for designing stationary control policies on Boolean networks

Edward R. Dougherty, Xiaoning Qian, Ivan Ivanov, 2010, Bioinform..

A non-parametric vessel detection method for complex vascular structures

Xiaoning Qian, Xenophon Papademetris, Albert J. Sinusas, 2009, Medical Image Anal..

Bayesian negative binomial regression for differential expression with confounding factors

Xiaoning Qian, Mingyuan Zhou, Siamak Zamani Dadaneh, 2018, Bioinform..

Scalable optimal Bayesian classification of single-cell trajectories under regulatory model uncertainty

Edward R. Dougherty, Xiaoning Qian, Ulisses Braga-Neto, 2018, BMC Genomics.

Arsm Gradient Estimator for Supervised Learning to Rank

Xiaoning Qian, Mingyuan Zhou, Shahin Boluki, 2020, ICASSP 2020 - 2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Domain-Knowledge Driven Cognitive Degradation Modeling for Alzheimer's Disease

Ying Lin, Eunshin Byon, Xiaoning Qian, 2015, SDM.

Detection of Complex Vascular Structures using Polar Neighborhood Intensity Profile

Xiaoning Qian, Donald P. Dione, Lawrence W. Dobrucki, 2007, 2007 IEEE 11th International Conference on Computer Vision.

A CoD-based stationary control policy for intervening in large gene regulatory networks

Edward R. Dougherty, Xiaoning Qian, Ivan Ivanov, 2011, BMC Bioinformatics.

Covariate-dependent negative binomial factor analysis of RNA sequencing data

Xiaoning Qian, Mingyuan Zhou, Siamak Zamani Dadaneh, 2018, Bioinform..

Cone-Beam Computed Tomography (CBCT) Segmentation by Adversarial Learning Domain Adaptation

Steve B. Jiang, Ming Yang, Xiaoning Qian, 2019, MICCAI.

Intervention in Gene Regulatory Networks via Phenotypically Constrained Control Policies Based on Long-Run Behavior

Edward R. Dougherty, Xiaoning Qian, Xiaoning Qian, 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

SimCD: Simultaneous Clustering and Differential expression analysis for single-cell transcriptomic data

Xiaoning Qian, Ehsan Hajiramezanali, Shahin Boluki, 2021, 2104.01512.

GPSRL: Learning Semi-Parametric Bayesian Survival Rule Lists from Heterogeneous Patient Data

Xiaoning Qian, Zhangyang Wang, Bobak Mortazavi, 2021, 2020 25th International Conference on Pattern Recognition (ICPR).

Uncertainty-aware Active Learning for Optimal Bayesian Classifier

Edward R. Dougherty, Xiaoning Qian, Byung-Jun Yoon, 2021, ICLR.

Optimal Decision Making in High-Throughput Virtual Screening Pipelines pdf

Shantenu Jha, Edward R. Dougherty, Xiaoning Qian, 2021, ArXiv.

Optimal Bayesian supervised domain adaptation for RNA sequencing data

Edward R. Dougherty, Xiaoning Qian, Shahin Boluki, 2021, Bioinform..

Robust Importance Sampling for Error Estimation in the Context of Optimal Bayesian Transfer Learning pdf

Edward R. Dougherty, Xiaoning Qian, Byung-Jun Yoon, 2021, SSRN Electronic Journal.

Quantifying the Multi-Objective Cost of Uncertainty

Edward R. Dougherty, Xiaoning Qian, Byung-Jun Yoon, 2020, IEEE Access.

Adaptive Group Testing with Mismatched Models

Edward R. Dougherty, Xiaoning Qian, Byung-Jun Yoon, 2021, ICASSP 2022 - 2022 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Geometric Affinity Propagation for Clustering with Network Knowledge pdf

Xiaoning Qian, Byung-Jun Yoon, Omar Maddouri, 2021, ArXiv.

Physics-constrained Automatic Feature Engineering for Predictive Modeling in Materials Science

Xiaoning Qian, Byung-Jun Yoon, Xiaofeng Qian, 2021, AAAI.

Risk Factor Identification in Heterogeneous Disease Progression with L1-Regularized Multi-state Models

Xiaoning Qian, Shuai Huang, Xuan Dang, 2021, Journal of Healthcare Informatics Research.

Trimer: Transcription Regulation Integrated With MEtabolic Regulation

Edward R. Dougherty, Xiaoning Qian, Byung-Jun Yoon, 2021, SSRN Electronic Journal.

Bayesian Active Learning by Soft Mean Objective Cost of Uncertainty

Edward R. Dougherty, Xiaoning Qian, Byung-Jun Yoon, 2021, AISTATS.

Synthetic Data for Design and Evaluation of Binary Classifiers in the Context of Bayesian Transfer Learning

Edward R. Dougherty, Xiaoning Qian, Byung-Jun Yoon, 2021 .