Reuben Thomas

Identification of steady-state genetic networks: linear vs. non-linear models, simulation-optimization based inference methods, missing genes and network architecture

Sanjay Mehrotra, Vassily Hatzimanikatis, Eleftherios T. Papoutsakis, 2006 .

Inference of Regulatory Interactions in Genetic Systems

Reuben Thomas, 2009 .

Validation and characterization of DNA microarray gene expression data distribution and associated moments

Sanjay Mehrotra, Luis de la Torre, Reuben Thomas, 2010, BMC Bioinformatics.

The Next Generation of Risk Assessment Multi-Year Study—Highlights of Findings, Applications to Risk Assessment, and Future Directions

Paul A. Schulte, Linda S. Birnbaum, Melvin E. Andersen, 2016, Environmental health perspectives.

A model-based optimization framework for the inference on gene regulatory networks from DNA array data

Sanjay Mehrotra, Vassily Hatzimanikatis, Eleftherios T. Papoutsakis, 2004, Bioinform..

A model-based optimization framework for the inference of regulatory interactions using time-course DNA microarray expression data

Sanjay Mehrotra, Vassily Hatzimanikatis, Eleftherios T. Papoutsakis, 2007, BMC Bioinformatics.

Genetic and environmental pathways to complex diseases

Allan Peter Davis, Carolyn J. Mattingly, Julia M. Gohlke, 2009, BMC Systems Biology.

Gene expression networks.

Reuben Thomas, Christopher J Portier, Reuben Thomas, 2013, Methods in molecular biology.

Features that define the best ChIP-seq peak calling algorithms

Katherine S. Pollard, Reuben Thomas, Sean Thomas, 2016, Briefings Bioinform..