Diana H. Taft

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Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E . coli in Necrotizing Enterocolitis and Mortality in Preterm Infants Graphical Abstract Highlights

Matthias Scholz, Nicola Segata, Ardythe L. Morrow, 2017 .

Transient Effect of Infant Formula Supplementation on the Intestinal Microbiota

D. Mills, S. Roberts, D. Hartigan-O’Connor, 2021, Nutrients.

Bifidobacterium Abundance in Early Infancy and Vaccine Response at 2 Years of Age

K. Kalanetra, M. Underwood, D. Mills, 2019, Pediatrics.

Association of Diet and Antimicrobial Resistance in Healthy U.S. Adults

Danielle G. Lemay, I. Korf, B. Durbin-Johnson, 2022, mBio.

The fecal resistome of dairy cattle is associated with diet during nursing

Danielle G. Lemay, Jinxin Liu, D. Mills, 2019, Nature Communications.

Bacterial colonization and antimicrobial resistance genes in neonatal enteral feeding tubes.

K. Kalanetra, M. Underwood, D. Mills, 2019, FEMS microbiology ecology.

Bifidobacterial Dominance of the Gut in Early Life and Acquisition of Antimicrobial Resistance

Jinxin Liu, D. Mills, D. Taft, 2018, mSphere.

X Chromosome Dose and Sex Bias in Autoimmune Diseases: Increased Prevalence of 47,XXX in Systemic Lupus Erythematosus and Sjögren's Syndrome

P. Gaffney, R. Jonsson, K. Siminovitch, 2015, Arthritis & rheumatology.

Maternal antibiotics disrupt microbiome, behavior, and temperature regulation in unexposed infant mice.

C. Wellman, D. Taft, G. Demas, 2022, Developmental psychobiology.

Antimicrobial Resistance Genes (ARGs), the Gut Microbiome, and Infant Nutrition

D. Taft, Diana H. Taft, R. Theophilus, 2023, Nutrients.

Early empiric antibiotic use in preterm infants is associated with lower bacterial diversity and higher relative abundance of Enterobacter.

D. Ward, K. Schibler, M. Altaye, 2014, The Journal of pediatrics.

Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes

Michelle L. Treiber, Diana H. Taft, David A. Mills, 2019, BMC Bioinformatics.

Genome-wide DNA methylation profiling reveals novel epigenetically regulated genes and non-coding RNAs in human testicular cancer

O. Rennert, W. Chan, H. Cheung, 2010, British Journal of Cancer.

Variability of indoor fungal microbiome of green and non-green low-income homes in Cincinnati, Ohio.

Tiina Reponen, Brett J Green, Jaroslaw Meller, 2018, The Science of the total environment.

Indole-3-lactic acid associated with Bifidobacterium-dominated microbiota significantly decreases inflammation in intestinal epithelial cells

C. Lebrilla, C. Slupsky, A. Pacheco, 2020, BMC microbiology.

Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants

N. Segata, Moreno Zolfo, Matthias Scholz, 2016, Cell reports.

Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants

Bo Wang, Michael A Kennedy, Curtis Huttenhower, 2013, Microbiome.

Bifidobacterium catabolism of human milk oligosaccharides overrides endogenous competitive exclusion driving colonization and protection

C. Slupsky, D. Tancredi, D. Mills, 2021, Gut microbes.

Probiotics and Human Milk Differentially Influence the Gut Microbiome and NEC Incidence in Preterm Pigs

B. Stoll, D. Burrin, D. Mills, 2023, Nutrients.

Center Variation in Intestinal Microbiota Prior to Late-Onset Sepsis in Preterm Infants

D. Ward, H. Deshmukh, K. Schibler, 2015, PloS one.

Flavonoids and the gastrointestinal tract: Local and systemic effects.

C. Fraga, P. Oteiza, D. Mills, 2018, Molecular aspects of medicine.

Maturation of the gut microbiome during the first year of life contributes to the protective farm effect on childhood asthma

M. Ege, P. Louis, A. Hyvärinen, 2020, Nature Medicine.

Milk oligosaccharide-driven persistence of Bifidobacterium pseudocatenulatum modulates local and systemic microbial metabolites upon synbiotic treatment in conventionally colonized mice

C. Slupsky, D. Mills, H. Raybould, 2023, Microbiome.

Neonatal Vitamin A Supplementation and Vitamin A Status Are Associated with Gut Microbiome Composition in Bangladeshi Infants in Early Infancy and at 2 Years of Age.

K. Kalanetra, M. Underwood, D. Mills, 2019, The Journal of nutrition.

A fast and robust protocol for metataxonomic analysis using RNAseq data

A. Porollo, D. Taft, P. Velayutham, 2017, Microbiome.

Association of Chorioamnionitis with Aberrant Neonatal Gut Colonization and Adverse Clinical Outcomes

K. Schibler, N. Ambalavanan, D. Taft, 2016, PloS one.

Bifidobacterium Species Colonization in Infancy: A Global Cross-Sectional Comparison by Population History of Breastfeeding

J. Dalphin, J. German, D. Tancredi, 2022, Nutrients.

Host Genotype, Intestinal Microbial Phenotype, and Late-Onset Sepsis in the Premature Infant

D. Taft, Diana H. Taft, 2014 .

Metagenomic Sequencing with Strain-Level Resolution Implicates Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants Preterm Infants

N. Segata, Moreno Zolfo, Matthias Scholz, 2021 .

Intestinal microbiota of preterm infants differ over time and between hospitals

D. Ward, K. Schibler, N. Ambalavanan, 2014, Microbiome.

A comparison of bacterial colonization between nasogastric and orogastric enteral feeding tubes in infants in the neonatal intensive care unit

K. Kalanetra, M. Underwood, D. Mills, 2022, Journal of Perinatology.

Effects of triclosan in breast milk on the infant fecal microbiome.

J. German, K. Kalanetra, B. Hammock, 2018, Chemosphere.

Immune Responsiveness to LPS Determines Risk of Childhood Wheeze and Asthma in 17q21 Risk Allele Carriers.

P. Louis, K. Kalanetra, D. Mills, 2021, American journal of respiratory and critical care medicine.