Shandar Ahmad

发表

Structural analysis of cation-pi interactions in DNA binding proteins.

M Michael Gromiha, M. Gromiha, Shandar Ahmad, 2004, International journal of biological macromolecules.

Sequence-dependence and prediction of nucleotide solvent accessibility in double stranded DNA.

Shandar Ahmad, Shandar Ahmad, 2009, Gene.

Look‐up tables for protein solvent accessibility prediction and nearest neighbor effect analysis

Jung-Ying Wang, M Michael Gromiha, Akinori Sarai, 2004, Biopolymers.

Classification of protein-DNA complexes based on structural descriptors.

Ponraj Prabakaran, M Michael Gromiha, Akinori Sarai, 2006, Structure.

Moment-based prediction of DNA-binding proteins.

Akinori Sarai, A. Sarai, Shandar Ahmad, 2004, Journal of molecular biology.

Distinct transcriptional regulatory modules underlie STAT3’s cell type-independent and cell type-specific functions

Diego Miranda-Saavedra, Diego Diez, Ralf Jauch, 2013, Nucleic acids research.

Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks

Kenji Mizuguchi, Akinori Sarai, K. Mizuguchi, 2009, BMC Structural Biology.

A molecular and in silico characterization of Hev b 4, a glycosylated latex allergen.

Adeel Malik, Shandar Ahmad, Siti Arija M Arif, 2008, International journal of biological macromolecules.

Pattern Recognition in Bioinformatics

Bertil Schmidt, Shandar Ahmad, Madhu Chetty, 2010, Pattern Recognit. Lett..

Residue propensities, discrimination and binding site prediction of adenine and guanine phosphates

Adeel Malik, Ahmad Firoz, Shandar Ahmad, 2011, BMC Biochemistry.

Prediction of DNA-binding sites in proteins using evolutionary profiles

Akinori Sarai, Shandar Ahmad, 2004 .

SVM‐Cabins: Prediction of solvent accessibility using accumulation cutoff set and support vector machine

Jung-Ying Wang, Hahn-Ming Lee, Jung-Ying Wang, 2007, Proteins.

Integrated Pathway Clusters with Coherent Biological Themes for Target Prioritisation

Kenji Mizuguchi, Lokesh P. Tripathi, Benoit H. Dessailly, 2014, PloS one.

1P207 Classification of Protein-DNA Complexes Based on Structural Descriptors(7. Nucleic acid binding protein,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

M. Michael Gromiha, Ponraj Prabakaran, Akinori Sarai, 2006 .

Role of non-covalent interactions for determining the folding rate of two-state proteins.

Makiko Suwa, M Michael Gromiha, M. Gromiha, 2004, Biophysical chemistry.

Protein–DNA interactions: structural, thermodynamic and clustering patterns of conserved residues in DNA-binding proteins

Ozlem Keskin, Ruth Nussinov, Akinori Sarai, 2008, Nucleic acids research.

Solvent accessibility in native and isolated domain environments: general features and implications to interface predictability.

Mohd Firdaus Raih, Rahmah Mohamed, Rong Zheng, 2005, Biophysical chemistry.

Databases and QSAR for Cancer Research

Adeel Malik, Shandar Ahmad, Munazah Andrabi, 2009 .

Novel approach for selecting the best predictor for identifying the binding sites in DNA binding proteins

R. Nagarajan, Shandar Ahmad, M. Michael Gromiha, 2013, Nucleic acids research.

Context dependent reference states of solvent accessibility derived from native protein structures and assessed by predictability analysis

Shandar Ahmad, Shandar Ahmad, Hemajit Singh, 2015 .

On nucleotide solvent accessibility in RNA structure.

Kenji Mizuguchi, Bratati Kahali, Tapash Chandra Ghosh, 2010, Gene.

Neural network-based prediction of transmembrane beta-strand segments in outer membrane proteins.

Makiko Suwa, M Michael Gromiha, M. Gromiha, 2004, Journal of computational chemistry.

Exploring the evolutionary rate differences of party hub and date hub proteins in Saccharomyces cerevisiae protein-protein interaction network.

Bratati Kahali, Tapash Chandra Ghosh, Bratati Kahali, 2009, Gene.

Atom-wise statistics and prediction of solvent accessibility in proteins.

M Michael Gromiha, Akinori Sarai, M. Gromiha, 2006, Biophysical chemistry.