Amir Vajdi

发表

Treatment-Induced Tumor Dormancy through YAP-Mediated Transcriptional Reprogramming of the Apoptotic Pathway.

Henry W. Long, R. Beroukhim, C. Paweletz, 2020, Cancer cell.

Intrinsic immunogenicity of small cell lung carcinoma revealed by its cellular plasticity.

C. Paweletz, M. Tolstorukov, E. V. Van Allen, 2021, Cancer discovery.

Plasticity in the Absence of NOTCH Uncovers a RUNX2-Dependent Pathway in Small Cell Lung Cancer

Kristen L. Jones, Kristen L Jones, M. Tolstorukov, 2021, Cancer Research.

Prediction of tumor mutation burden from H&E whole-slide images: a comparison of training strategies with convolutional neural networks

R. Cristescu, Tosha Shah, Amir Vajdi, 2022, Medical Imaging.

Regulation of neuroendocrine plasticity by the RNA-binding protein ZFP36L1

John G Doench, C. Rudin, M. Tolstorukov, 2021, Nature Communications.

Dynamic single-cell RNA sequencing identifies immunotherapy persister cells following PD-1 blockade.

C. Paweletz, P. Hammerman, P. Lizotte, 2020, The Journal of clinical investigation.

Cancer-associated fibroblasts are the main contributors to epithelial-to-mesenchymal signatures in the tumor microenvironment

J. L. Holloway, K. Ligon, M. Tolstorukov, 2023, Scientific Reports.

The Extracellular Milieu of Toxoplasma's Lytic Cycle Drives Lab Adaptation, Primarily by Transcriptional Reprogramming

Gabor T. Marth, G. Marth, A. Farrell, 2021, mSystems.

Diminished Ef ﬁ cacy of Programmed Death-(Ligand)1 Inhibition in STK11 - and KEAP1 -Mutant Lung Adenocarcinoma Is Affected by KRAS Mutation Status

S. Digumarthy, M. Tolstorukov, A. Cherniack, 2022 .

The germline factor DDX4 contributes to the chemoresistance of small cell lung cancer cells

D. Barbie, N. Ahsan, N. Tapinos, 2022, bioRxiv.

Diminished efficacy of PD-(L)1 inhibition in STK11- and KEAP1-mutant lung adenocarcinoma is impacted by KRAS mutation status.

S. Digumarthy, M. Tolstorukov, A. Cherniack, 2021, Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer.

The extracellular milieu of Toxoplasma’s lytic cycle drives lab-adaptation and promotes changes in lipid metabolism primarily driven by transcriptional reprogramming

Gabor T. Marth, G. Marth, A. Farrell, 2021, bioRxiv.

MET-Induced CD73 Restrains STING-Mediated Immunogenicity of EGFR-Mutant Lung Cancer

C. Paweletz, P. Janne, P. Lizotte, 2022, Cancer research.

Patch-DCA: Improved Protein Interface Prediction by utilizing Structural Information and Clustering DCA scores

Amir Vajdi, Kourosh Zarringhalam, Nurit Haspel, 2019, bioRxiv.

P14.26 Diminished Efficacy of PD-(L)1 Inhibition in STK11- and KEAP1-Mutant Lung Adenocarcinoma is Impacted by KRAS Mutation Status

S. Digumarthy, M. Tolstorukov, A. Cherniack, 2021 .

A new DP algorithm for comparing gene expression data using geometric similarity

Amir Vajdi, Nurit Haspel, Hadi Banaee, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Detecting chromosomal structural variation using jaccard distance and parallel architecture

Dan A. Simovici, Amir Vajdi, Nurit Haspel, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Integrating Co-Evolutionary Information in Monte Carlo Based Method for Proteins Trajectory Simulation

Arpita Joshi, Amir Vajdi, Nurit Haspel, 2019, BCB.