J. Aude

发表

Renal Transcriptomes: Segmental Analysis of Differential Expression

A. Doucet, J. Elalouf, L. Cheval, 2002, Nephron Experimental Nephrology.

Evolution of genes, evolution of species: the case of aminoacyl-tRNA synthetases.

Y. Diaz-Lazcoz, J. Risler, H. Chiapello, 1998, Molecular biology and evolution.

Genome-wide nucleosome specificity and function of chromatin remodellers in ES cells

Jean-Christophe Aude, Jean-François Deleuze, Robert Olaso, 2015, Nature.

Cadmium triggers an integrated reprogramming of the metabolism of Synechocystis PCC6803, under the control of the Slr1738 regulator

P. Legrain, M. Michaut, C. Cassier-Chauvat, 2007, BMC Genomics.

T-cell transcriptome analysis points up a thymic disorder in idiopathic nephrotic syndrome.

G. Deschênes, M. Alyanakian, A. Doucet, 2005, Kidney international.

The activity of the Synechocystis PCC6803 AbrB2 regulator of hydrogen production can be post-translationally controlled through glutathionylation

S. Lemaire, P. Decottignies, C. Cassier-Chauvat, 2013 .

Massive sequence comparisons as a help in annotating genomic sequences.

J. Risler, A. Louis, E. Ollivier, 2001, Genome research.

Inference of Synechocystis protein interaction network

H. Hermjakob, L. Montecchi-Palazzi, P. Legrain, 2008 .

Oct 4 interacts with subnucleosomal particles generated by Brg 1 at enhancers

F. Ochsenbein, N. Gilbert, C. Dulary, 2022 .

Importance of Post-translational Modifications in the Interaction of Proteins with Mineral Surfaces: The Case of Arginine Methylation and Silica surfaces.

J. Armengaud, J. Renault, J. Aude, 2018, Langmuir : the ACS journal of surfaces and colloids.

Inference and validation of Synechocystis protein interaction network using orthology

H. Hermjakob, L. Montecchi-Palazzi, P. Legrain, 2007 .

Genome-wide location analysis reveals a role for Sub1 in RNA polymerase III transcription

J. Acker, M. Michaut, R. Ferrari, 2009, Proceedings of the National Academy of Sciences.

An Incremental Algorithm for Z-value Computations

Jean-Christophe Aude, Alexandra Louis, A. Louis, 2002, Comput. Chem..

Protein Corona Composition of Silica Nanoparticles in Complex Media: Nanoparticle Size does not Matter

J. Armengaud, J. Renault, J. Aude, 2020, Nanomaterials.

A panoramic view of gene expression in the human kidney

Jean-Christophe Aude, Patrick Wincker, J. Weissenbach, 2003, Proceedings of the National Academy of Sciences of the United States of America.

From Protein Corona to Colloidal Self-Assembly: The Importance of Protein Size in Protein-Nanoparticle Interactions.

J. Mary, S. Hourdez, F. Cousin, 2020, Langmuir : the ACS journal of surfaces and colloids.

Combining Homologous Recombination and Phosphopeptide-binding Data to Predict the Impact of BRCA1 BRCT Variants on Cancer Risk

Jean-Christophe Aude, Etienne Rouleau, Sandrine M. Caputo, 2018, Molecular Cancer Research.

Balancing protein similarity and gene co-expression reveals new links between genetic conservation and developmental diversity in invertebrates

Céline Lefebvre, Christian Néri, Jean-Christophe Aude, 2005, Bioinform..

Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells

Jean-Christophe Aude, Céline Keime, Yad Ghavi-Helm, 2011, Nucleic acids research.

Endoplasmic reticulum is a major target of cadmium toxicity in yeast

Jean-Christophe Aude, Gilles Lagniel, Jean Labarre, 2010, Molecular microbiology.

Interferences of Silica Nanoparticles in Green Fluorescent Protein Folding Processes.

H. Pasquier, J. Renault, S. Devineau, 2016, Langmuir : the ACS journal of surfaces and colloids.

RNA-binding proteins are a major target of silica nanoparticles in cell extracts

J. Armengaud, M. Carrière, J. Renault, 2016, Nanotoxicology.

Genome-wide location analysis reveals a role of TFIIS in RNA polymerase III transcription.

J. Acker, P. Thuriaux, M. Michaut, 2008, Genes & development.

Mammalian Antioxidant Defenses Are Not Inducible by H2O2*

S. Luriau, J. Aude, G. Rousselet, 2004, Journal of Biological Chemistry.

Sulfur sparing in the yeast proteome in response to sulfur demand.

Michel Werner, A. Sentenac, M. Werner, 2002, Molecular cell.

Fundamentals of massive automatic pairwise alignments of protein sequences: theoretical significance of Z-value statistics

Olivier Bastien, Jean-Christophe Aude, Eric Maréchal, 2004, Bioinform..

InteroPORC: automated inference of highly conserved protein interaction networks

Henning Hermjakob, Magali Michaut, Samuel Kerrien, 2008, Bioinform..

Mining Biological Data Using Pyramids

Géraldine Polaillon, Magali Michaut, Jean-Christophe Aude, 2007 .

Structural Determinants for Protein adsorption/non-adsorption to Silica Surface

M. Mathon, J. Renault, S. Devineau, 2013, PloS one.

10 - Automatic Analysis of Large-scale Pairwise Alignments of Protein Sequences

Jean-Christophe Aude, Alain Hénaut, Jean-Jacques Codani, 1999 .

Significance of Z-value Statistics of Smith-Waterman Scores for Protein Alignments

Jean-Christophe Aude, Jean-Paul Comet, Alain Hénaut, 1999, Comput. Chem..

Protein-Nanoparticle interactions: What are the protein-corona thickness and organization?

F. Cousin, J. Renault, J. Aude, 2019, Langmuir : the ACS journal of surfaces and colloids.

Applications of the Pyramidal Clustering Method to Biological Objects

Jean-Christophe Aude, Jean-Loup Risler, Jean-Jacques Codani, 1999, Comput. Chem..

Dynamic properties of glucose complexity during the course of critical illness: a pilot study

Jean-Christophe Aude, Pierre Kalfon, Jean-Charles Preiser, 2019, Journal of Clinical Monitoring and Computing.

BRG1 generates subnucleosomes that expand OCT4 binding and function beyond DNA motifs at enhancers

J. Acker, F. Ochsenbein, N. Gilbert, 2023, bioRxiv.

A proteome scale study reveals how plastic surfaces and agitation promote protein aggregation

C. Henry, J. Renault, Aarón Millán-Oropeza, 2023, Scientific Reports.

Analyse des transcriptomes : Applications en physiologie et physiopathologie rénales

A. Doucet, J. Elalouf, L. Cheval, 2002 .

cBAF generates subnucleosomes that expand OCT4 binding and function beyond DNA motifs at enhancers.

N. Gilbert, C. Dulary, J. Aude, 2024, Nature structural & molecular biology.