B. D. Topçuoglu

发表

Long-term forest soil warming alters microbial communities in temperate forest soils

J. Blanchard, S. Frey, J. Melillo, 2015, Front. Microbiol..

HYDROGEN STRESS AND SYNTROPHY OF HYPERTHERMOPHILIC HETEROTROPHS AND METHANOGENS

B. D. Topçuoglu, 2018 .

Lower hydrogen flux leads to larger carbon isotopic fractionation of methane and biomarkers during hydrogenotrophic methanogenesis

D. LaRowe, S. Q. Lang, J. Holden, 2020 .

Seafloor Incubation Experiment with Deep-Sea Hydrothermal Vent Fluid Reveals Effect of Pressure and Lag Time on Autotrophic Microbial Communities

J. Vallino, B. Larson, J. Huber, 2020, Applied and Environmental Microbiology.

Women Are Underrepresented and Receive Differential Outcomes at ASM Journals: a Six-Year Retrospective Analysis

P. Schloss, H. Barton, B. D. Topçuoglu, 2020, mBio.

Experimental investigation on the controls of clumped isotopologue and hydrogen isotope ratios in microbial methane

M. Könneke, K. Hinrichs, Lucy C. Stewart, 2018, Geochimica et Cosmochimica Acta.

Fecal Short-Chain Fatty Acids Are Not Predictive of Colonic Tumor Status and Cannot Be Predicted Based on Bacterial Community Structure

Nicholas A. Lesniak, P. Schloss, M. Ruffin, 2019, mBio.

A Framework for Effective Application of Machine Learning to Microbiome-Based Classification Problems

Patrick D Schloss, Jenna Wiens, Mack T Ruffin, 2020, mBio.

1 A framework for effective application of machine learning to microbiome-1 based classification problems 2 3 4 5 6 Running title : Machine learning framework to model microbiome data 7 8 9 10 11

Nicholas A. Lesniak, J. Wiens, P. Schloss, 2020 .

A Framework for Effective Application of Machine Learning to Microbiome-Based Classification Problems

Jenna Wiens, Mack T. Ruffin, Begüm D. Topçuoğlu, 2019, mBio.

Hydrogen Limitation and Syntrophic Growth among Natural Assemblages of Thermophilic Methanogens at Deep-sea Hydrothermal Vents

H. Morrison, J. Huber, Lucy C. Stewart, 2016, Front. Microbiol..

Formate hydrogenlyase and formate secretion ameliorate H2 inhibition in the hyperthermophilic archaeon Thermococcus paralvinellae

Cem Meydan, J. Holden, B. D. Topçuoglu, 2017, Environmental microbiology.

Growth Kinetics, Carbon Isotope Fractionation, and Gene Expression in the Hyperthermophile Methanocaldococcus jannaschii during Hydrogen-Limited Growth and Interspecies Hydrogen Transfer

Cem Meydan, J. Holden, Tran B. Nguyen, 2019, Applied and Environmental Microbiology.

mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines

Jenna Wiens, Zena Lapp, Kelly L. Sovacool, 2021, J. Open Source Softw..

Vaccine Hyporesponse Induced by Individual Antibiotic Treatment in Mice and Non-Human Primates Is Diminished upon Recovery of the Gut Microbiome

Geoffrey D. Hannigan, D. Hazuda, C. White, 2021, Vaccines.

Vaccine Hyporesponse Induced by Individual Antibiotic Treatment in Mice and Non-Human Primates Is Diminished upon Recovery of the Gut Microbiome

Geoffrey D. Hannigan, D. Hazuda, C. White, 2021, bioRxiv.

A Goldilocks Principle for the Gut Microbiome: Taxonomic Resolution Matters for Microbiome-Based Classification of Colorectal Cancer

Courtney R. Armour, P. Schloss, B. D. Topçuoglu, 2021, bioRxiv.

Machine learning classification by fitting amplicon sequences to existing OTUs

Kelly L. Sovacool, J. Wiens, P. Schloss, 2023, bioRxiv.

Very early life microbiome and metabolome correlates with primary vaccination variability in children

M. Pichichero, K. Best, C. White, 2023, mSystems.

Extremophiles: Hot Environments ☆

J. Holden, B. D. Topçuoglu, 2019, Reference Module in Life Sciences.

Growth Kinetics, Carbon Isotope Fractionation, and Gene Expression in the Hyperthermophile Methanocaldococcus jannaschii during Hydrogen-Limited Growth and Interspecies Hydrogen Transfer

Cem Meydan, J. Holden, Tran B. Nguyen, 2019, Applied and Environmental Microbiology.