Raga Krishnakumar

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New candidates for regulated gene integrity revealed through precise mapping of integrative genetic elements

Corey M. Hudson, Britney Y. Lau, K. Williams, 2020, Nucleic acids research.

New candidates for regulated gene integrity revealed through precise mapping of integrative genetic elements

Corey M. Hudson, Britney Y. Lau, K. Williams, 2020, bioRxiv.

Gene editing and CRISPR in the clinic: current and future perspectives

Kimberly S. Butler, J. Timlin, J. Carney, 2020, Bioscience reports.

The histone variant macroH2A1 marks repressed autosomal chromatin, but protects a subset of its target genes from silencing.

W. Kraus, Raga Krishnakumar, Matthew J. Gamble, 2010, Genes & development.

FOXD3 Regulates Pluripotent Stem Cell Potential by Simultaneously Initiating and Repressing Enhancer Activity.

R. Blelloch, P. Labosky, M. Danial, 2016, Cell stem cell.

Tunable Intervalence Charge Transfer in Ruthenium Prussian Blue Analog Enables Stable and Efficient Biocompatible Artificial Synapses

Christopher H. Bennett, D. A. Robinson, M. Marinella, 2022, Advanced materials.

Extraction and biomolecular analysis of dermal interstitial fluid collected with hollow microneedles

Justin T. Baca, Anupama Sinha, Robert M. Taylor, 2018, Communications Biology.

The PARP side of the nucleus: molecular actions, physiological outcomes, and clinical targets.

W. Kraus, Raga Krishnakumar, 2010, Molecular cell.

GRHL2-Dependent Enhancer Switching Maintains a Pluripotent Stem Cell Transcriptional Subnetwork after Exit from Naive Pluripotency.

R. Blelloch, Brian DeVeale, Raga Krishnakumar, 2018, Cell stem cell.

Epigenetics of cellular reprogramming.

R. Blelloch, Raga Krishnakumar, 2013, Current opinion in genetics & development.

Systematic and stochastic influences on the performance of the MinION nanopore sequencer across a range of nucleotide bias

Sara W. Bird, Harrison S. Edwards, Anupama Sinha, 2018, Scientific Reports.

Two miRNA clusters reveal alternative paths in late-stage reprogramming.

Robert L. Judson, M. Oldham, R. Blelloch, 2014, Cell stem cell.

Dynamic reorganization of the AC16 cardiomyocyte transcriptome in response to TNFα signaling revealed by integrated genomic analyses

C. Danko, W. Kraus, Xin Luo, 2014, BMC Genomics.

Augmentation of Antibacterial Activity in Mesenchymal Stromal Cells Through Systems-Level Analysis and CRISPR-mediated Activation of CD14

Yooli K. Light, Kimberly S. Butler, M. Hirakawa, 2020, bioRxiv.

Expression of Alternative Ago2 Isoform Associated with Loss of microRNA-Driven Translational Repression in Mouse Oocytes

Matthew S. Cook, R. Blelloch, Raga Krishnakumar, 2018, Current Biology.

Real-Time Selective Sequencing with RUBRIC: Read Until with Basecall and Reference-Informed Criteria

Raga Krishnakumar, Anupama Sinha, Sara W. Bird, 2018, Scientific Reports.

Reciprocal Binding of PARP-1 and Histone H1 at Promoters Specifies Transcriptional Outcomes

W. Kraus, Raga Krishnakumar, Matthew J. Gamble, 2008, Science.

PARP-1 regulates chromatin structure and transcription through a KDM5B-dependent pathway.

W. Kraus, Raga Krishnakumar, 2010, Molecular cell.

Regulation of Poly(ADP-ribose) Polymerase-1-dependent Gene Expression through Promoter-directed Recruitment of a Nuclear NAD+ Synthase*

Jie Yao, W. Kraus, Raga Krishnakumar, 2012, The Journal of Biological Chemistry.

Global Analysis of Transcriptional Regulation by Poly(ADP-ribose) Polymerase-1 and Poly(ADP-ribose) Glycohydrolase in MCF-7 Human Breast Cancer Cells*♦

W. Kraus, A. Sauve, Raga Krishnakumar, 2009, The Journal of Biological Chemistry.

Regulation Of Chromatin Structre And Transcription By Poly(Adp-Ribose) Polymerase -1

Raga Krishnakumar, 2010 .

Upregulation of CD14 in mesenchymal stromal cells accelerates lipopolysaccharide-induced response and enhances antibacterial properties

Yooli K. Light, Kimberly S. Butler, M. Hirakawa, 2022, iScience.

High-Density Guide RNA Tiling and Machine Learning for Designing CRISPR Interference in Synechococcus sp. PCC 7002.

Anne M. Ruffing, Raga Krishnakumar, S. Kolker, 2023, ACS synthetic biology.

Enzymes in the NAD+ Salvage Pathway Regulate SIRT1 Activity at Target Gene Promoters*

W. Kraus, A. Sauve, Raga Krishnakumar, 2009, The Journal of Biological Chemistry.

OperonSEQer: A set of machine-learning algorithms with threshold voting for detection of operon pairs using short-read RNA-sequencing data

Anne M. Ruffing, Raga Krishnakumar, 2021, bioRxiv.

Extraction and biomolecular analysis of dermal interstitial fluid collected with hollow microneedles

Justin T. Baca, Robert M. Taylor, K. Williams, 2018, Communications Biology.

Systematic and stochastic influences on the performance of the MinION nanopore sequencer across a range of nucleotide bias

Raga Krishnakumar, Anupama Sinha, Sara W. Bird, 2018, Scientific Reports.

The PARP side of the nucleus: molecular actions, physiological outcomes, and clinical targets.

W. Kraus, Raga Krishnakumar, 2010, Molecular cell.

Two miRNA clusters reveal alternative paths in late-stage reprogramming.

Robert L. Judson, M. Oldham, R. Blelloch, 2014, Cell stem cell.

GRHL2-Dependent Enhancer Switching Maintains a Pluripotent Stem Cell Transcriptional Subnetwork after Exit from Naive Pluripotency.

R. Blelloch, Brian DeVeale, Raga Krishnakumar, 2018, Cell stem cell.

Membrane-localized neoantigens predict the efficacy of cancer immunotherapy

J. Hubbell, P. Siddarth, M. Swartz, 2023, Cell reports. Medicine.

How quantum computing can enhance biomarker discovery for multi-factorial diseases

F. Utro, N. Laanait, Raga Krishnakumar, 2024, 2411.10511.