Sri Rama Koti Ainavarapu

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Single-Molecule Studies of the Parallel Unfolding Pathways of Maltose Binding Protein (MBP)

Raghavan Varadarajan, Vasudha Aggarwal, S. Rajendra Kulothungan, 2011 .

Ligand binding modulates the mechanical stability of dihydrofolate reductase.

Julio M Fernandez, Lewyn Li, Lewyn Li, 2005, Biophysical journal.

Force-dependent chemical kinetics of disulfide bond reduction observed with single-molecule techniques.

Hector H. Huang, Arun P Wiita, Julio M Fernandez, 2006, Proceedings of the National Academy of Sciences of the United States of America.

Mechanical unfolding of ribose binding protein and its comparison with other periplasmic binding proteins.

S. Narayan, Sri Rama Koti Ainavarapu, Hema Chandra Kotamarthi, 2014, The journal of physical chemistry. B.

A new tension induction paradigm unravels tissue response and the importance of E-cadherin in the developing epidermis.

Sri Rama Koti Ainavarapu, M. Sonawane, V. Belapurkar, 2020, The International journal of developmental biology.

Insight into the Excitation-Dependent Fluorescence of Carbon Dots.

S. Narayan, S. Divya, D. Khushalani, 2019, Chemphyschem : a European journal of chemical physics and physical chemistry.

Variance of Atomic Coordinates as a Dynamical Metric to Distinguish Proteins and Protein-Protein Interactions in Molecular Dynamics Simulations.

R. Venkatramani, S. Paul, Sri Rama Koti Ainavarapu, 2020, The journal of physical chemistry. B.

Iterative cloning, overexpression, purification and isotopic labeling of an engineered dimer of a Ca(2+)-binding protein of the βγ-crystallin superfamily from Methanosarcina acetivorans.

K. Chary, Sri Rama Koti Ainavarapu, V. Ramanujam, 2012, Protein expression and purification.

Ca2+ Binding Enhanced Mechanical Stability of an Archaeal Crystallin

Sri Rama Koti Ainavarapu, Hema Chandra Kotamarthi, V. Ramanujam, 2014, PloS one.

Native Salt Bridges Are a Key Regulator of Ubiquitin's Mechanical Stability.

Tathagata Nandi, Sri Rama Koti Ainavarapu, 2022, The journal of physical chemistry. B.

Long-Range Charge Delocalization Mediates the Ultrafast Ligand-to-Metal Charge Transfer Dynamics at the Cu2+-Active Site in Azurin.

Sri Rama Koti Ainavarapu, J. Dasgupta, Soumyajit Mitra, 2022, The journal of physical chemistry. B.

Applications of atomic force microscopy in modern biology.

Tathagata Nandi, Sri Rama Koti Ainavarapu, 2021, Emerging topics in life sciences.

Characterization of unfolding mechanism of human lamin A Ig fold by single-molecule force spectroscopy-implications in EDMD.

D. Bhattacharyya, K. Sengupta, Sri Rama Koti Ainavarapu, 2014, Biochemistry.

Contour length and refolding rate of a small protein controlled by engineered disulfide bonds.

Hector H. Huang, Hui Lu, Hongbin Li, 2007, Biophysical journal.

Mechanical Softening of a Small Ubiquitin-Related Modifier Protein Due to Temperature Induced Flexibility at the Core.

Sri Rama Koti Ainavarapu, S. Bhattacharya, 2018, The journal of physical chemistry. B.

Experimental comparison of energy landscape features of ubiquitin family proteins

Anju Yadav, Tathagata Nandi, Sri Rama Koti Ainavarapu, 2020, Proteins.

Mechanical Unfolding Pathways of the Enhanced Yellow Fluorescent Protein Revealed by Single Molecule Force Spectroscopy*

R. Perez-Jimenez, S. Garcia-Manyes, Julio M. Fernandez, 2006, Journal of Biological Chemistry.

Ligand-modulated Parallel Mechanical Unfolding Pathways of Maltose-binding Proteins*

R. Varadarajan, M. Balamurali, S. Saranya, 2011, The Journal of Biological Chemistry.

Disruption of desmosome function leads to increased centrosome clustering in 14‐3‐3γ‐knockout cells with supernumerary centrosomes

S. Narayan, S. Dalal, Sarika Tilwani, 2021, FEBS letters.

Metal‐binding and circular permutation‐dependent thermodynamic and kinetic stability of azurin

Sri Rama Koti Ainavarapu, P. Yadav, Soumyajit Mitra, 2022, Proteins.

Preventing Disulfide Bond Formation Weakens Non-Covalent Forces among Lysozyme Aggregates

R. Swaminathan, Sri Rama Koti Ainavarapu, Hema Chandra Kotamarthi, 2014, PloS one.

Multiple unfolding pathways of leucine binding protein (LBP) probed by single-molecule force spectroscopy (SMFS).

S. Narayan, Sri Rama Koti Ainavarapu, Hema Chandra Kotamarthi, 2013, Journal of the American Chemical Society.

Force Spectroscopy of the Plasmodium falciparum Vaccine Candidate Circumsporozoite Protein Suggests a Mechanically Pliable Repeat Region*

Shobhona Sharma, Sri Rama Koti Ainavarapu, A. Patra, 2016, The Journal of Biological Chemistry.

Surface expressed Plasmodium circumsporozoite protein (CSP) modulates cellular flexibility and motility

Shobhona Sharma, S. Narayan, C. Dmello, 2021, bioRxiv.

Differences in the mechanical unfolding pathways of apo- and copper-bound azurins

R. Venkatramani, S. Paul, Anju Yadav, 2018, Scientific Reports.

Fingerprinting DHFR in single-molecule AFM studies.

Lewyn Li, Julio M. Fernandez, Sri Rama Koti Ainavarapu, 2006, Biophysical journal.

Significance of 1B and 2B domains in modulating elastic properties of lamin A

K. Sengupta, Sri Rama Koti Ainavarapu, Manindranath Bera, 2016, Scientific Reports.

An evolutionary non-conserved motif in Helicobacter pylori arginase mediates positioning of the loop containing the catalytic residue for catalysis.

S. Narayan, Mohit Mazumder, S. Gourinath, 2021, The Biochemical journal.

Multiple unfolding pathways of leucine binding protein (LBP) probed by single-molecule force spectroscopy (SMFS).

S. Narayan, Sri Rama Koti Ainavarapu, Hema Chandra Kotamarthi, 2013, Journal of the American Chemical Society.

Phase Separation and Aggregation of a Globular Folded Protein Small Ubiquitin-like Modifier 1 (SUMO1).

S. Maiti, Sri Rama Koti Ainavarapu, Debsankar Saha Roy, 2023, The journal of physical chemistry letters.

Rational Design of Protein-Specific Folding Modifiers.

S. Gosavi, Anirban Das, Anju Yadav, 2021, Journal of the American Chemical Society.

The unfolding transition state of ubiquitin with charged residues has higher energy than that with hydrophobic residues.

Tathagata Nandi, Sri Rama Koti Ainavarapu, Amogh Desai, 2020, Physical chemistry chemical physics : PCCP.

Mechanical Unfolding Studies on Single-Domain SUMO and Multi-Domain Periplasmic Binding Proteins

Sri Rama Koti Ainavarapu, Hema Chandra Kotamarthi, 2017 .

Protein engineering using circular permutation - structure, function, stability, and applications.

Sri Rama Koti Ainavarapu, Debanjana Das, 2024, The FEBS journal.