Shaoting Li

发表

Isolation and Identification of Quercetin Degrading Bacteria from Human Fecal Microbes

Yong Wang, Zhichao Zhang, Hua Wei, 2014, PloS one.

Implications of Mobile Genetic Elements for Salmonella enterica Single-Nucleotide Polymorphism Subtyping and Source Tracking Investigations

L. Baert, H. Carleton, L. Katz, 2019, Applied and Environmental Microbiology.

Microbiome-Informed Food Safety and Quality: Longitudinal Consistency and Cross-Sectional Distinctiveness of Retail Chicken Breast Microbiomes

Xiangyu Deng, R. Meinersmann, D. Mann, 2020, mSystems.

In vitro catabolism of quercetin by human fecal bacteria and the antioxidant capacity of its catabolites

Zhichao Zhang, Liu Liu, Hua Wei, 2014, Food & nutrition research.

Evaluation of real-time nanopore sequencing for Salmonella serotype prediction.

M. Wiedmann, Xiangyu Deng, Hao Luo, 2020, Food microbiology.

Zoonotic Source Attribution of Salmonella enterica Serotype

B. Bruce, P. McDermott, Shaohua Zhao, 2021 .

Salmonella enterica Serovar Typhimurium Isolates from Wild Birds in the United States Represent Distinct Lineages Defined by Bird Type

Xiangyu Deng, N. Shariat, E. Dudley, 2022, Applied and environmental microbiology.

Salmonella enterica serovar Typhimurium from Wild Birds in the United States Represent 1 Distinct Lineages Defined by Bird Type 2 3 Running title : S . Typhimurium lineages from U . S . wild birds 4 5

Xiangyu Deng, N. Shariat, E. Dudley, 2021 .

A quasimetagenomics method for concerted detection and subtyping of Salmonella enterica and E. coli O157:H7 from romaine lettuce.

Xiangyu Deng, D. Mann, Shaoting Li, 2020, Food microbiology.

Full-Length Transcriptomic Sequencing and Temporal Transcriptome Expression Profiling Analyses Offer Insights into Terpenoid Biosynthesis in Artemisia argyi

Wenjun Zhu, D. Wan, Shaoting Li, 2022, Molecules.

Integrative Assessment of Reduced Listeria monocytogenes Susceptibility to Benzalkonium Chloride in Produce Processing Environments

Xiangyu Deng, H. D. den Bakker, H. Oliver, 2022, Applied and environmental microbiology.

The Dissemination of Multidrug Resistant E. coli Harboring the Mobile Colistin Resistance Gene, mcr-1.1, on Transmissible Plasmids to the Mediterranean Sea.

Xiangyu Deng, I. Kassem, H. Jaafar, 2020, Journal of global antimicrobial resistance.

Salmonella Serotyping; Comparison of the Traditional Method to a Microarray-Based Method and an in silico Platform Using Whole Genome Sequencing Data

Xiangyu Deng, C. Barretto, A. Karczmarek, 2019, Front. Microbiol..

The Mobile Colistin Resistance Gene, mcr-1.1, Is Carried on IncX4 Plasmids in Multidrug Resistant E. coli Isolated from Rainbow Trout Aquaculture

Xiangyu Deng, I. Kassem, I. Saoud, 2020, Microorganisms.

Whole-Genome Sequencing Analysis of Salmonella Enterica Serotype Enteritidis Isolated from Poultry Sources in South Korea, 2010–2017

Xiangyu Deng, Chang-Seon Song, Dong‐Hun Lee, 2021, Pathogens.

Salmonella enterica and Escherichia coli in Wheat Flour: Detection and Serotyping by a Quasimetagenomic Approach Assisted by Magnetic Capture, Multiple-Displacement Amplification, and Real-Time Sequencing

Xiangyu Deng, H. D. den Bakker, F. Diez-Gonzalez, 2020, Applied and Environmental Microbiology.

Effects of dietary fibers and their mixtures on short chain fatty acids and microbiota in mice guts.

Liu Liu, Xichun Peng, Shaoting Li, 2013, Food & function.

SeqSero2: Rapid and Improved Salmonella Serotype Determination Using Whole-Genome Sequencing Data

Jessica C. Chen, P. Fields, Xiangyu Deng, 2019, Applied and Environmental Microbiology.

Zoonotic Source Attribution of Salmonella enterica Serotype Typhimurium Using Genomic Surveillance Data, United States

Beau B. Bruce, B. Bruce, P. McDermott, 2019, Emerging infectious diseases.

Salmonella enterica serovar Typhimurium from Wild Birds in the United States Represent Distinct Lineages Defined by Bird Type

Xiangyu Deng, N. Shariat, E. Dudley, 2021, bioRxiv.

Global spread of Salmonella Enteritidis via centralized sourcing and international trade of poultry breeding stocks

Xiangyu Deng, D. Mann, Shaoting Li, 2021, Nature Communications.

Lean rats gained more body weight than obese ones from a high-fibre diet

Yong Wang, S. Ou, Xichun Peng, 2015, British Journal of Nutrition.

Effect of rpoS on the survival and gene expression of Salmonella Enteritidis in low water activity foods

Weiying Xu, Shaoting Li, Hongmei Zhang, 2023, Journal of Food Safety.

Draft Genome Sequences of Multidrug-Resistant and mcr-1.1-Harboring Escherichia coli Isolated from Drinking and Well Waters Used in Syrian Refugee Camps

Xiangyu Deng, I. Kassem, D. Mann, 2021, Microbiology Resource Announcements.

Lean rats gained more body weight from a high-fructooligosaccharide diet.

S. Ou, Xichun Peng, Shaoting Li, 2015, Food & function.

Metabolomics-based response of Salmonella to desiccation stress and skimmed milk powder storage

Yuheng Yang, Shaoting Li, Hongmei Zhang, 2023, Frontiers in Microbiology.

Quasimetagenomics-Based and Real-Time-Sequencing-Aided Detection and Subtyping of Salmonella enterica from Food Samples

Yi Chen, Xiangyu Deng, Shaoting Li, 2017, Applied and Environmental Microbiology.

Effects of Aqueous Extracts and Essential Oil from Cinnamomum cassia on Rat Colonic Mucosal Morphology and Bacteroidales

Xichun Peng, Shaoting Li, Xiyang Wu, 2013 .

Draft genome sequences and resistome analysis of multidrug-resistant and mcr-1-harboring E. coli isolated from preharvest poultry in Lebanon.

Xiangyu Deng, I. Kassem, D. Mann, 2021, Journal of Global Antimicrobial Resistance.

Emergence of the Mobile Colistin Resistance Gene mcr-1 in Multidrug-Resistant Escherichia coli Isolated from the Fecal Matter of Toddlers in a Community

Xiangyu Deng, I. Kassem, D. Mann, 2021, Antimicrobial Agents and Chemotherapy.

Letter to the Editor: First Report of the Detection of the Plasmid-Borne Colistin Resistance Gene, mcr-1.26, in Multidrug-Resistant Escherichia coli Isolated from a Domesticated Pigeon.

Xiangyu Deng, I. Kassem, D. Mann, 2022, Microbial drug resistance.

Evaluation of nanopore sequencing technology to identify Salmonella enterica Choleraesuis var. Kunzendorf and Orion var. 15+, 34.

Xiangyu Deng, Hao Luo, R. Baker, 2021, International journal of food microbiology.

GC Content-Associated Sequencing Bias Caused by Library Preparation Method May Infrequently Affect Salmonella Serotype Prediction Using SeqSero2

Xiangyu Deng, Shaoting Li, Shaokang Zhang, 2020, Applied and Environmental Microbiology.

Impact of library preparation-induced low GC sequencing bias on Salmonella serotype prediction using SeqSero2

Xiangyu Deng, Shaoting Li, Shaokang Zhang, 2020, bioRxiv.

Evaluation of Nanopore sequencing technology to differentiate Salmonella serotypes and serotype variants with the same or closely related antigenic formulae

Xiangyu Deng, Hao Luo, R. Baker, 2020, bioRxiv.

Evaluation of Salmonella Serotype Prediction With Multiplex Nanopore Sequencing

M. Wiedmann, Xiangyu Deng, Hao Luo, 2021, Frontiers in Microbiology.

Subtyping Evaluation of Salmonella Enteritidis Using Single Nucleotide Polymorphism and Core Genome Multilocus Sequence Typing with Nanopore Reads

Xiangyu Deng, D. Mann, Shaoting Li, 2022, Applied and environmental microbiology.

The Response of Colonic Clostridium Cluster IV to Essential Oil and Aqueous Extract of Cinnamon Cassia in Rats

Xichun Peng, Shaoting Li, Long Chen, 2013 .

Continuously Ingesting Fructooligosaccharide Can't Maintain Rats' Gut Bifidobacterium at a High Level.

S. Ou, Xichun Peng, Shaoting Li, 2015, Journal of food science.

Draft Genome Sequences of Antibiotic-Resistant Serratia sp. Strains Isolated from Raw Sewage and Sediment Sludge in Georgia, USA

M. Esseili, Xiangyu Deng, I. Kassem, 2022, Microbiology resource announcements.

Genomic characterization of Salmonella isolated from retail chicken and humans with diarrhea in Qingdao, China

Xiangyu Deng, Shaoting Li, Wei Wang, 2023, Frontiers in microbiology.

Comparative genomics unveils extensive genomic variation between populations of Listeria species in natural and food-associated environments

M. Wiedmann, Xiangyu Deng, D. Weller, 2023, ISME communications.