Yang Yang

发表

MemBrain: An Easy-to-Use Online Webserver for Transmembrane Protein Structure Prediction

Hong-Bin Shen, Yang Yang, Hongbin Shen, 2018, Nano-micro letters.

Recent methodology progress of deep learning for RNA–protein interaction prediction

Hong-Bin Shen, Xiaoyong Pan, Yang Yang, 2019, Wiley interdisciplinary reviews. RNA.

CRIP: predicting circRNA – RBP-binding sites using a codon-based encoding and hybrid deep neural networks

Hongbin Shen, Xiaoyong Pan, Yang Yang, 2019 .

Topology prediction improvement of α-helical transmembrane proteins through helix-tail modeling and multiscale deep learning fusion.

Jing Yang, Hong-Bin Shen, Yang Yang, 2019, Journal of molecular biology.

Discovering nuclear targeting signal sequence through protein language learning and multivariate analysis.

Hong-Bin Shen, Yang Yang, Yun Guo, 2019, Analytical biochemistry.

CRIP: predicting circRNA–RBP-binding sites using a codon-based encoding and hybrid deep neural networks

Hong-Bin Shen, Yang Yang, Xiaoyong Pan, 2019, RNA.

Predicting circRNA-RBP interaction sites using a codon-based encoding and hybrid deep neural networks

Hong-Bin Shen, Yang Yang, Xiaoyong Pan, 2018, bioRxiv.

MemBrain: An Easy-to-Use Online Webserver for Transmembrane Protein Structure Prediction

Hongbin Shen, Xiao-lin Yin, Jing Yang, 2017, Nano-micro letters.

RBPsuite: RNA-protein binding sites prediction suite based on deep learning

Hongbin Shen, Xiaoyong Pan, Yang Yang, 2020, BMC Genomics.

SPREAD: A Fully Automated Toolkit for Single-Particle Cryogenic Electron Microscopy Data 3D Reconstruction with Image-Network-Aided Orientation Assignment

Hong-Bin Shen, Yang Yang, Yuxuan Chen, 2020, J. Chem. Inf. Model..

Clustering Enhancement of Noisy Cryo-Electron Microscopy Single-Particle Images with a Network Structural Similarity Metric

Hong-Bin Shen, Yang Yang, Shuo Yin, 2019, J. Chem. Inf. Model..

NCEM: Network structural similarity metric-based clustering for noisy cryo-EM single particle images

Yang Yang, Hong-Bin Shen, Biao Zhang, 2018, 2018 Chinese Automation Congress (CAC).

GraphLoc: a graph neural network model for predicting protein subcellular localization from immunohistochemistry images

Hongbin Shen, Yang Yang, Ying-Ying Xu, 2022, Bioinform..

Accurate inference of gene regulatory interactions from spatial gene expression with deep contrastive learning

Hong-Bin Shen, Yang Yang, Lujing Zheng, 2021, Bioinform..

Recognizing binding sites of poorly characterized RNA-binding proteins on circular RNAs using attention Siamese network

Hong-Bin Shen, Hehe Wu, Yang Yang, 2021, Briefings Bioinform..

Recent Progresses of Computational Analysis of RNA-Protein Interactions

Hongbin Shen, Xiaoyong Pan, Yang Yang, 2021 .

SIFLoc: a self-supervised pre-training method for enhancing the recognition of protein subcellular localization in immunofluorescence microscopic images

Hongbin Shen, Yang Yang, Houchao Lei, 2022, Briefings Bioinform..

Incorporating label correlations into deep neural networks to classify protein subcellular location patterns in immunohistochemistry images

Hongbin Shen, Yang Yang, Ying-Ying Xu, 2021, Proteins.

FlyIT: Drosophila Embryogenesis Image Annotation based on Image Tiling and Convolutional Neural Networks

Hong-Bin Shen, Yang Yang, Wei Long, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Decoding protein binding landscape on circular RNAs with base-resolution Transformer models

Hongbin Shen, Xiaoyong Pan, Yang Yang, 2022, bioRxiv.