Thomas Millat

发表

An explicit numerical scheme to efficiently simulate molecular diffusion in environments with dynamically changing barriers

O. Wolkenhauer, A. Uhrmacher, R. Jaster, 2015 .

Mathematical modelling of clostridial acetone-butanol-ethanol fermentation

K. Winzer, Thomas Millat, 2017, Applied Microbiology and Biotechnology.

Whole genome sequence and manual annotation of Clostridium autoethanogenum, an industrially relevant bacterium

Thomas Millat, Charlie Hodgman, Nigel P. Minton, 2015, BMC Genomics.

How mathematical modelling elucidates signalling in Bacillus subtilis

Ulf W. Liebal, O. Wolkenhauer, U. Völker, 2010, Molecular microbiology.

Genome‐scale model of C. autoethanogenum reveals optimal bioprocess conditions for high‐value chemical production from carbon monoxide

D. Fell, M. Poolman, C. Hodgman, 2019, Engineering Biology.

A genome-scale metabolic model of Cupriavidus necator H16 integrated with TraDIS and transcriptomic data reveals metabolic insights for biotechnological applications

D. Fell, Byung-Kwan Cho, M. Poolman, 2022, PLoS Comput. Biol..

Millat, Thomas and Winzer, Klaus (2017) Mathematical modelling of clostridial acetone-butanol-ethanol fermentation. Applied Microbiology and Biotechnology, 101 (6). pp. 2251-2271. ISSN 1432-0614

K. Winzer, Thomas Millat, 2017 .

Internal versus external conductivity of a dense plasma: many-particle theory and simulations.

I. Morozov, G. Röpke, H. Reinholz, 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.

Dynamic collision frequency for a two-component plasma

R. Redmer, G. Röpke, H. Reinholz, 2003 .

Coenzyme A-transferase-independent butyrate re-assimilation in Clostridium acetobutylicum—evidence from a mathematical model

O. Wolkenhauer, H. Bahl, K. Winzer, 2014, Applied Microbiology and Biotechnology.

How quantitative measures unravel design principles in multi-stage phosphorylation cascades.

Olaf Wolkenhauer, Stefan Hohmann, Thomas Millat, 2008, Journal of theoretical biology.

Whole genome sequence and manual annotation of Clostridium autoethanogenum, an industrially relevant bacterium

J. Blom, C. Hodgman, K. Winzer, 2015, BMC Genomics.

Gsmodutils: a python based framework for test-driven genome scale metabolic model development

Charlie Hodgman, Jamie Twycross, Rupert Norman, 2018, bioRxiv.

Integrative modelling of pH-dependent enzyme activity and transcriptomic regulation of the acetone–butanol–ethanol fermentation of Clostridium acetobutylicum in continuous culture

O. Wolkenhauer, H. Bahl, H. Janssen, 2013, Microbial biotechnology.

Progress towards platform chemical production using Clostridium autoethanogenum.

Thomas Millat, Charlie Hodgman, Klaus Winzer, 2018, Biochemical Society transactions.

Engineering improved ethylene production: Leveraging systems Biology and adaptive laboratory evolution.

P. Dalby, Dong-Hyun Kim, P. Maness, 2021, Metabolic engineering.

Proteolysis of beta-galactosidase following SigmaB activation in Bacillus subtilis.

Olaf Wolkenhauer, Uwe Völker, Thomas Millat, 2012, Molecular bioSystems.

Modeling of cellular processes: methods, data, and requirements.

Olaf Wolkenhauer, Thomas Millat, Hubert Bahl, 2011, Methods in molecular biology.

Dynamics of receptor and protein transducer homodimerisation

Olaf Wolkenhauer, Julio Vera, Walter Kolch, 2008, BMC Systems Biology.

Approximations and their consequences for dynamic modelling of signal transduction pathways.

Eric Bullinger, Olaf Wolkenhauer, Thomas Millat, 2007, Mathematical biosciences.

Simulations of stressosome activation emphasize allosteric interactions between RsbR and RsbT

Olaf Wolkenhauer, Thomas Millat, Ulf W. Liebal, 2013, BMC Systems Biology.

Physicochemical and metabolic constraints for thermodynamics-based stoichiometric modelling under mesophilic growth conditions

Dong-Hyun Kim, Claudio Tomi-Andrino, Rupert Norman, 2020, bioRxiv.

Physicochemical and metabolic constraints for thermodynamics-based stoichiometric modelling under mesophilic growth conditions

John R. King, Claudio Tomi-Andrino, Rupert Norman, 2020, bioRxiv.

A mathematical analysis of nuclear intensity dynamics for Mig1-GFP under consideration of bleaching effects and background noise in Saccharomyces cerevisiae.

Olaf Wolkenhauer, Mattias Goksör, Maria Smedh, 2011, Molecular bioSystems.

A shift in the dominant phenotype governs the pH-induced metabolic switch of Clostridium acetobutylicumin phosphate-limited continuous cultures

O. Wolkenhauer, H. Bahl, H. Janssen, 2013, Applied Microbiology and Biotechnology.

Inverse bremsstrahlung of hot, weakly coupled plasmas

R. Redmer, G. Röpke, H. Reinholz, 2001 .

The pH-induced Metabolic Shift from Acidogenesis to Solventogenesis in Clostridium acetobutylicum – From Experiments to Models

O. Wolkenhauer, H. Bahl, H. Janssen, 2013 .

A systems biology approach to investigate the effect of pH-induced gene regulation on solvent production by Clostridium acetobutylicum in continuous culture

Olaf Wolkenhauer, John R. King, Sara Jabbari, 2011, BMC Systems Biology.

Quantitative Bioreactor Monitoring of Intracellular Bacterial Metabolites in Clostridiumautoethanogenum Using Liquid Chromatography–Isotope Dilution Mass Spectrometry

K. Winzer, D. Barrett, Dong-Hyun Kim, 2021, ACS omega.

A shift in the dominant phenotype governs the pH-induced metabolic switch of Clostridium acetobutylicumin phosphate-limited continuous cultures

O. Wolkenhauer, H. Bahl, J. King, 2013, Applied Microbiology and Biotechnology.

Base editing enables duplex point mutagenesis in Clostridium autoethanogenum at the price of numerous off-target mutations

N. Minton, Christopher M. Humphreys, Thomas Millat, 2023, Frontiers in bioengineering and biotechnology.

The role of dynamic stimulation pattern in the analysis of bistable intracellular networks

Kwang-Hyun Cho, Olaf Wolkenhauer, Thomas Millat, 2008, Biosyst..

Assessing the impact of physicochemical parameters in the 2 predictive capabilities of thermodynamics-based stoichiometric 3 approaches under mesophilic and thermophilic conditions 4 5

K. Winzer, D. Barrett, Dong-Hyun Kim, 2022 .