J. Kypr

发表

Variations of the mononucleotide and short oligonucleotide distributions in the genomes of various organisms.

D Häring, J Kypr, D. Häring, 1999, Journal of theoretical biology.

Comparison of the solution and crystal conformations of (G + C)-rich fragments of DNA.

L. Arnold, T. Huynh-Dinh, J. A. Subirana, 1996, Biophysical journal.

Photochemical probing of the B--a conformational transition in a linearized pUC19 DNA and its polylinker region.

K. Nejedlý, J. Kypr, J. Chládková, 2007, Biophysical chemistry.

UV light-induced crosslinking of the strands of poly(dA-dT) and related alternating purine-pyrimidine DNAs.

Š. Pospíšilová, J. Kypr, M. Vorlíčková, 1994, Journal of biomolecular structure & dynamics.

Thymine methyl groups stabilize the putative A-form of the synthetic DNA poly(amino2dA-dT).

J. Kypr, M. Vorlíčková, J. Chládková, 1994, Biochemistry.

Mutual interactions of the phosphate groups in locally deformed backbones of various DNA double helices at high salt concentrations.

J. Kypr, J. Jursa, 1990, General physiology and biophysics.

Recognition and use of the unusual X-DNA as a primer-template by Klenow DNA polymerase enzyme.

J. Kypr, M. Vorlíčková, J. Sagi, 1989, Biochemical and biophysical research communications.

Poly(amino2dA-dT) isomerizes into the unusual X-DNA double helix at physiological conditions inducing Z-DNA in poly (dG-methyl5dC).

L. Otvos, J. Kypr, M. Vorlíčková, 1988, Journal of biomolecular structure & dynamics.

Salt-induced isomerization of a synthetic RNA poly[r(A-U)].

T. Jovin, J. Kypr, M. Vorlíčková, 1988, Biopolymers.

Aliphatic substituents in place of thymine methyl promote zig-zag character of the poly(dA-dT)·poly(dA-dT) backbone

V. Sklenar, J. Kypr, M. Vorlíčková, 1987 .

Salt-induced conformational changes of poly(dA-dT).

E. Paleček, J. Kypr, M. Vorlíčková, 1980, Nucleic acids research.

Guanine quadruplex formation by RNA/DNA hybrid analogs of Oxytricha telomere G(4)T(4)G(4) fragment.

J. Kypr, M. Vorlíčková, M. Fialová, 2008, Biopolymers.

Role of loops in the guanine quadruplex formation by DNA/RNA hybrid analogs of G4T4G4.

J. Kypr, M. Vorlíčková, M. Fialová, 2008, International journal of biological macromolecules.

Mutual backbone phosphate group interactions promote DNA double helix bending at high salt concentrations in solution.

J. Kypr, J. Jursa, 1991, General physiology and biophysics.

Factors influencing resistance of UV-irradiated DNA to the restriction endonuclease cleavage.

K. Nejedlý, E. Kejnovský, J. Kypr, 2004, International journal of biological macromolecules.

Vacuum-UV CD spectrum of the X-form of double-stranded poly(dA-dT)

W. C. Johnson, J. Kypr, M. Vorlíčková, 1994 .

Conformational transitions of poly(dA-dT)poly(dA-dT) in ethanolic solutions.

J. Šponar, J. Kypr, M. Vorlíčková, 1982, Nucleic acids research.

A Z-like form of poly(dA-dC).poly(dC-bT) in sotation?

J. Šponar, J. Kypr, M. Vorlíčková, 1982 .

A Z-like form of poly(dA-dC).poly(dG-dT) in solution?

J. Šponar, J. Kypr, M. Vorlíčková, 1982, Nucleic acids research.

Conformational variability of poly(dA-dT).poly(dA-dT) and some other deoxyribonucleic acids includes a novel type of double helix.

J. Kypr, M. Vorlíčková, 1985, Journal of biomolecular structure & dynamics.

Conformational transitions of a synthetic DNA poly(dA-dU). poly(dA-dU) in concentrated solutions of caesium fluoride

J. Kypr, M. Vorlíčková, 1984 .

N.m.r. and c.d. studies of the DNA fragments d(TATATATA) and d(TATATA) in solution.

A. Bax, G. Zon, V. Sklenar, 1989, International journal of biological macromolecules.

Intramolecular and intermolecular guanine quadruplexes of DNA in aqueous salt and ethanol solutions.

J. Kypr, M. Vorlíčková, I. Kejnovská, 2007, Biopolymers.

Sequence-dependent changes in the chiroptical properties of DNA upon interaction with dipyrandium.

J. Kypr, M. Vorlíčková, V. Kleinwächter, 1985, Biochimica et biophysica acta.

Tris buffer protects DNA backbone against breakage upon irradiation with ultraviolet light.

E. Kejnovský, J. Kypr, 1993, General physiology and biophysics.

UV light-induced crosslinking of short DNA duplex strands: nucleotide sequence preferences and a prominent role of the duplex ends.

L. Arnold, E. Kejnovský, J. Kypr, 1996, Journal of biomolecular structure & dynamics.

DNA extraction by zinc.

E. Kejnovský, J. Kypr, 1997, Nucleic acids research.

Salt-induced conformational transition of poly[d(A-T)] X poly[d(A-T)].

V. Sklenar, J. Kypr, M. Vorlíčková, 1983, Journal of molecular biology.

Nucleotide sequences flanking dinucleotide microsatellites in the human, mouse and Drosophila genomes.

J. Kypr, M. Matula, 1999, Journal of biomolecular structure & dynamics.

A part of codon bias in genes protects protein spatial structures from destabilization by random single point mutations.

J. Kypr, 1986, Biochemical and biophysical research communications.

Graphical analysis of circular dichroic spectra distinguishes between two-state and gradual alterations in DNA conformation.

J. Kypr, M. Vorlíčková, 1986, General physiology and biophysics.

NMR relaxation and the structure of a synthetic DNA poly(dA-dT).poly(dA-dT).

V. Sklenar, J. Kypr, M. Vorlíčková, 1986, General physiology and biophysics.

Conformations of alternating purine-pyrimidine DNAs in high-CsF solutions and their reversal by dipyrandium, ethidium and high temperature.

J. Kypr, M. Vorlíčková, 1985, Biochimica et biophysica acta.

The unusual X-form DNA in oligodeoxynucleotides: dependence of stability on the base sequence and length.

L. Arnold, J. Kypr, M. Vorlíčková, 1996, Journal of biomolecular structure & dynamics.

Escherichia coli genome is composed of two distinct types of nucleotide sequences.

D. Häring, J. Kypr, 2000, Biochemical and biophysical research communications.

DNA homoduplexes containing no pyrimidine nucleotide

J. Kypr, M. Vorlíčková, I. Kejnovská, 2003, European Biophysics Journal.

Circular dichroism and conformational polymorphism of DNA

Jaroslav Kypr, Iva Kejnovská, J. Kypr, 2009, Nucleic acids research.

Circular dichroism spectroscopy of conformers of (guanine + adenine) repeat strands of DNA.

J. Kypr, M. Vorlíčková, I. Kejnovská, 2003, Chirality.

Dimerization of the guanine-adenine repeat strands of DNA.

J. Kypr, M. Vorlíčková, I. Kejnovská, 1999, Nucleic acids research.

Towards a better understanding of the unusual conformations of the alternating guanine-adenine repeat strands of DNA.

J. Kypr, M. Vorlíčková, I. Kejnovská, 2007, Biopolymers.

Circular dichroism spectroscopy of DNA: from duplexes to quadruplexes.

Jaroslav Kypr, Iva Kejnovská, J. Kypr, 2012, Chirality.

Different intrastrand and interstrand contributions to stacking account for roll variations at the alternating purine-pyrimidine sequences in A-DNA and A-RNA.

J. Šponer, J. Kypr, 1991, Journal of molecular biology.

Theoretical analysis of the base stacking in DNA: choice of the force field and a comparison with the oligonucleotide crystal structures.

J. Šponer, J Kypr, J. Kypr, 1993, Journal of biomolecular structure & dynamics.

Unusual contribution of 2-aminoadenine to the thermostability of DNA.

J. Kypr, M. Vorlíčková, J. Sagi, 1996, Journal of biomolecular structure & dynamics.

Destabilization of the duplex and the high-salt Z-form of poly(dG-methyl5dC) by substitution of ethyl for the 5-methyl group.

J. Kypr, M. Vorlíčková, J. Sagi, 1991, International journal of biological macromolecules.

Oligo(dT) is not a correct native PAGE marker for single-stranded DNA.

J. Kypr, M. Vorlíčková, I. Kejnovská, 2007, Biochemical and biophysical research communications.

Probing conformational isomerizations of double-stranded poly(dA-dT) by a substitution of minor amounts of the thymine methyls with bulky hydrophobic isopropyl groups.

J. Kypr, M. Vorlíčková, J. Chládková, 1994, Journal of biomolecular structure & dynamics.

Circular dichroism spectroscopy analysis of conformational transitions of a 54 base pair DNA duplex composed of alternating CGCGCG and TATATA blocks.

J. Kypr, M. Vorlíčková, J. Chládková, 1999, Biospectroscopy.

Structures of poly(dA-dT, ip5dU) containing various small amounts of the antiherpetic 5-isopropyl-2'-deoxyuridine.

A. Španová, J. Kypr, M. Vorlíčková, 1992, Biochemical and biophysical research communications.

Mapping the B-A conformational transition along plasmid DNA

Jaroslav Kypr, Karel Nejedlý, K. Nejedlý, 2005, Nucleic acids research.

The thrombin binding aptamer GGTTGGTGTGGTTGG forms a bimolecular guanine tetraplex.

Jaroslav Kypr, Markéta Fialová, J. Kypr, 2006, Biochemical and biophysical research communications.

Conformational isomerizations of poly(dA-dT) are dramatically influenced by a substitution of a minor amount of adenine by purine or amino2purine.

J. Kypr, M. Vorlíčková, J. Sagi, 1993, Journal of biomolecular structure & dynamics.

Correlations and anticorrelations among nucleotide distributions along the genomes of various organisms.

D. Häring, J. Kypr, 1999, Journal of biomolecular structure & dynamics.

The Longest (A+T) and (G+C) Blocks in the Human and Other Genomes

J. Kypr, Iva Hrabcová, 2008, Journal of biomolecular structure & dynamics.

Biased distribution of adenine and thymine in gene nucleotide sequences

Jan Mrázek, Jaroslav Kypr, J. Mrázek, 1994, Journal of Molecular Evolution.

No isochores in the human chromosomes 21 and 22?

D Häring, J Kypr, D. Häring, 2001, Biochemical and biophysical research communications.

Middle-range clustering of nucleotides in genomes

J. Mrazek, J. Kypr, J. Mrázek, 1995, Comput. Appl. Biosci..

Nucleotide composition bias and CpG dinucleotide content in the genomes of HIV and HTLV 1/2.

J. Mrázek, J Kypr, J Mrázek, 1989, Biochimica et biophysica acta.

Circular dichroism and guanine quadruplexes.

J. Kypr, M. Vorlíčková, J. Motlová, 2012, Methods.

Millimolar concentrations of zinc and other metal cations cause sedimentation of DNA.

E. Kejnovský, J. Kypr, 1998, Nucleic acids research.

Invariant and Variable Base Stacking Geometries in B-DNA and A-DNA

J. Kypr, S. Neugebauerová, Svatava Neugebauerová, 2000, Journal of biomolecular structure & dynamics.

Guanine tetraplex topology of human telomere DNA is governed by the number of (TTAGGG) repeats

J. Kypr, M. Vorlíčková, J. Chládková, 2005, Nucleic acids research.

Ethanol is a better inducer of DNA guanine tetraplexes than potassium cations

J. Kypr, M. Vorlíčková, K. Bednářová, 2006, Biopolymers.

Unusual codon usage of HIV

J. Mrázek, J. Kypr, 1987, Nature.

Tertiary structures of the Escherichia coli and human chromosome 21 molecules of DNA.

J. Kypr, P. Hanzálek, P. Hanzálek, 2001, Biochemical and biophysical research communications.

Structural polymorphism of d(GA.TC)n DNA sequences. Intramolecular and intermolecular associations of the individual strands.

J. Casasnovas, F. Azorín, D. Huertas, 1993, Journal of molecular biology.

UV Light‐induced Duplex‐to‐duplex Crosslinking of DNA Molecules in Aqueous Ethanol Solutions

J. Kypr, Šárka PospíŠlová, 1998, Photochemistry and photobiology.

Lambda phage protein Nu 1 contains the conserved DNA binding fold of repressors.

J. Mrázek, J. Kypr, 1986, Journal of molecular biology.

An A-type double helix of DNA having B-type puckering of the deoxyribose rings.

R. Stefl, J. Koča, V. Sklenar, 2000, Journal of molecular biology.

Computer simulation of DNA supercoiling in a simple elastomechanical approximation

J. Kypr, P. Selepova, 1985, Biopolymers.

Pseudogene in the genome of bacteriophage lambda?

J. Mrázek, J. Kypr, 1987, Biochemical and biophysical research communications.

Factors Influencing Dna Expansion in the Course of Polymerase Chain Reaction

J. Kypr, J. Vondrusková, Nad'a Parízková, 2007, Nucleosides, nucleotides & nucleic acids.

Conformational properties of DNA fragments containing GAC trinucleotide repeats associated with skeletal displasias

J. Kypr, M. Vorlíčková, I. Kejnovská, 2001, European Biophysics Journal.

Occurrence of nucleotide triplets in genes and secondary structure of the coded proteins

Jan Mrázek, Jaroslav Kypr, J. Mrázek, 1987 .

Conformational properties of DNA containing (CCA)n and (TGG)n trinucleotide repeats.

J. Kypr, M. Vorlíčková, M. Zemánek, 2005, International journal of biological macromolecules.

Conformations of DNA strands containing GAGT, GACA, or GAGC tetranucleotide repeats.

J. Kypr, M. Vorlíčková, I. Kejnovská, 2007, Biopolymers.

Conformational properties of DNA strands containing guanine-adenine and thymine-adenine repeats.

J. Kypr, M. Vorlíčková, I. Kejnovská, 1998, Nucleic acids research.

Genomic DNA regions whose complementary strands are prone to UV light-induced crosslinking.

K. Nejedlý, J. Kypr, R. Kittner, 2001, Archives of biochemistry and biophysics.

Crosslinking of the complementary strands of DNA by UV light: dependence on the oligonucleotide composition of the UV irradiated DNA.

Š. Pospíšilová, K. Nejedlý, J. Kypr, 2001, Biochimica et biophysica acta.

Thermal melting of poly(dA-dT).poly(dA-dT) in methanol-water solutions.

J. Kypr, M. Vorlíčková, 1984, Biochemical and biophysical research communications.

UNIREP: a microcomputer program to find unique and repetitive nucleotide sequences in genomes

Jan Mrázek, Jaroslav Kypr, J. Mrázek, 1993, Comput. Appl. Biosci..

Caesium fluoride-induced changes in the c.d. spectra of synthetic DNA fragments.

G. Zon, L. Arnold, J. Kypr, 1991, International journal of biological macromolecules.

CD of the synthetic RNA duplexes poly[r(A‐T)] and poly[r(A‐U)] in salt and ethanolic solutions

M. Planck, T. Jovin, J. Kypr, 1990, Biopolymers.

Different behavior of the octadeoxynucleotides d(A-T)4 and d(T-A)4 at high concentrations of cesium fluoride.

J. Kypr, M. Vorlíčková, E. Birch-Hirschfeld, 1986, Biochemical and biophysical research communications.

RNA-like conformational properties of a synthetic DNA poly(dA-dU).poly(dA-dU).

J. Kypr, M. Vorlíčková, 1985, Biochemical and biophysical research communications.

Experiment acknowledged the Watson-Crick hypothesis: a review of B-DNA double helix structural features at atomic resolution.

J. Kypr, M. Vorlíčková, 1985, General physiology and biophysics.

CIRCULAR DICHROISM SPECTROSCOPY OF NUCLEIC ACIDS

J. Kypr, M. Vorlíčková, I. Kejnovská, 2012 .

Strange double helix of poly (dA-dT) in high-salt solution.

V. Sklenar, M. Buděšínský, J. Kypr, 1981, Biochemical and biophysical research communications.

Close mutual contacts of the amino groups in DNA.

J. Šponer, J. Kypr, 1994, International journal of biological macromolecules.

Aqueous trifluorethanol solutions simulate the environment of DNA in the crystalline state.

J. Kypr, M. Vorlíčková, J. Chládková, 1999, Nucleic acids research.

Conformational properties of DNA dodecamers containing four tandem repeats of the CNG triplets.

P. Fojtík, J. Kypr, M. Vorlíčková, 1998, Nucleic acids research.

CGG repeats associated with fragile X chromosome form left-handed Z-DNA structure.

J. Kypr, M. Vorlíčková, D. Renčiuk, 2011, Biopolymers.

DNA in phosphorus atom representation: the heteronomous double helices of poly(dA).poly(dT) and poly(dG).poly(dC) and simulation of the yeast genome and of a human chromosome DNA.

J. Kypr, P. Hanzálek, P. Hanzálek, 2005, Journal of theoretical biology.

A-like guanine-guanine stacking in the aqueous DNA duplex of d(GGGGCCCC).

R. Stefl, J. Koča, V. Sklenar, 2001, Journal of molecular biology.

Relationships among rise, cup, roll and stagger in DNA suggested by empirical potential studies of base stacking.

J. Šponer, J. Kypr, 1993, Journal of biomolecular structure & dynamics.

Characterization of the base stacking interactions in DNA by means of Lennard-Jones empirical potentials.

J. Šponer, J. Kypr, 1989, General physiology and biophysics.

Circular dichroism spectroscopy reveals invariant conformation of guanine runs in DNA.

J. Kypr, M. Vorlíčková, 2002, Biopolymers.

Genomic occurrence of microsatellites containing integral and non-integral repeat numbers.

J. Kypr, Iva Hrabcová, 2003, Biochemical and biophysical research communications.

Dimethylsulfoxide-stabilized conformer of guanine-adenine repeat strand of DNA.

J. Kypr, M. Vorlíčková, 2001, Biopolymers.

Possible reason for the preferential insertion of adenine opposite abasic lesions in DNA.

J. Kypr, 1988, Journal of theoretical biology.

Resistance of native protein shapes to random single point mutations in their genes.

J. Kypr, 1990, Journal of Theoretical Biology.

Phosphorus nmr spectra of natural DNA fragments in the course of the B‐to‐A conformational transition

V. Sklenar, J. Kypr, Jaroslav Kypr, 1986, Biopolymers.

Base pair buckling can eliminate the interstrand purine clash at the CpG steps in B-DNA caused by the base pair propeller twisting.

J. Šponer, J. Kypr, 1990, Journal of biomolecular structure & dynamics.

A fast computer algorithm for finding an optimum geometrical interaction of two macromolecules

Jaroslav Kypr, Martin Šantavý, J. Kypr, 1984 .

Circular dichroism and guanine quadruplexes.

J. Kypr, M. Vorlíčková, J. Motlová, 2012, Methods.

Conserved guanine-guanine stacking in tetraplex and duplex DNA

J. Kypr, M. Vorlíčková, J. Chládková, 2001, European Biophysics Journal.