Yuefan Deng

发表

Multiscale Particle-Based Modeling of Flowing Platelets in Blood Plasma Using Dissipative Particle Dynamics and Coarse Grained Molecular Dynamics

Peng Zhang, Yuefan Deng, Danny Bluestein, 2014, Cellular and molecular bioengineering.

Parallel Simulated Annealing by Mixing of StatesKing

John, Yuefan Deng, -. W. Chu, 2007 .

A Multiscale Model for Recruitment Aggregation of Platelets by Correlating with In Vitro Results

Prachi Gupta, D. Bluestein, Peng Zhang, 2019, Cellular and Molecular Bioengineering.

Particle-Based Methods for Multiscale Modeling of Blood Flow in the Circulation and in Devices: Challenges and Future Directions

Yuefan Deng, Danny Bluestein, Takuji Ishikawa, 2010, Annals of Biomedical Engineering.

A predictive multiscale model for simulating flow-induced platelet activation: Correlating in silico results with in vitro results.

S. Einav, M. Slepian, D. Bluestein, 2021, Journal of biomechanics.

Hpcu '99 New Trends in High Performance Computing Annual Conference for Vendor-independent Hpc Users Group Conference Program Conference Organizers and Committees General Chairs Conference Chair Program Chair Local Organizers Is Hpc Platform Portability a Fallacy? 2:30 Calculating Radiative Heat Tra

J. Dongarra, O. Yasar, R. E. Tuzun, 2007 .

Eigenvalues and eigenfunctions of the Hckel Hamiltonian for carbon-60

Yuefan Deng, N. Yang, 1992 .

Scalable multiscale modeling of platelets with 100 million particles

J. Kozloski, Peng Zhang, Yuefan Deng, 2022, The Journal of Supercomputing.

Analysis of multi-scale molecular dynamics algorithms for simulating biomolecules

Yuefan Deng, Guowen Han, 2006 .

A New Record of Graph Enumeration Enabled by Parallel Processing

Yuefan Deng, Zhipeng Xu, Xiaolong Huang, 2019, Mathematics.

Multiscale Modeling of Blood Flow-Mediated Platelet Thrombosis

M. Slepian, A. Yazdani, D. Bluestein, 2020, Handbook of Materials Modeling.

Supervised machine learning approach to molecular dynamics forecast of SARS-CoV-2 spike glycoproteins at varying temperatures

M. Rafailovich, Peng Zhang, Yuefan Deng, 2021, MRS Advances.

Task Mapping on Supercomputer with Cellular Network

Yuefan Deng, Yongzhi Chen, 2007 .

Multiscale Particle-Based Modeling of Flowing Platelets in Blood Plasma Using Dissipative Particle Dynamics and Coarse Grained Molecular Dynamics

M. Slepian, D. Bluestein, Peng Zhang, 2014, Cellular and Molecular Bioengineering.

Viscous flow simulation in a stenosis model using discrete particle dynamics: a comparison between DPD and CFD

M. Xenos, W. Kang, D. Bluestein, 2011, Biomechanics and Modeling in Mechanobiology.

A phenomenological particle‐based platelet model for simulating filopodia formation during early activation

Peng Zhang, Yuefan Deng, Danny Bluestein, 2015, International journal for numerical methods in biomedical engineering.

The energy density and pressure in SU(3) lattice gauge theory at finite temperature

Yuefan Deng, 1989 .

Reducing the effects of compressibility in DPD-based blood flow simulations through severe stenotic microchannels

Chao Gao, Peng Zhang, Yuefan Deng, 2017, J. Comput. Phys..

Long-time molecular dynamics simulations of botulinum biotoxin type-A at different pH values and temperatures

Yuefan Deng, Xin Chen, 2007, Journal of molecular modeling.

Scalability Test of multiscale fluid-platelet model for three top supercomputers

Li Zhang, Na Zhang, Chao Gao, 2016, Comput. Phys. Commun..

In Vitro Measurements of Shear-Mediated Platelet Adhesion Kinematics as Analyzed through Machine Learning

D. Bluestein, Peng Zhang, Yuefan Deng, 2021, Annals of Biomedical Engineering.

Online Machine Learning for Accelerating Molecular Dynamics Modeling of Cells

Peng Zhang, Yuefan Deng, Chih-Chieh Yang, 2022, Frontiers in Molecular Biosciences.

Molecular Dynamics Modeling of the SARS-CoV-2 Spike Protein at PH2 Through PH11.5

M. Rafailovich, M. Simon, Peng Zhang, 2021 .

Modeling of the thermal properties of SARS-CoV-2 S-protein

M. Rafailovich, M. Simon, Peng Zhang, 2021, Frontiers in Molecular Biosciences.

A fine grained parallel smooth particle mesh Ewald algorithm for biophysical simulation studies: Application to the 6-D torus QCDOC supercomputer

Bin Fang, Yuefan Deng, Glenn J. Martyna, 2007, Comput. Phys. Commun..

Parallel Particle Simulations of Thin-Film Deposition

Yuefan Deng, R. Alan McCoy, Yuefan Deng, 1999, Int. J. High Perform. Comput. Appl..

Viscous flow simulation in a stenosis model using discrete particle dynamics: a comparison between DPD and CFD

Yuefan Deng, Danny Bluestein, Michalis Xenos, 2012, Biomechanics and modeling in mechanobiology.

Prediction of Protein Binding to DNA in the Presence of Water-Mediated Hydrogen Bonds

J. Glimm, Y. Wang, A. Grollman, 1999 .

Parallel Simulated Annealing by Mixing of States

Yuefan Deng, John Reinitz, King-Wai Chu, 1999 .

AGKD-BML: Defense Against Adversarial Attack by Attention Guided Knowledge Distillation and Bi-directional Metric Learning pdf

Haibin Ling, Yuefan Deng, Shinjae Yoo, 2021, 2021 IEEE/CVF International Conference on Computer Vision (ICCV).

Simulations of a specific inhibitor of the dishevelled PDZ domain

Yuefan Deng, Xin Chen, 2009, Journal of molecular modeling.

Parallel embedded-atom method simulations with delayed electron density approximations

Yuefan Deng, R.Alan McCoy, Yuefan Deng, 1997 .

Artificial intelligence for accelerating time integrations in multiscale modeling

Guojing Cong, Yuefan Deng, Danny Bluestein, 2020, J. Comput. Phys..

Error and timing analysis of multiple time-step integration methods for molecular dynamics

Yuefan Deng, James Glimm, Glenn J. Martyna, 2007, Comput. Phys. Commun..

Optimal low-latency network topologies for cluster performance enhancement

Alexandre F. Ramos, Yuefan Deng, Meng Guo, 2020, The Journal of Supercomputing.

Optimal low-latency network topologies for cluster performance enhancement

Weifeng Liu, Yuefan Deng, Meng Guo, 2019, The Journal of Supercomputing.

Optimal Routing for a Family of Scalable Interconnection Networks

Yuefan Deng, Zhipeng Xu, Xiaolong Huang, 2019, ArXiv.

Load-balanced Routing for Nested Interconnection Networks

Yuefan Deng, Zhipeng Xu, Xiaolong Huang, 2019, 1909.06497.

Symmetry-guided design of topologies for supercomputer networks pdf

Yuefan Deng, Alexandre F. Ramos, Alexandre F. Ramos, 2017, International Journal of Modern Physics C.

Evaluation of Various Networks Configurated by Adding Bypass or Torus Links

Peng Zhang, Yuefan Deng, Rui Feng, 2015, IEEE Transactions on Parallel and Distributed Systems.

Interlacing Bypass Rings to Torus Networks for More Efficient Networks

Peng Zhang, Yuefan Deng, Reid Powell, 2011, IEEE Transactions on Parallel and Distributed Systems.

Applying Simulated Annealing and Parallel Computing to the Mobile Sequential Recommendation

Yuefan Deng, Yong Ge, Keli Xiao, 2019, IEEE Transactions on Knowledge and Data Engineering.

Performance of the 3D FFT on the 6D network torus QCDOC parallel supercomputer

Bin Fang, Yuefan Deng, Glenn J. Martyna, 2007, Comput. Phys. Commun..

Perspectives on parallel computing

James Glimm, Yuefan Deng, David H. Sharp, 1993 .

Creating interconnect topologies by algorithmic edge removal: MOD and SMOD graphs

Lukasz Orlowski, Yuefan Deng, Marek T. Michalewicz, 2015, Supercomput. Front. Innov..

An efficient parallel implementation of the smooth particle mesh Ewald method for molecular dynamics simulations

Yuefan Deng, Kwang Jin Oh, Yuefan Deng, 2007, Comput. Phys. Commun..

Clustering kinetics of granular media in three dimensions

Y. Tu, Shiyi Chen, X. Nie, 1998, cond-mat/9804235.

A LATTICE BGK MODEL FOR VISCOELASTIC MEDIA

Yuefan Deng, Yue-Hong Qian, Y. Qian, 1997 .

A Structured Table of Graphs with Symmetries and Other Special Properties

Yuefan Deng, Zhipeng Xu, Xiaolong Huang, 2019, Symmetry.

A Structured Table of Graphs with Special Properties pdf

Yidan Zhang, Yuefan Deng, Zhipeng Xu, 2019, ArXiv.

An Adaptive Load Balancing Method for Parallel Molecular Dynamics Simulations

Yuefan Deng, Carlos Rivera, Ronald F. Peierls, 2000 .

A multiscale biomechanical model of platelets: Correlating with in-vitro results.

Peng Zhang, Yuefan Deng, Danny Bluestein, 2017, Journal of biomechanics.

A multiple time stepping algorithm for efficient multiscale modeling of platelets flowing in blood plasma

Na Zhang, Peng Zhang, Yuefan Deng, 2015, J. Comput. Phys..

Numerical Solutions of a Nonlinear Evolution System with Small Dissipation on Parallel Processors

Yuefan Deng, Chung-Chiang Chou, Yuefan Deng, 1998, J. Sci. Comput..

Optimal circulant graphs as low-latency network topologies pdf

Xiaolong Huang, Alexandre F. Ramos, Yuefan Deng, 2022, The Journal of Supercomputing.

Performance Models on QCDOC for Molecular Dynamics with Coulomb Potentials

Yuefan Deng, X. Cai, James Glimm, 2004, Int. J. High Perform. Comput. Appl..

AI-aided multiscale modeling of physiologically-significant blood clots

J. Kozloski, Peng Zhang, Yuefan Deng, 2022, Comput. Phys. Commun..

Enabling AI-Accelerated Multiscale Modeling of Thrombogenesis at Millisecond and Molecular Resolutions on Supercomputers

Peng Zhang, Yuefan Deng, Changnian Han, 2021, ISC.

Modeling Social Attention for Stock Analysis: An Influence Propagation Perspective

Qi Liu, Li Zhang, Yuefan Deng, 2015, 2015 IEEE International Conference on Data Mining.

Efficient Parallel Radiosity for Terascale Applications

Yuefan Deng, Hua Zhang, Lei Ming, 2008, 2008 International Conference on Computer Science and Software Engineering.

Parallelizing Strassen's method for matrix multiplication on distributed-memory MIMD architectures☆

Yuefan Deng, Chung-Chiang Chou, Y. Wang, 1995 .

Investigation of Simulated Annealing Cooling Schedule for Mobile Recommendations

Yuefan Deng, Keli Xiao, Zeyang Ye, 2015, 2015 IEEE International Conference on Data Mining Workshop (ICDMW).

Beyond the Scales: A physics-informed machine learning approach for more efficient modeling of SARS-CoV-2 spike glycoprotein

M. Rafailovich, M. Simon, Peng Zhang, 2021 .

Task mapping on supercomputers with cellular networks

Yuefan Deng, Yongzhi Chen, Yuefan Deng, 2008, Comput. Phys. Commun..

Optimal Routing for a Family of Scalable Interconnection Networks

Yuefan Deng, Zhipeng Xu, Xiaolong Huang, 2019, ArXiv.

Applied Parallel Computing

Yuefan Deng, Yuefan Deng, 2012 .

Final report: Stochastic partial differential equations applied to the predictability of complex multiscale phenomena

Yuefan Deng, W. Brent Lindquist, James Glimm, 2001 .

A renormalization group scaling analysis for compressible two-phase flow

Yuefan Deng, Qiang Zhang, David H. Sharp, 1993 .

Design and Analysis of Pipelined Broadcast Algorithms for the All-Port Interlaced Bypass Torus Networks

Peng Zhang, Yuefan Deng, Peng Zhang, 2012, IEEE Transactions on Parallel and Distributed Systems.

Numerical Methods for Simulating Ginzburg-Landau Vortices

Yuefan Deng, Mo Mu, Chung-Chiang Chou, 1998, SIAM J. Sci. Comput..

Symmetry insights for design of supercomputer network topologies: roots and weights lattices

Yuefan Deng, Alexandre F. Ramos, José Eduardo Martinho Hornos, 2012 .

A multiscale model for multiple platelet aggregation in shear flow

Prachi Gupta, D. Bluestein, Peng Zhang, 2021, Biomechanics and Modeling in Mechanobiology.

A Multiscale Model for Shear-Mediated Platelet Adhesion Dynamics: Correlating In Silico with In Vitro Results

D. Bluestein, Peng Zhang, Yuefan Deng, 2023, Annals of Biomedical Engineering.