Federico Zambelli

发表

The LIBI Grid Platform an International Laboratory for Bioinformatics

Ernesto Picardi, Italo Epicoco, Sandro Fiore, 2008 .

ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing

Paola Bonizzoni, Mattia D'Antonio, Ernesto Picardi, 2010, Nucleic Acids Res..

Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets

Graziano Pesole, Giulio Pavesi, Federico Zambelli, 2012, Nucleic Acids Res..

VINYL: Variant prIoritizatioN bY survivaL analysis

Matteo Chiara, Graziano Pesole, Marco Antonio Tangaro, 2020, bioRxiv.

A software tool to explore the structure of high dimensional biomolecular data

Giorgio Valentini, Giulio Pavesi, Federico Zambelli, 2010, ECTI-CON2010: The 2010 ECTI International Confernce on Electrical Engineering/Electronics, Computer, Telecommunications and Information Technology.

PIPE-T: a new Galaxy tool for the analysis of RT-qPCR expression data

Marco Antonio Tangaro, Federico Zambelli, Davide Cangelosi, 2019, Scientific Reports.

Integrating Peak Colocalization and Motif Enrichment Analysis for the Discovery of Genome-Wide Regulatory Modules and Transcription Factor Recruitment Rules

Federico Zambelli, Mirko Ronzio, Diletta Dolfini, 2020, Frontiers in Genetics.

Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities

Ernesto Picardi, Graziano Pesole, Giulio Pavesi, 2020, Briefings Bioinform..

rCASC implementation in Laniakea: porting containerization-based-reproducibility to a cloud Galaxy on-demand platform

Marco Beccuti, Luca Alessandrì, Federico Zambelli, 2019 .

Motif discovery and transcription factor binding sites before and after the next-generation sequencing era

Graziano Pesole, Giulio Pavesi, Federico Zambelli, 2012, Briefings Bioinform..

MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes

Graziano Pesole, Giancarlo Mauri, Giulio Pavesi, 2006, Nucleic Acids Res..

Prediction of over Represented Transcription Factor Binding Sites in Co-regulated Genes Using Whole Genome Matching Statistics

Giulio Pavesi, Federico Zambelli, G. Pavesi, 2007, WILF.

Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes

Graziano Pesole, Giulio Pavesi, Federico Zambelli, 2009, Nucleic Acids Res..

Laniakea: an open solution to provide Galaxy “on-demand” instances over heterogeneous cloud infrastructures

Matteo Chiara, Graziano Pesole, Giacinto Donvito, 2018, bioRxiv.

ELIXIR-IT Industry engagement: overview of the work in progress

Graziano Pesole, Giancarlo Mauri, Rita Casadio, 2019 .

WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences

Graziano Pesole, Giulio Pavesi, Federico Zambelli, 2007, BMC Bioinformatics.

Yet another bioinformatic pipeline for the analysis of ChIP-Seq Data

Giulio Pavesi, Federico Zambelli, Gian Marco Prazzoli, 2010 .

Laniakea: an open solution to provide Galaxy “on-demand” instances over heterogeneous cloud infrastructures

Graziano Pesole, Giacinto Donvito, Marica Antonacci, 2020, GigaScience.

De novo secondary structure motif discovery using RNAProfile.

Giulio Pavesi, Federico Zambelli, G. Pavesi, 2015, Methods in molecular biology.

Tools and data services registry: a community effort to document bioinformatics resources

Silvio C. E. Tosatto, Anthony Bretaudeau, Burkhard Rost, 2015, Nucleic Acids Res..

A Faster Algorithm for Motif Finding in Sequences from ChIP-Seq Data

Giulio Pavesi, Federico Zambelli, 2011, CIBB.

Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data

Ernesto Picardi, Graziano Pesole, Federico Zambelli, 2019, Briefings Bioinform..

SpliceAid-F: a database of human splicing factors and their RNA-binding sites

Mattia D'Antonio, Ernesto Picardi, Graziano Pesole, 2012, Nucleic Acids Res..

ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community

Tiziano Flati, Silvia Gioiosa, Ernesto Picardi, 2020, BMC Bioinformatics.

PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments

Graziano Pesole, Giulio Pavesi, Federico Zambelli, 2013, Nucleic Acids Res..

Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service

Graziano Pesole, Paolo Uva, Giacinto Donvito, 2021, BMC Bioinformatics.

An acetylation-monoubiquitination switch on Lysine 120 of H2B

Giulio Pavesi, Federico Zambelli, Diletta Dolfini, 2011, Epigenetics.

The LIBI Grid Platform for Bioinformatics

Ernesto Picardi, Piero Fariselli, Italo Epicoco, 2008 .

CoVaCS: a consensus variant calling system

Mattia D'Antonio, Tiziano Flati, Silvia Gioiosa, 2018, BMC Genomics.

The bio.tools registry of software tools and data resources for the life sciences

Hedi Peterson, Tomáš Raček, Radka Svobodová Vařeková, 2019, Genome Biology.

Using Weeder, Pscan, and PscanChIP for the Discovery of Enriched Transcription Factor Binding Site Motifs in Nucleotide Sequences

Graziano Pesole, Giulio Pavesi, Federico Zambelli, 2014, Current protocols in bioinformatics.

RIP-Seq data analysis to determine RNA-protein associations.

Giulio Pavesi, Federico Zambelli, 2015, Methods in molecular biology.

Using community events to increase quality and adoption of standards: the case of Bioschemas

Silvio C. E. Tosatto, Graziano Pesole, Rafael C. Jimenez, 2018 .