Matteo Dal Peraro

发表

Assessment of data‐assisted prediction by inclusion of crosslinking/mass‐spectrometry and small angle X‐ray scattering data in the 12th Critical Assessment of protein Structure Prediction experiment

Giorgio E. Tamò, Luciano A. Abriata, Giulia Fonti, 2018, Proteins.

A further leap of improvement in tertiary structure prediction in CASP13 prompts new routes for future assessments

Matteo Dal Peraro, Luciano A Abriata, Giorgio E Tamò, 2019, Proteins.

An introduction to quantum chemical methods applied to drug design.

Matteo Dal Peraro, Marco Stenta, 2011, Frontiers in bioscience.

Modelling structures in cryo-EM maps.

Matteo Dal Peraro, Sony Malhotra, Maya Topf, 2019, Current opinion in structural biology.

A Nonradial Coarse-Grained Potential for Proteins Produces Naturally Stable Secondary Structure Elements.

Michele Cascella, Matteo Dal Peraro, Davide Alemani, 2010, Journal of chemical theory and computation.

Editorial overview: The future after the cryo-EM resolution revolution.

Matteo Dal Peraro, Ji-Joon Song, 2019, Current opinion in structural biology.

Assessment of hard target modeling in CASP12 reveals an emerging role of alignment‐based contact prediction methods

Andriy Kryshtafovych, Bohdan Monastyrskyy, Matteo Dal Peraro, 2018, Proteins.

Definition and classification of evaluation units for tertiary structure prediction in CASP12 facilitated through semi‐automated metrics

Lisa N Kinch, Andriy Kryshtafovych, Bohdan Monastyrskyy, 2018, Proteins.

Online tools to easily build augmented reality models of biomolecules that run right on the web

Matteo Dal Peraro, Fabio Cortés Rodríguez, Luciano Abriata, 2021 .

Assessment of transferable forcefields for protein simulations attests improved description of disordered states and secondary structure propensities, and hints at multi-protein systems as the next challenge for optimization

Luciano A. Abriata, Matteo Dal Peraro, M. dal Peraro, 2021, Computational and structural biotechnology journal.

Protonation state of Asp120 in the binuclear active site of the metallo-beta-lactamase from Bacteroides fragilis.

Matteo Dal Peraro, Paolo Carloni, Alejandro J Vila, 2003, Inorganic chemistry.

Role of zinc content on the catalytic efficiency of B1 metallo beta-lactamases.

Matteo Dal Peraro, Paolo Carloni, Michael L Klein, 2007, Journal of the American Chemical Society.

Investigating biological systems using first principles Car-Parrinello molecular dynamics simulations.

Francesco Luigi Gervasio, Matteo Dal Peraro, Paolo Carloni, 2007, Current opinion in structural biology.

Structural, physicochemical and dynamic features conserved within the aerolysin pore-forming toxin family

Matteo Dal Peraro, Luciano A Abriata, Nuria Cirauqui, 2017, Scientific Reports.

HCV E2 core structures and mAbs: something is still missing.

Matteo Dal Peraro, Nicola Clementi, Nicasio Mancini, 2014, Drug discovery today.

Phosphodiester cleavage in ribonuclease H occurs via an associative two-metal-aided catalytic mechanism.

Matteo Dal Peraro, Marco De Vivo, Michael L Klein, 2008, Journal of the American Chemical Society.

GtrA Protein Rv3789 Is Required for Arabinosylation of Arabinogalactan in Mycobacterium tuberculosis

Luciano A. Abriata, Matteo Dal Peraro, Stewart T. Cole, 2015, Journal of bacteriology.

Common mechanistic features among metallo-beta-lactamases: a computational study of Aeromonas hydrophila CphA enzyme.

Alessandra Magistrato, Matteo Dal Peraro, Paolo Carloni, 2009, The Journal of biological chemistry.

Disentangling constraints using viability evolution principles in integrative modeling of macromolecular assemblies

Dario Floreano, Matteo T. Degiacomi, Matteo Dal Peraro, 2017, Scientific Reports.

Molecular assembly of the aerolysin pore reveals a swirling membrane-insertion mechanism.

Henning Stahlberg, Matteo Dal Peraro, Mohamed Chami, 2013, Nature chemical biology.

Cryo-EM structure of aerolysin variants reveals a novel protein fold and the pore-formation process

Matteo Dal Peraro, Nuria Cirauqui, S. De Carlo, 2016, Nature Communications.

Polarization effects and charge transfer in the KcsA potassium channel.

Ursula Rothlisberger, Matteo Dal Peraro, Paolo Carloni, 2006, Biophysical chemistry.

Assessing the potential of atomistic molecular dynamics simulations to probe reversible protein-protein recognition and binding

Luciano A. Abriata, Matteo Dal Peraro, M. dal Peraro, 2015, Scientific Reports.

Solute-solvent charge transfer in aqueous solution.

Matteo Dal Peraro, Paolo Carloni, Simone Raugei, 2005, Chemphyschem : a European journal of chemical physics and physical chemistry.

Perturbations of the Straight Transmembrane α-Helical Structure of the Amyloid Precursor Protein Affect Its Processing by γ-Secretase*

Matteo Dal Peraro, Patrick C. Fraering, Thomas Lemmin, 2014, The Journal of Biological Chemistry.

Dissecting the effects of concentrated carbohydrate solutions on protein diffusion, hydration, and internal dynamics.

Matteo Dal Peraro, Luciano A Abriata, Enrico Spiga, 2014, The journal of physical chemistry. B.

Arranged sevenfold: structural insights into the C-terminal oligomerization domain of human C4b-binding protein.

Matteo Dal Peraro, Stefan Schmelz, Andrea Scrima, 2013, Journal of molecular biology.

Understanding and Engineering Thermostability in DNA Ligase from Thermococcus sp. 1519.

Matteo Dal Peraro, Hassan Pezeshgi Modarres, Konstantin G Skryabin, 2015, Biochemistry.

Olfactory receptor pseudo-pseudogenes

Matteo Dal Peraro, Richard Benton, J. Roman Arguello, 2016, Nature.